RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 SCYL3Q8IZE3 742 aa19.54■□□□□ 0.72
TRIM28-213ENST00000598355 KBTBD3Q8NAB2 608 aa19.54■□□□□ 0.72
TRIM28-213ENST00000598355 PTPN18Q99952 460 aa19.54■□□□□ 0.72
TRIM28-213ENST00000598355 PI4KBQ9UBF8 816 aa19.54■□□□□ 0.72
TRIM28-213ENST00000598355 MAGEB6P1A0A0J9YX57 407 aa19.53■□□□□ 0.72
TRIM28-213ENST00000598355 CTNND1O60716 968 aaKnown RBP19.53■□□□□ 0.72
TRIM28-213ENST00000598355 ALDH1A1P00352 501 aa19.53■□□□□ 0.72
TRIM28-213ENST00000598355 GTF2A2P52657 109 aa19.53■□□□□ 0.72
TRIM28-213ENST00000598355 BRI3BPQ8WY22 251 aa19.53■□□□□ 0.72
TRIM28-213ENST00000598355 RWDD1Q9H446 243 aaPredicted RBP19.53■□□□□ 0.72
TRIM28-213ENST00000598355 STAP2Q9UGK3 403 aa19.53■□□□□ 0.72
TRIM28-213ENST00000598355 FAM196BA6NMK8 535 aa19.52■□□□□ 0.72
TRIM28-213ENST00000598355 ERC2O15083 957 aa19.52■□□□□ 0.72
TRIM28-213ENST00000598355 GLRX3O76003 335 aaKnown RBP19.52■□□□□ 0.72
TRIM28-213ENST00000598355 IGHDP01880 384 aa19.52■□□□□ 0.72
TRIM28-213ENST00000598355 CHGBP05060 677 aa19.52■□□□□ 0.72
TRIM28-213ENST00000598355 ANKRD45Q5TZF3 282 aa19.52■□□□□ 0.72
TRIM28-213ENST00000598355 LCORLQ8N3X6 602 aa19.52■□□□□ 0.72
TRIM28-213ENST00000598355 EHD4Q9H223 541 aa19.52■□□□□ 0.72
TRIM28-213ENST00000598355 PALD1Q9ULE6 856 aa19.52■□□□□ 0.72
TRIM28-213ENST00000598355 PTPRAP18433 802 aa19.51■□□□□ 0.71
TRIM28-213ENST00000598355 SLFNL1Q499Z3 407 aa19.51■□□□□ 0.71
TRIM28-213ENST00000598355 ZSCAN25Q6NSZ9 544 aa19.51■□□□□ 0.71
TRIM28-213ENST00000598355 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.51■□□□□ 0.71
TRIM28-213ENST00000598355 ZCCHC17Q9NP64 241 aaKnown RBP19.51■□□□□ 0.71
TRIM28-213ENST00000598355 CCL15-CCL14A0A0B4J2E2 113 aa19.5■□□□□ 0.71
TRIM28-213ENST00000598355 USP5P45974 858 aa19.5■□□□□ 0.71
TRIM28-213ENST00000598355 SNAPC2Q13487 334 aa19.5■□□□□ 0.71
TRIM28-213ENST00000598355 MOGSQ13724 837 aa19.5■□□□□ 0.71
TRIM28-213ENST00000598355 RRP1BQ14684 758 aaKnown RBP19.5■□□□□ 0.71
TRIM28-213ENST00000598355 CCL15Q16663 113 aa19.5■□□□□ 0.71
TRIM28-213ENST00000598355 FOXP4Q8IVH2 680 aaPredicted RBP19.5■□□□□ 0.71
TRIM28-213ENST00000598355 CRNKL1Q9BZJ0 848 aaKnown RBP19.5■□□□□ 0.71
TRIM28-213ENST00000598355 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.5■□□□□ 0.71
TRIM28-213ENST00000598355 CETPP11597 493 aa19.49■□□□□ 0.71
TRIM28-213ENST00000598355 CAP2P40123 477 aa19.49■□□□□ 0.71
TRIM28-213ENST00000598355 PDE1AP54750 535 aa19.49■□□□□ 0.71
TRIM28-213ENST00000598355 DCP1AQ9NPI6 582 aaPredicted RBP19.49■□□□□ 0.71
TRIM28-213ENST00000598355 MBD4O95243 580 aa19.48■□□□□ 0.71
TRIM28-213ENST00000598355 TBC1D8O95759 1140 aa19.48■□□□□ 0.71
TRIM28-213ENST00000598355 HLA-DOAP06340 250 aa19.48■□□□□ 0.71
TRIM28-213ENST00000598355 ZFYP08048 801 aaPredicted RBP19.48■□□□□ 0.71
TRIM28-213ENST00000598355 NUCB1Q02818 461 aa19.48■□□□□ 0.71
TRIM28-213ENST00000598355 FAM43AQ8N2R8 423 aa19.48■□□□□ 0.71
TRIM28-213ENST00000598355 PUS7LQ9H0K6 701 aaKnown RBP19.48■□□□□ 0.71
TRIM28-213ENST00000598355 R3HDMLQ9H3Y0 253 aa19.48■□□□□ 0.71
TRIM28-213ENST00000598355 ARMT1Q9H993 441 aa19.48■□□□□ 0.71
TRIM28-213ENST00000598355 PICK1Q9NRD5 415 aa19.48■□□□□ 0.71
TRIM28-213ENST00000598355 SAP30BPQ9UHR5 308 aaKnown RBP19.48■□□□□ 0.71
TRIM28-213ENST00000598355 AFG3L2Q9Y4W6 797 aa19.48■□□□□ 0.71
TRIM28-213ENST00000598355 CXCL11O14625 94 aa19.47■□□□□ 0.71
TRIM28-213ENST00000598355 GABPAQ06546 454 aa19.47■□□□□ 0.71
TRIM28-213ENST00000598355 OTUD7BQ6GQQ9 843 aa19.47■□□□□ 0.71
TRIM28-213ENST00000598355 SDR42E1Q8WUS8 393 aa19.47■□□□□ 0.71
TRIM28-213ENST00000598355 APPBP2Q92624 585 aa19.47■□□□□ 0.71
TRIM28-213ENST00000598355 TBC1D2Q9BYX2 928 aa19.47■□□□□ 0.71
TRIM28-213ENST00000598355 LNPKQ9C0E8 428 aa19.47■□□□□ 0.71
TRIM28-213ENST00000598355 TAOK2Q9UL54 1235 aa19.47■□□□□ 0.71
TRIM28-213ENST00000598355 GREB1LQ9C091 1923 aaPredicted RBP19.47■□□□□ 0.71
TRIM28-213ENST00000598355 A0A0G2JLL6 359 aaPredicted RBP19.46■□□□□ 0.71
TRIM28-213ENST00000598355 BTBD19C9JJ37 291 aa19.46■□□□□ 0.71
TRIM28-213ENST00000598355 GPR25O00155 361 aa19.46■□□□□ 0.71
TRIM28-213ENST00000598355 CRHR2Q13324 411 aa19.46■□□□□ 0.71
TRIM28-213ENST00000598355 TATDN1Q6P1N9 297 aa19.46■□□□□ 0.71
TRIM28-213ENST00000598355 PRRT2Q7Z6L0 340 aaPredicted RBP19.46■□□□□ 0.71
TRIM28-213ENST00000598355 TTC6Q86TZ1 520 aa19.46■□□□□ 0.71
TRIM28-213ENST00000598355 CHD1LQ86WJ1 897 aa19.46■□□□□ 0.71
TRIM28-213ENST00000598355 TNS4Q8IZW8 715 aa19.46■□□□□ 0.71
TRIM28-213ENST00000598355 OSBP2Q969R2 916 aa19.46■□□□□ 0.71
TRIM28-213ENST00000598355 ATP8A2Q9NTI2 1148 aa19.46■□□□□ 0.71
TRIM28-213ENST00000598355 GINM1Q9NU53 330 aa19.46■□□□□ 0.71
TRIM28-213ENST00000598355 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.46■□□□□ 0.71
TRIM28-213ENST00000598355 ZBTB47Q9UFB7 747 aaPredicted RBP19.46■□□□□ 0.71
TRIM28-213ENST00000598355 SERPINB13Q9UIV8 391 aa19.46■□□□□ 0.71
TRIM28-213ENST00000598355 HTTP42858 3142 aa19.45■□□□□ 0.7
TRIM28-213ENST00000598355 RNF113AO15541 343 aaKnown RBP19.45■□□□□ 0.7
TRIM28-213ENST00000598355 IRX6P78412 446 aaPredicted RBP19.45■□□□□ 0.7
TRIM28-213ENST00000598355 ZNF296Q8WUU4 475 aaPredicted RBP19.45■□□□□ 0.7
TRIM28-213ENST00000598355 OSBPL3Q9H4L5 887 aa19.45■□□□□ 0.7
TRIM28-213ENST00000598355 ZHX2Q9Y6X8 837 aa19.45■□□□□ 0.7
TRIM28-213ENST00000598355 PRKAB2O43741 272 aa19.44■□□□□ 0.7
TRIM28-213ENST00000598355 ASNSP08243 561 aa19.44■□□□□ 0.7
TRIM28-213ENST00000598355 PLCD1P51178 756 aa19.44■□□□□ 0.7
TRIM28-213ENST00000598355 JAG1P78504 1218 aa19.44■□□□□ 0.7
TRIM28-213ENST00000598355 ANKRD23Q86SG2 305 aa19.44■□□□□ 0.7
TRIM28-213ENST00000598355 CRACR2BQ8N4Y2 399 aaPredicted RBP19.44■□□□□ 0.7
TRIM28-213ENST00000598355 STRBPQ96SI9 672 aaKnown RBP19.44■□□□□ 0.7
TRIM28-213ENST00000598355 ADGRA2Q96PE1 1338 aa19.44■□□□□ 0.7
TRIM28-213ENST00000598355 ZSWIM8A7E2V4 1837 aa19.44■□□□□ 0.7
TRIM28-213ENST00000598355 SHMT1P34896 483 aa19.43■□□□□ 0.7
TRIM28-213ENST00000598355 EVX2Q03828 476 aa19.43■□□□□ 0.7
TRIM28-213ENST00000598355 SLC4A8Q2Y0W8 1093 aa19.43■□□□□ 0.7
TRIM28-213ENST00000598355 LRRFIP1Q32MZ4 808 aaKnown RBP19.43■□□□□ 0.7
TRIM28-213ENST00000598355 CCDC84Q86UT8 332 aaPredicted RBP19.43■□□□□ 0.7
TRIM28-213ENST00000598355 TICAM2Q86XR7 235 aa19.43■□□□□ 0.7
TRIM28-213ENST00000598355 MCM9Q9NXL9 1143 aa19.43■□□□□ 0.7
TRIM28-213ENST00000598355 ZBTB21Q9ULJ3 1066 aa19.43■□□□□ 0.7
TRIM28-213ENST00000598355 MGAMO43451 1857 aa19.43■□□□□ 0.7
TRIM28-213ENST00000598355 TAF1CQ15572 869 aaPredicted RBP19.42■□□□□ 0.7
TRIM28-213ENST00000598355 SHROOM1Q2M3G4 852 aaPredicted RBP19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms