RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 AK7Q96M32 723 aa23.26■■□□□ 1.31
SHKBP1-225ENST00000600733 IQSEC3Q9UPP2 1182 aaPredicted RBP23.26■■□□□ 1.31
SHKBP1-225ENST00000600733 NHSL1Q5SYE7 1610 aa23.26■■□□□ 1.31
SHKBP1-225ENST00000600733 A0A0G2JS52 829 aa23.25■■□□□ 1.31
SHKBP1-225ENST00000600733 TMEM232C9JQI7 657 aa23.25■■□□□ 1.31
SHKBP1-225ENST00000600733 SART3Q15020 963 aaKnown RBP23.25■■□□□ 1.31
SHKBP1-225ENST00000600733 HSP90AA4PQ58FG1 418 aa23.25■■□□□ 1.31
SHKBP1-225ENST00000600733 SYT10Q6XYQ8 523 aa23.25■■□□□ 1.31
SHKBP1-225ENST00000600733 FEZ1Q99689 392 aa23.25■■□□□ 1.31
SHKBP1-225ENST00000600733 NID2Q14112 1375 aa23.25■■□□□ 1.31
SHKBP1-225ENST00000600733 STRCQ7RTU9 1775 aa23.25■■□□□ 1.31
SHKBP1-225ENST00000600733 MDM2Q00987 491 aaPredicted RBP23.25■■□□□ 1.31
SHKBP1-225ENST00000600733 GOLGA8FQ08AF8 430 aa23.25■■□□□ 1.31
SHKBP1-225ENST00000600733 GOLGA8DPQ0D2H9 430 aa23.25■■□□□ 1.31
SHKBP1-225ENST00000600733 NUP133Q8WUM0 1156 aa23.25■■□□□ 1.31
SHKBP1-225ENST00000600733 UTP14AQ9BVJ6 771 aaKnown RBP23.25■■□□□ 1.31
SHKBP1-225ENST00000600733 LRP2BPQ9P2M1 347 aa23.25■■□□□ 1.31
SHKBP1-225ENST00000600733 PNPLA7Q6ZV29 1317 aa23.24■■□□□ 1.31
SHKBP1-225ENST00000600733 NRDCO43847 1150 aa23.24■■□□□ 1.31
SHKBP1-225ENST00000600733 GNAT2P19087 354 aa23.24■■□□□ 1.31
SHKBP1-225ENST00000600733 KCNJ6P48051 423 aa23.24■■□□□ 1.31
SHKBP1-225ENST00000600733 INTS5Q6P9B9 1019 aaKnown RBP23.24■■□□□ 1.31
SHKBP1-225ENST00000600733 ERO1AQ96HE7 468 aa23.24■■□□□ 1.31
SHKBP1-225ENST00000600733 FBXO2Q9UK22 296 aaPredicted RBP23.24■■□□□ 1.31
SHKBP1-225ENST00000600733 BCORQ6W2J9 1755 aa23.24■■□□□ 1.31
SHKBP1-225ENST00000600733 ELF2Q15723 593 aa23.24■■□□□ 1.31
SHKBP1-225ENST00000600733 ADGRA1Q86SQ6 560 aa23.24■■□□□ 1.31
SHKBP1-225ENST00000600733 CRACR2BQ8N4Y2 399 aaPredicted RBP23.24■■□□□ 1.31
SHKBP1-225ENST00000600733 PCDHB6Q9Y5E3 794 aa23.24■■□□□ 1.31
SHKBP1-225ENST00000600733 ERICH2A1L162 156 aa23.23■■□□□ 1.31
SHKBP1-225ENST00000600733 SMIM22K7EJ46 135 aa23.23■■□□□ 1.31
SHKBP1-225ENST00000600733 CBFA2T2O43439 604 aa23.23■■□□□ 1.31
SHKBP1-225ENST00000600733 SLU7O95391 586 aaKnown RBP23.23■■□□□ 1.31
SHKBP1-225ENST00000600733 ATP2B1P20020 1258 aa23.23■■□□□ 1.31
SHKBP1-225ENST00000600733 OXER1Q8TDS5 423 aa23.23■■□□□ 1.31
SHKBP1-225ENST00000600733 POLR2DO15514 142 aaKnown RBP23.22■■□□□ 1.31
SHKBP1-225ENST00000600733 PRR29P0C7W0 189 aa23.22■■□□□ 1.31
SHKBP1-225ENST00000600733 ZNF654Q8IZM8 581 aa23.22■■□□□ 1.31
SHKBP1-225ENST00000600733 SDR42E1Q8WUS8 393 aa23.22■■□□□ 1.31
SHKBP1-225ENST00000600733 FOXP1Q9H334 677 aaPredicted RBP23.22■■□□□ 1.31
SHKBP1-225ENST00000600733 DEXIO95424 95 aa23.22■■□□□ 1.31
SHKBP1-225ENST00000600733 PTPREP23469 700 aa23.22■■□□□ 1.31
SHKBP1-225ENST00000600733 IGHMBP2P38935 993 aaKnown RBP23.22■■□□□ 1.31
SHKBP1-225ENST00000600733 DMTNQ08495 405 aa23.22■■□□□ 1.31
SHKBP1-225ENST00000600733 DHX8Q14562 1220 aaKnown RBP23.22■■□□□ 1.31
SHKBP1-225ENST00000600733 POSTNQ15063 836 aa23.22■■□□□ 1.31
SHKBP1-225ENST00000600733 KMT5BQ4FZB7 885 aa23.22■■□□□ 1.31
SHKBP1-225ENST00000600733 CCDC152Q4G0S7 254 aa23.22■■□□□ 1.31
SHKBP1-225ENST00000600733 VSTM4Q8IW00 320 aa23.22■■□□□ 1.31
SHKBP1-225ENST00000600733 FANCBQ8NB91 859 aa23.22■■□□□ 1.31
SHKBP1-225ENST00000600733 INTS13Q9NVM9 706 aa23.22■■□□□ 1.31
SHKBP1-225ENST00000600733 MINDY4BA8MYZ0 360 aa23.21■■□□□ 1.31
SHKBP1-225ENST00000600733 PPARAQ07869 468 aa23.21■■□□□ 1.31
SHKBP1-225ENST00000600733 RILPL1Q5EBL4 403 aa23.21■■□□□ 1.31
SHKBP1-225ENST00000600733 GRAMD1CQ8IYS0 662 aa23.21■■□□□ 1.31
SHKBP1-225ENST00000600733 OGFRQ9NZT2 677 aa23.21■■□□□ 1.31
SHKBP1-225ENST00000600733 SERTAD1Q9UHV2 236 aa23.21■■□□□ 1.31
SHKBP1-225ENST00000600733 MAN1B1Q9UKM7 699 aa23.21■■□□□ 1.31
SHKBP1-225ENST00000600733 DOT1LQ8TEK3 1739 aa23.21■■□□□ 1.31
SHKBP1-225ENST00000600733 CRKLP46109 303 aaKnown RBP23.21■■□□□ 1.31
SHKBP1-225ENST00000600733 CHRNDQ07001 517 aa23.21■■□□□ 1.31
SHKBP1-225ENST00000600733 ZNF827Q17R98 1081 aa23.21■■□□□ 1.31
SHKBP1-225ENST00000600733 L2HGDHQ9H9P8 463 aa23.21■■□□□ 1.31
SHKBP1-225ENST00000600733 CCDC87Q9NVE4 849 aa23.21■■□□□ 1.31
SHKBP1-225ENST00000600733 NPHP1O15259 732 aa23.2■■□□□ 1.3
SHKBP1-225ENST00000600733 TOP1P11387 765 aaKnown RBP23.2■■□□□ 1.3
SHKBP1-225ENST00000600733 CYP7A1P22680 504 aa23.2■■□□□ 1.3
SHKBP1-225ENST00000600733 HOMER1Q86YM7 354 aa23.2■■□□□ 1.3
SHKBP1-225ENST00000600733 PDILTQ8N807 584 aa23.2■■□□□ 1.3
SHKBP1-225ENST00000600733 LRRN4CLQ8ND94 238 aa23.2■■□□□ 1.3
SHKBP1-225ENST00000600733 UBAC1Q9BSL1 405 aa23.2■■□□□ 1.3
SHKBP1-225ENST00000600733 ABCF2Q9UG63 623 aa23.2■■□□□ 1.3
SHKBP1-225ENST00000600733 CAMTA2O94983 1202 aa23.2■■□□□ 1.3
SHKBP1-225ENST00000600733 USP49Q70CQ1 688 aa23.2■■□□□ 1.3
SHKBP1-225ENST00000600733 ZNF397Q8NF99 534 aaPredicted RBP23.2■■□□□ 1.3
SHKBP1-225ENST00000600733 TMX1Q9H3N1 280 aa23.2■■□□□ 1.3
SHKBP1-225ENST00000600733 DDX41Q9UJV9 622 aaKnown RBP23.2■■□□□ 1.3
SHKBP1-225ENST00000600733 COL4A1P02462 1669 aa23.19■■□□□ 1.3
SHKBP1-225ENST00000600733 CCDC196A0A1B0GTZ2 297 aa23.19■■□□□ 1.3
SHKBP1-225ENST00000600733 FMR1Q06787 632 aaKnown RBP eCLIP23.19■■□□□ 1.3
SHKBP1-225ENST00000600733 FBXO38Q6PIJ6 1188 aa23.19■■□□□ 1.3
SHKBP1-225ENST00000600733 RNF41Q9H4P4 317 aaPredicted RBP23.19■■□□□ 1.3
SHKBP1-225ENST00000600733 CABP5Q9NP86 173 aa23.19■■□□□ 1.3
SHKBP1-225ENST00000600733 HOOK1Q9UJC3 728 aaKnown RBP23.19■■□□□ 1.3
SHKBP1-225ENST00000600733 NIP7Q9Y221 180 aaKnown RBP eCLIP23.19■■□□□ 1.3
SHKBP1-225ENST00000600733 WTIPA6NIX2 430 aaPredicted RBP23.19■■□□□ 1.3
SHKBP1-225ENST00000600733 ATP6V1AP38606 617 aa23.19■■□□□ 1.3
SHKBP1-225ENST00000600733 TMTC2Q8N394 836 aa23.19■■□□□ 1.3
SHKBP1-225ENST00000600733 SHISA4Q96DD7 197 aa23.19■■□□□ 1.3
SHKBP1-225ENST00000600733 MYH6P13533 1939 aa23.18■■□□□ 1.3
SHKBP1-225ENST00000600733 PHLPP1O60346 1717 aa23.18■■□□□ 1.3
SHKBP1-225ENST00000600733 NTSR2O95665 410 aa23.18■■□□□ 1.3
SHKBP1-225ENST00000600733 TRMT44Q8IYL2 757 aaKnown RBP23.18■■□□□ 1.3
SHKBP1-225ENST00000600733 TNKSO95271 1327 aa23.18■■□□□ 1.3
SHKBP1-225ENST00000600733 PLCH1Q4KWH8 1693 aa23.18■■□□□ 1.3
SHKBP1-225ENST00000600733 FAM205CA6NFA0 338 aa23.17■■□□□ 1.3
SHKBP1-225ENST00000600733 ELOA2Q8IYF1 753 aaPredicted RBP23.17■■□□□ 1.3
SHKBP1-225ENST00000600733 ACSBG1Q96GR2 724 aa23.17■■□□□ 1.3
SHKBP1-225ENST00000600733 hCG_1642624A0A1W2PR95 340 aa23.17■■□□□ 1.3
SHKBP1-225ENST00000600733 SEC23AQ15436 765 aa23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms