RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 IFIT3O14879 490 aaKnown RBP23.68■■□□□ 1.38
CLN3-250ENST00000636839 TCP10Q12799 353 aa23.68■■□□□ 1.38
CLN3-250ENST00000636839 TMEM67Q5HYA8 995 aa23.68■■□□□ 1.38
CLN3-250ENST00000636839 LY9Q9HBG7 655 aa23.68■■□□□ 1.38
CLN3-250ENST00000636839 ANGEL1Q9UNK9 670 aaKnown RBP23.68■■□□□ 1.38
CLN3-250ENST00000636839 WDR19Q8NEZ3 1342 aa23.68■■□□□ 1.38
CLN3-250ENST00000636839 KLF18A0A0U1RQI7 1052 aa23.67■■□□□ 1.38
CLN3-250ENST00000636839 NMT2O60551 498 aa23.67■■□□□ 1.38
CLN3-250ENST00000636839 PPFIA3O75145 1194 aa23.67■■□□□ 1.38
CLN3-250ENST00000636839 ESR2Q92731 530 aa23.67■■□□□ 1.38
CLN3-250ENST00000636839 MYO3BQ8WXR4 1341 aa23.67■■□□□ 1.38
CLN3-250ENST00000636839 GTF3C6Q969F1 213 aa23.67■■□□□ 1.38
CLN3-250ENST00000636839 FAM198AQ9UFP1 575 aa23.67■■□□□ 1.38
CLN3-250ENST00000636839 LAMB1P07942 1786 aa23.66■■□□□ 1.38
CLN3-250ENST00000636839 EVCP57679 992 aa23.66■■□□□ 1.38
CLN3-250ENST00000636839 HPS5Q9UPZ3 1129 aa23.66■■□□□ 1.38
CLN3-250ENST00000636839 FZD9O00144 591 aa23.66■■□□□ 1.38
CLN3-250ENST00000636839 PFKFB2O60825 505 aa23.66■■□□□ 1.38
CLN3-250ENST00000636839 RXRAP19793 462 aa23.66■■□□□ 1.38
CLN3-250ENST00000636839 AGBL3Q8NEM8 1001 aa23.66■■□□□ 1.38
CLN3-250ENST00000636839 TMEM87BQ96K49 555 aa23.66■■□□□ 1.38
CLN3-250ENST00000636839 MYL10Q9BUA6 226 aa23.66■■□□□ 1.38
CLN3-250ENST00000636839 OSBPL5Q9H0X9 879 aaPredicted RBP23.66■■□□□ 1.38
CLN3-250ENST00000636839 CWC22Q9HCG8 908 aaKnown RBP23.66■■□□□ 1.38
CLN3-250ENST00000636839 ORC4O43929 436 aa23.65■■□□□ 1.38
CLN3-250ENST00000636839 SLC3A2P08195 630 aaKnown RBP23.65■■□□□ 1.38
CLN3-250ENST00000636839 PDE4BQ07343 736 aa23.65■■□□□ 1.38
CLN3-250ENST00000636839 OGFOD1Q8N543 542 aa23.65■■□□□ 1.38
CLN3-250ENST00000636839 GJA3Q9Y6H8 435 aa23.65■■□□□ 1.38
CLN3-250ENST00000636839 ZNF541Q9H0D2 1346 aa23.65■■□□□ 1.38
CLN3-250ENST00000636839 DDX60LQ5H9U9 1706 aaKnown RBP23.65■■□□□ 1.38
CLN3-250ENST00000636839 CLRN2A0PK11 232 aa23.64■■□□□ 1.38
CLN3-250ENST00000636839 SPDYE2BA6NHP3 402 aa23.64■■□□□ 1.38
CLN3-250ENST00000636839 JAK2O60674 1132 aa23.64■■□□□ 1.38
CLN3-250ENST00000636839 SPDYE6P0CI01 402 aa23.64■■□□□ 1.38
CLN3-250ENST00000636839 AMOTL1Q8IY63 956 aa23.64■■□□□ 1.38
CLN3-250ENST00000636839 ZNF274Q96GC6 653 aaPredicted RBP23.64■■□□□ 1.38
CLN3-250ENST00000636839 MYH1P12882 1939 aa23.64■■□□□ 1.37
CLN3-250ENST00000636839 EGFRP00533 1210 aa23.64■■□□□ 1.37
CLN3-250ENST00000636839 SMC3Q9UQE7 1217 aa23.64■■□□□ 1.37
CLN3-250ENST00000636839 FOCADQ5VW36 1801 aa23.63■■□□□ 1.37
CLN3-250ENST00000636839 ROBO3Q96MS0 1386 aa23.63■■□□□ 1.37
CLN3-250ENST00000636839 GOLGA8BA8MQT2 603 aa23.63■■□□□ 1.37
CLN3-250ENST00000636839 GJB2P29033 226 aa23.63■■□□□ 1.37
CLN3-250ENST00000636839 CDK8P49336 464 aa23.63■■□□□ 1.37
CLN3-250ENST00000636839 TNIP1Q15025 636 aa23.63■■□□□ 1.37
CLN3-250ENST00000636839 DLGAP5Q15398 846 aa23.63■■□□□ 1.37
CLN3-250ENST00000636839 FOXD4L5Q5VV16 416 aaPredicted RBP23.63■■□□□ 1.37
CLN3-250ENST00000636839 NFXL1Q6ZNB6 911 aa23.63■■□□□ 1.37
CLN3-250ENST00000636839 SH3BP5LQ7L8J4 393 aa23.63■■□□□ 1.37
CLN3-250ENST00000636839 FOXD4L4Q8WXT5 416 aaPredicted RBP23.63■■□□□ 1.37
CLN3-250ENST00000636839 MKNK2Q9HBH9 465 aa23.63■■□□□ 1.37
CLN3-250ENST00000636839 HDAC9Q9UKV0 1011 aa23.63■■□□□ 1.37
CLN3-250ENST00000636839 ZDHHC9Q9Y397 364 aa23.63■■□□□ 1.37
CLN3-250ENST00000636839 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.63■■□□□ 1.37
CLN3-250ENST00000636839 TNKSO95271 1327 aa23.63■■□□□ 1.37
CLN3-250ENST00000636839 CTDNEP1O95476 244 aa23.62■■□□□ 1.37
CLN3-250ENST00000636839 TFAP4Q01664 338 aa23.62■■□□□ 1.37
CLN3-250ENST00000636839 SEC23AQ15436 765 aa23.62■■□□□ 1.37
CLN3-250ENST00000636839 CCDC144CPQ8IYA2 1237 aa23.62■■□□□ 1.37
CLN3-250ENST00000636839 ENAHQ8N8S7 591 aaPredicted RBP23.62■■□□□ 1.37
CLN3-250ENST00000636839 ZSCAN10Q96SZ4 725 aaPredicted RBP23.62■■□□□ 1.37
CLN3-250ENST00000636839 UBAC1Q9BSL1 405 aa23.62■■□□□ 1.37
CLN3-250ENST00000636839 DDTLA6NHG4 134 aaPredicted RBP23.62■■□□□ 1.37
CLN3-250ENST00000636839 PCP11498 1178 aaKnown RBP23.62■■□□□ 1.37
CLN3-250ENST00000636839 GMPSP49915 693 aaPredicted RBP23.62■■□□□ 1.37
CLN3-250ENST00000636839 C16orf86Q6ZW13 317 aa23.62■■□□□ 1.37
CLN3-250ENST00000636839 IDI2Q9BXS1 227 aa23.62■■□□□ 1.37
CLN3-250ENST00000636839 CIZ1Q9ULV3 898 aaPredicted RBP23.62■■□□□ 1.37
CLN3-250ENST00000636839 SCAF8Q9UPN6 1271 aaKnown RBP23.62■■□□□ 1.37
CLN3-250ENST00000636839 RASA1P20936 1047 aa23.61■■□□□ 1.37
CLN3-250ENST00000636839 EIF6P56537 245 aaKnown RBP23.61■■□□□ 1.37
CLN3-250ENST00000636839 WTAPQ15007 396 aa23.61■■□□□ 1.37
CLN3-250ENST00000636839 RBM26Q5T8P6 1007 aaKnown RBP23.61■■□□□ 1.37
CLN3-250ENST00000636839 APOA5Q6Q788 366 aa23.61■■□□□ 1.37
CLN3-250ENST00000636839 ECM29Q5VYK3 1845 aa23.61■■□□□ 1.37
CLN3-250ENST00000636839 TSPY2A6NKD2 308 aa23.6■■□□□ 1.37
CLN3-250ENST00000636839 LIFRP42702 1097 aa23.6■■□□□ 1.37
CLN3-250ENST00000636839 NBPF9Q3BBW0 867 aa23.6■■□□□ 1.37
CLN3-250ENST00000636839 SGMS1Q86VZ5 419 aa23.6■■□□□ 1.37
CLN3-250ENST00000636839 DDX11Q96FC9 970 aa23.6■■□□□ 1.37
CLN3-250ENST00000636839 IL17RBQ9NRM6 502 aa23.6■■□□□ 1.37
CLN3-250ENST00000636839 TCP10L2B9ZVM9 353 aa23.6■■□□□ 1.37
CLN3-250ENST00000636839 LMNB1P20700 586 aa23.6■■□□□ 1.37
CLN3-250ENST00000636839 RAB3GAP1Q15042 981 aa23.6■■□□□ 1.37
CLN3-250ENST00000636839 MICU3Q86XE3 530 aa23.6■■□□□ 1.37
CLN3-250ENST00000636839 ZNF70Q9UC06 446 aaPredicted RBP23.6■■□□□ 1.37
CLN3-250ENST00000636839 FAM196BA6NMK8 535 aa23.59■■□□□ 1.37
CLN3-250ENST00000636839 GABPAQ06546 454 aa23.59■■□□□ 1.37
CLN3-250ENST00000636839 MYOZ2Q9NPC6 264 aa23.59■■□□□ 1.37
CLN3-250ENST00000636839 SART3Q15020 963 aaKnown RBP23.59■■□□□ 1.37
CLN3-250ENST00000636839 TTC6Q86TZ1 520 aa23.59■■□□□ 1.37
CLN3-250ENST00000636839 TNPO1Q92973 898 aaKnown RBP23.59■■□□□ 1.37
CLN3-250ENST00000636839 ERICH2A1L162 156 aa23.58■■□□□ 1.37
CLN3-250ENST00000636839 CCDC69A6NI79 296 aa23.58■■□□□ 1.37
CLN3-250ENST00000636839 WNT10BO00744 389 aa23.58■■□□□ 1.37
CLN3-250ENST00000636839 CDC27P30260 824 aa23.58■■□□□ 1.37
CLN3-250ENST00000636839 ADD1P35611 737 aaKnown RBP23.58■■□□□ 1.37
CLN3-250ENST00000636839 SAMD7Q7Z3H4 446 aa23.58■■□□□ 1.37
CLN3-250ENST00000636839 IQCA1Q86XH1 822 aa23.58■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms