RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 GRM1Q13255 1194 aa24.37■■□□□ 1.49
PTCD3-220ENST00000627371 VGLL4Q14135 290 aa24.37■■□□□ 1.49
PTCD3-220ENST00000627371 METTL16Q86W50 562 aaKnown RBP24.37■■□□□ 1.49
PTCD3-220ENST00000627371 FAM227BQ96M60 508 aa24.37■■□□□ 1.49
PTCD3-220ENST00000627371 MCM9Q9NXL9 1143 aa24.37■■□□□ 1.49
PTCD3-220ENST00000627371 CSADQ9Y600 493 aa24.37■■□□□ 1.49
PTCD3-220ENST00000627371 A0A0D9SFI3 127 aa24.36■■□□□ 1.49
PTCD3-220ENST00000627371 PHF20L1A8MW92 1017 aa24.36■■□□□ 1.49
PTCD3-220ENST00000627371 HIP1O00291 1037 aa24.36■■□□□ 1.49
PTCD3-220ENST00000627371 SLC4A8Q2Y0W8 1093 aa24.36■■□□□ 1.49
PTCD3-220ENST00000627371 TTC6Q86TZ1 520 aa24.36■■□□□ 1.49
PTCD3-220ENST00000627371 FOXP4Q8IVH2 680 aaPredicted RBP24.36■■□□□ 1.49
PTCD3-220ENST00000627371 DDRGK1Q96HY6 314 aa24.36■■□□□ 1.49
PTCD3-220ENST00000627371 XPO5Q9HAV4 1204 aaKnown RBP eCLIP24.36■■□□□ 1.49
PTCD3-220ENST00000627371 FAM196BA6NMK8 535 aa24.35■■□□□ 1.49
PTCD3-220ENST00000627371 POLR3DP05423 398 aaPredicted RBP24.35■■□□□ 1.49
PTCD3-220ENST00000627371 INPP5BP32019 993 aa24.35■■□□□ 1.49
PTCD3-220ENST00000627371 NOGQ13253 232 aa24.35■■□□□ 1.49
PTCD3-220ENST00000627371 NMIQ13287 307 aaPredicted RBP24.35■■□□□ 1.49
PTCD3-220ENST00000627371 ZKSCAN4Q969J2 545 aaPredicted RBP24.35■■□□□ 1.49
PTCD3-220ENST00000627371 SLC10A4Q96EP9 437 aa24.35■■□□□ 1.49
PTCD3-220ENST00000627371 EHD4Q9H223 541 aa24.35■■□□□ 1.49
PTCD3-220ENST00000627371 PHIPQ8WWQ0 1821 aa24.34■■□□□ 1.49
PTCD3-220ENST00000627371 GSG1L2A8MUP6 293 aa24.34■■□□□ 1.49
PTCD3-220ENST00000627371 MCMDC2Q4G0Z9 681 aa24.34■■□□□ 1.49
PTCD3-220ENST00000627371 NOL9Q5SY16 702 aaKnown RBP24.34■■□□□ 1.49
PTCD3-220ENST00000627371 GIMAP6Q6P9H5 292 aa24.34■■□□□ 1.49
PTCD3-220ENST00000627371 CCDC129Q6ZRS4 1044 aa24.34■■□□□ 1.49
PTCD3-220ENST00000627371 CRACR2BQ8N4Y2 399 aaPredicted RBP24.34■■□□□ 1.49
PTCD3-220ENST00000627371 DNAJC18Q9H819 358 aa24.34■■□□□ 1.49
PTCD3-220ENST00000627371 ELP3Q9H9T3 547 aa24.34■■□□□ 1.49
PTCD3-220ENST00000627371 DIAPH3Q9NSV4 1193 aa24.34■■□□□ 1.49
PTCD3-220ENST00000627371 SNCAIPQ9Y6H5 919 aa24.34■■□□□ 1.49
PTCD3-220ENST00000627371 AOC2O75106 756 aa24.33■■□□□ 1.49
PTCD3-220ENST00000627371 PLCD1P51178 756 aa24.33■■□□□ 1.49
PTCD3-220ENST00000627371 JMYQ8N9B5 988 aa24.33■■□□□ 1.49
PTCD3-220ENST00000627371 WNK4Q96J92 1243 aa24.33■■□□□ 1.49
PTCD3-220ENST00000627371 TRIM34Q9BYJ4 488 aa24.33■■□□□ 1.49
PTCD3-220ENST00000627371 SERPINB13Q9UIV8 391 aa24.33■■□□□ 1.49
PTCD3-220ENST00000627371 PATL2C9JE40 543 aaKnown RBP24.32■■□□□ 1.48
PTCD3-220ENST00000627371 MAP2K2P36507 400 aa24.32■■□□□ 1.48
PTCD3-220ENST00000627371 SPRYD7Q5W111 196 aa24.32■■□□□ 1.48
PTCD3-220ENST00000627371 AMOTL1Q8IY63 956 aa24.32■■□□□ 1.48
PTCD3-220ENST00000627371 EPB41L4AQ9HCS5 686 aaPredicted RBP24.32■■□□□ 1.48
PTCD3-220ENST00000627371 ARPP21Q9UBL0 812 aaPredicted RBP24.32■■□□□ 1.48
PTCD3-220ENST00000627371 CTNND1O60716 968 aaKnown RBP24.31■■□□□ 1.48
PTCD3-220ENST00000627371 ZBTB48P10074 688 aaPredicted RBP24.31■■□□□ 1.48
PTCD3-220ENST00000627371 SCYL3Q8IZE3 742 aa24.31■■□□□ 1.48
PTCD3-220ENST00000627371 ZBTB4Q9P1Z0 1013 aaPredicted RBP24.31■■□□□ 1.48
PTCD3-220ENST00000627371 SPDYE5A6NIY4 337 aa24.3■■□□□ 1.48
PTCD3-220ENST00000627371 USP17L12C9JPN9 530 aa24.3■■□□□ 1.48
PTCD3-220ENST00000627371 USP17L21D6R901 530 aa24.3■■□□□ 1.48
PTCD3-220ENST00000627371 APPP05067 770 aa24.3■■□□□ 1.48
PTCD3-220ENST00000627371 CYP2D6P10635 497 aa24.3■■□□□ 1.48
PTCD3-220ENST00000627371 EVX2Q03828 476 aa24.3■■□□□ 1.48
PTCD3-220ENST00000627371 GABPAQ06546 454 aa24.3■■□□□ 1.48
PTCD3-220ENST00000627371 BMP2KLQ5H9B9 411 aa24.3■■□□□ 1.48
PTCD3-220ENST00000627371 C12orf60Q5U649 245 aa24.3■■□□□ 1.48
PTCD3-220ENST00000627371 CTR9Q6PD62 1173 aa24.3■■□□□ 1.48
PTCD3-220ENST00000627371 CWC27Q6UX04 472 aaKnown RBP24.3■■□□□ 1.48
PTCD3-220ENST00000627371 ZNF589Q86UQ0 364 aaPredicted RBP24.3■■□□□ 1.48
PTCD3-220ENST00000627371 ERO1BQ86YB8 467 aa24.3■■□□□ 1.48
PTCD3-220ENST00000627371 OPTNQ96CV9 577 aa24.3■■□□□ 1.48
PTCD3-220ENST00000627371 NACAP1Q9BZK3 213 aa24.3■■□□□ 1.48
PTCD3-220ENST00000627371 TAOK2Q9UL54 1235 aa24.3■■□□□ 1.48
PTCD3-220ENST00000627371 CCDC171Q6TFL3 1326 aa24.3■■□□□ 1.48
PTCD3-220ENST00000627371 PTPRFP10586 1907 aa24.29■■□□□ 1.48
PTCD3-220ENST00000627371 GJA5P36382 358 aa24.29■■□□□ 1.48
PTCD3-220ENST00000627371 TDO2P48775 406 aa24.29■■□□□ 1.48
PTCD3-220ENST00000627371 SBK1Q52WX2 424 aa24.29■■□□□ 1.48
PTCD3-220ENST00000627371 IFNL3Q8IZI9 196 aa24.29■■□□□ 1.48
PTCD3-220ENST00000627371 ZIC5Q96T25 663 aa24.29■■□□□ 1.48
PTCD3-220ENST00000627371 FOXP2O15409 715 aa24.28■■□□□ 1.48
PTCD3-220ENST00000627371 CAP2P40123 477 aa24.28■■□□□ 1.48
PTCD3-220ENST00000627371 MFAP1P55081 439 aaKnown RBP24.28■■□□□ 1.48
PTCD3-220ENST00000627371 MKRN3Q13064 507 aaKnown RBP24.28■■□□□ 1.48
PTCD3-220ENST00000627371 RRP1BQ14684 758 aaKnown RBP24.28■■□□□ 1.48
PTCD3-220ENST00000627371 TATDN1Q6P1N9 297 aa24.28■■□□□ 1.48
PTCD3-220ENST00000627371 CNKSR2Q8WXI2 1034 aa24.28■■□□□ 1.48
PTCD3-220ENST00000627371 CYP2D7A0A087X1C5 515 aa24.27■■□□□ 1.48
PTCD3-220ENST00000627371 KIF23Q02241 960 aaPredicted RBP24.27■■□□□ 1.48
PTCD3-220ENST00000627371 PPATQ06203 517 aa24.27■■□□□ 1.48
PTCD3-220ENST00000627371 VPS53Q5VIR6 699 aa24.27■■□□□ 1.48
PTCD3-220ENST00000627371 OTUD5Q96G74 571 aa24.27■■□□□ 1.48
PTCD3-220ENST00000627371 PICK1Q9NRD5 415 aa24.27■■□□□ 1.48
PTCD3-220ENST00000627371 ROBO3Q96MS0 1386 aa24.27■■□□□ 1.48
PTCD3-220ENST00000627371 CHMLP26374 656 aa24.26■■□□□ 1.47
PTCD3-220ENST00000627371 PPIL2Q13356 520 aa24.26■■□□□ 1.47
PTCD3-220ENST00000627371 NAPBQ9H115 298 aa24.26■■□□□ 1.47
PTCD3-220ENST00000627371 SWAP70Q9UH65 585 aa24.26■■□□□ 1.47
PTCD3-220ENST00000627371 RAD50Q92878 1312 aa24.26■■□□□ 1.47
PTCD3-220ENST00000627371 LAMA4Q16363 1823 aa24.26■■□□□ 1.47
PTCD3-220ENST00000627371 PTPRAP18433 802 aa24.25■■□□□ 1.47
PTCD3-220ENST00000627371 SHMT1P34896 483 aa24.25■■□□□ 1.47
PTCD3-220ENST00000627371 REM2Q8IYK8 340 aaPredicted RBP24.25■■□□□ 1.47
PTCD3-220ENST00000627371 DYNLL2Q96FJ2 89 aa24.25■■□□□ 1.47
PTCD3-220ENST00000627371 SMIM22K7EJ46 135 aa24.24■■□□□ 1.47
PTCD3-220ENST00000627371 HSPD1P10809 573 aaKnown RBP24.24■■□□□ 1.47
PTCD3-220ENST00000627371 MAP2K1Q02750 393 aaPredicted RBP24.24■■□□□ 1.47
PTCD3-220ENST00000627371 C16orf86Q6ZW13 317 aa24.24■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms