RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 ERVK-24P63145 666 aa16.28■□□□□ 0.2
SDC1-201ENST00000254351 KRT28Q7Z3Y7 464 aa16.28■□□□□ 0.2
SDC1-201ENST00000254351 TADA2BQ86TJ2 420 aa16.28■□□□□ 0.2
SDC1-201ENST00000254351 NUP133Q8WUM0 1156 aa16.28■□□□□ 0.2
SDC1-201ENST00000254351 CRACR2AQ9BSW2 395 aa16.28■□□□□ 0.2
SDC1-201ENST00000254351 GPAA1O43292 621 aa16.28■□□□□ 0.2
SDC1-201ENST00000254351 RANBP6O60518 1105 aaKnown RBP16.28■□□□□ 0.2
SDC1-201ENST00000254351 IDH1O75874 414 aaKnown RBP16.28■□□□□ 0.2
SDC1-201ENST00000254351 ERLIN2O94905 339 aa16.28■□□□□ 0.2
SDC1-201ENST00000254351 GYPCP04921 128 aa16.28■□□□□ 0.2
SDC1-201ENST00000254351 ATG9AQ7Z3C6 839 aa16.28■□□□□ 0.2
SDC1-201ENST00000254351 CABP5Q9NP86 173 aa16.28■□□□□ 0.2
SDC1-201ENST00000254351 RAB21Q9UL25 225 aa16.28■□□□□ 0.2
SDC1-201ENST00000254351 LTBP4Q8N2S1 1624 aa16.28■□□□□ 0.2
SDC1-201ENST00000254351 TBC1D10CQ8IV04 446 aa16.27■□□□□ 0.2
SDC1-201ENST00000254351 DIS3L2Q8IYB7 885 aaKnown RBP16.27■□□□□ 0.2
SDC1-201ENST00000254351 IQUBQ8NA54 791 aa16.27■□□□□ 0.2
SDC1-201ENST00000254351 MYCBPQ99417 103 aaPredicted RBP16.27■□□□□ 0.2
SDC1-201ENST00000254351 SLAIN2Q9P270 581 aa16.27■□□□□ 0.2
SDC1-201ENST00000254351 CTNND2Q9UQB3 1225 aa16.27■□□□□ 0.2
SDC1-201ENST00000254351 PXDNQ92626 1479 aa16.27■□□□□ 0.19
SDC1-201ENST00000254351 EXOC5O00471 708 aa16.27■□□□□ 0.19
SDC1-201ENST00000254351 PPFIA4O75335 1185 aa16.27■□□□□ 0.19
SDC1-201ENST00000254351 ZC3H6P61129 1189 aaKnown RBP16.27■□□□□ 0.19
SDC1-201ENST00000254351 MSANTD4Q8NCY6 345 aa16.27■□□□□ 0.19
SDC1-201ENST00000254351 OXER1Q8TDS5 423 aa16.27■□□□□ 0.19
SDC1-201ENST00000254351 HNRNPLLQ8WVV9 542 aaKnown RBP16.27■□□□□ 0.19
SDC1-201ENST00000254351 CSRNP2Q9H175 543 aa16.27■□□□□ 0.19
SDC1-201ENST00000254351 MKRN1Q9UHC7 482 aaKnown RBP16.27■□□□□ 0.19
SDC1-201ENST00000254351 UTYO14607 1347 aa16.27■□□□□ 0.19
SDC1-201ENST00000254351 MFAP3LO75121 409 aa16.26■□□□□ 0.19
SDC1-201ENST00000254351 STIM1Q13586 685 aa16.26■□□□□ 0.19
SDC1-201ENST00000254351 BCAS4Q8TDM0 211 aa16.26■□□□□ 0.19
SDC1-201ENST00000254351 FAM212AQ96EL1 285 aa16.26■□□□□ 0.19
SDC1-201ENST00000254351 FAM107BQ9H098 131 aa16.26■□□□□ 0.19
SDC1-201ENST00000254351 ABCC6O95255 1503 aa16.26■□□□□ 0.19
SDC1-201ENST00000254351 NCAPD2Q15021 1401 aa16.26■□□□□ 0.19
SDC1-201ENST00000254351 ZBTB43O43298 467 aa16.26■□□□□ 0.19
SDC1-201ENST00000254351 PPP6R2O75170 966 aa16.26■□□□□ 0.19
SDC1-201ENST00000254351 ATP1A1P05023 1023 aaKnown RBP16.26■□□□□ 0.19
SDC1-201ENST00000254351 DNA2P51530 1060 aa16.26■□□□□ 0.19
SDC1-201ENST00000254351 MDM2Q00987 491 aaPredicted RBP16.26■□□□□ 0.19
SDC1-201ENST00000254351 CPLX2Q6PUV4 134 aaKnown RBP16.26■□□□□ 0.19
SDC1-201ENST00000254351 ENOX1Q8TC92 643 aaKnown RBP16.26■□□□□ 0.19
SDC1-201ENST00000254351 ACBD3Q9H3P7 528 aa16.26■□□□□ 0.19
SDC1-201ENST00000254351 ANGEL1Q9UNK9 670 aaKnown RBP16.26■□□□□ 0.19
SDC1-201ENST00000254351 H0YHG0 523 aa16.25■□□□□ 0.19
SDC1-201ENST00000254351 KRT9P35527 623 aa16.25■□□□□ 0.19
SDC1-201ENST00000254351 USP5P45974 858 aa16.25■□□□□ 0.19
SDC1-201ENST00000254351 TOB1P50616 345 aaPredicted RBP16.25■□□□□ 0.19
SDC1-201ENST00000254351 KCTD16Q68DU8 428 aa16.25■□□□□ 0.19
SDC1-201ENST00000254351 BRINP3Q76B58 766 aa16.25■□□□□ 0.19
SDC1-201ENST00000254351 SYNRGQ9UMZ2 1314 aa16.25■□□□□ 0.19
SDC1-201ENST00000254351 ZEB2O60315 1214 aa16.25■□□□□ 0.19
SDC1-201ENST00000254351 ATP1A2P50993 1020 aa16.25■□□□□ 0.19
SDC1-201ENST00000254351 CTDSPL2Q05D32 466 aa16.25■□□□□ 0.19
SDC1-201ENST00000254351 PPARAQ07869 468 aa16.25■□□□□ 0.19
SDC1-201ENST00000254351 TMEM67Q5HYA8 995 aa16.25■□□□□ 0.19
SDC1-201ENST00000254351 APOA5Q6Q788 366 aa16.25■□□□□ 0.19
SDC1-201ENST00000254351 TTC5Q8N0Z6 440 aa16.25■□□□□ 0.19
SDC1-201ENST00000254351 MLKLQ8NB16 471 aa16.25■□□□□ 0.19
SDC1-201ENST00000254351 NCAPGQ9BPX3 1015 aa16.25■□□□□ 0.19
SDC1-201ENST00000254351 CACNA1FO60840 1977 aa16.25■□□□□ 0.19
SDC1-201ENST00000254351 MACROD2A1Z1Q3 448 aa16.25■□□□□ 0.19
SDC1-201ENST00000254351 POTEB2H3BUK9 544 aa16.25■□□□□ 0.19
SDC1-201ENST00000254351 SLC7A5Q01650 507 aa16.25■□□□□ 0.19
SDC1-201ENST00000254351 C2orf54Q08AI8 447 aa16.25■□□□□ 0.19
SDC1-201ENST00000254351 ARHGEF25Q86VW2 580 aa16.25■□□□□ 0.19
SDC1-201ENST00000254351 ANKRD24Q8TF21 1146 aa16.25■□□□□ 0.19
SDC1-201ENST00000254351 JADE2Q9NQC1 790 aa16.25■□□□□ 0.19
SDC1-201ENST00000254351 SMARCAL1Q9NZC9 954 aa16.25■□□□□ 0.19
SDC1-201ENST00000254351 FAM169AQ9Y6X4 670 aa16.25■□□□□ 0.19
SDC1-201ENST00000254351 UBN2Q6ZU65 1347 aa16.25■□□□□ 0.19
SDC1-201ENST00000254351 A0A1B0GTH6 734 aa16.24■□□□□ 0.19
SDC1-201ENST00000254351 GOLGA6CA6NDK9 693 aa16.24■□□□□ 0.19
SDC1-201ENST00000254351 GOLGA6DP0CG33 693 aa16.24■□□□□ 0.19
SDC1-201ENST00000254351 PIP4K2BP78356 416 aa16.24■□□□□ 0.19
SDC1-201ENST00000254351 ATP2B2Q01814 1243 aa16.24■□□□□ 0.19
SDC1-201ENST00000254351 FILIP1LQ4L180 1135 aa16.24■□□□□ 0.19
SDC1-201ENST00000254351 CENPHQ9H3R5 247 aa16.24■□□□□ 0.19
SDC1-201ENST00000254351 NLRP2Q9NX02 1062 aa16.24■□□□□ 0.19
SDC1-201ENST00000254351 GOLGA6AQ9NYA3 693 aa16.24■□□□□ 0.19
SDC1-201ENST00000254351 AXIN2Q9Y2T1 843 aa16.24■□□□□ 0.19
SDC1-201ENST00000254351 A0A087X0B3 334 aa16.24■□□□□ 0.19
SDC1-201ENST00000254351 MORC3Q14149 939 aa16.24■□□□□ 0.19
SDC1-201ENST00000254351 NOSTRINQ8IVI9 506 aa16.24■□□□□ 0.19
SDC1-201ENST00000254351 RRP36Q96EU6 259 aaKnown RBP16.24■□□□□ 0.19
SDC1-201ENST00000254351 GNL3LQ9NVN8 582 aaKnown RBP16.24■□□□□ 0.19
SDC1-201ENST00000254351 GEMIN8Q9NWZ8 242 aaKnown RBP16.24■□□□□ 0.19
SDC1-201ENST00000254351 HPCAL4Q9UM19 191 aa16.24■□□□□ 0.19
SDC1-201ENST00000254351 DUSP10Q9Y6W6 482 aa16.24■□□□□ 0.19
SDC1-201ENST00000254351 ECM2O94769 699 aaPredicted RBP16.23■□□□□ 0.19
SDC1-201ENST00000254351 PLCD1P51178 756 aa16.23■□□□□ 0.19
SDC1-201ENST00000254351 EZH2Q15910 746 aaKnown RBP16.23■□□□□ 0.19
SDC1-201ENST00000254351 TTLL7Q6ZT98 887 aa16.23■□□□□ 0.19
SDC1-201ENST00000254351 PANX2Q96RD6 677 aa16.23■□□□□ 0.19
SDC1-201ENST00000254351 GBP3Q9H0R5 595 aa16.23■□□□□ 0.19
SDC1-201ENST00000254351 CEP126Q9P2H0 1117 aa16.23■□□□□ 0.19
SDC1-201ENST00000254351 DACH1Q9UI36 760 aa16.23■□□□□ 0.19
SDC1-201ENST00000254351 EBAG9O00559 213 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 101.4 ms