RNA–Protein interactions for RNA: ENST00000580540.1

SREBF1-219, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 4

Gene SREBF1, Length 540 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-219ENST00000580540 CRACR2BQ8N4Y2 399 aaPredicted RBP20.16■□□□□ 0.82
SREBF1-219ENST00000580540 HAUS7Q99871 368 aa20.16■□□□□ 0.82
SREBF1-219ENST00000580540 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.16■□□□□ 0.82
SREBF1-219ENST00000580540 ZNF532Q9HCE3 1301 aa20.16■□□□□ 0.82
SREBF1-219ENST00000580540 TMED8Q6PL24 325 aaPredicted RBP20.15■□□□□ 0.82
SREBF1-219ENST00000580540 CCDC84Q86UT8 332 aaPredicted RBP20.15■□□□□ 0.82
SREBF1-219ENST00000580540 GPATCH3Q96I76 525 aa20.15■□□□□ 0.82
SREBF1-219ENST00000580540 ECHDC1Q9NTX5 307 aa20.15■□□□□ 0.82
SREBF1-219ENST00000580540 KCNH4Q9UQ05 1017 aa20.15■□□□□ 0.82
SREBF1-219ENST00000580540 COL2A1P02458 1487 aaPredicted RBP20.15■□□□□ 0.82
SREBF1-219ENST00000580540 LAMB1P07942 1786 aa20.14■□□□□ 0.81
SREBF1-219ENST00000580540 HLA-DOAP06340 250 aa20.14■□□□□ 0.81
SREBF1-219ENST00000580540 HERC5Q9UII4 1024 aaKnown RBP20.14■□□□□ 0.81
SREBF1-219ENST00000580540 TRIM75PA6NK02 468 aa20.13■□□□□ 0.81
SREBF1-219ENST00000580540 CXCL11O14625 94 aa20.13■□□□□ 0.81
SREBF1-219ENST00000580540 SP3Q02447 781 aa20.13■□□□□ 0.81
SREBF1-219ENST00000580540 SLFNL1Q499Z3 407 aa20.13■□□□□ 0.81
SREBF1-219ENST00000580540 TSHZ3Q63HK5 1081 aa20.13■□□□□ 0.81
SREBF1-219ENST00000580540 FOXP4Q8IVH2 680 aaPredicted RBP20.13■□□□□ 0.81
SREBF1-219ENST00000580540 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.13■□□□□ 0.816e-12■■■□□ 17.9
SREBF1-219ENST00000580540 ZBTB47Q9UFB7 747 aaPredicted RBP20.13■□□□□ 0.81
SREBF1-219ENST00000580540 PDHXO00330 501 aa20.12■□□□□ 0.81
SREBF1-219ENST00000580540 CAP2P40123 477 aa20.12■□□□□ 0.81
SREBF1-219ENST00000580540 RRP1BQ14684 758 aaKnown RBP20.12■□□□□ 0.81
SREBF1-219ENST00000580540 GADL1Q6ZQY3 521 aa20.12■□□□□ 0.81
SREBF1-219ENST00000580540 CD99L2Q8TCZ2 262 aa20.12■□□□□ 0.81
SREBF1-219ENST00000580540 ERO1AQ96HE7 468 aa20.12■□□□□ 0.81
SREBF1-219ENST00000580540 RIOK1Q9BRS2 568 aaKnown RBP20.12■□□□□ 0.81
SREBF1-219ENST00000580540 AFG3L2Q9Y4W6 797 aa20.12■□□□□ 0.81
SREBF1-219ENST00000580540 TRIM17Q9Y577 477 aa20.12■□□□□ 0.81
SREBF1-219ENST00000580540 CDK5RAP2Q96SN8 1893 aa20.11■□□□□ 0.81
SREBF1-219ENST00000580540 TCRBV5S4A2TA0A5A2 114 aa20.11■□□□□ 0.81
SREBF1-219ENST00000580540 ANKRD23Q86SG2 305 aa20.11■□□□□ 0.81
SREBF1-219ENST00000580540 CRNKL1Q9BZJ0 848 aaKnown RBP20.11■□□□□ 0.81
SREBF1-219ENST00000580540 ZCCHC17Q9NP64 241 aaKnown RBP20.11■□□□□ 0.81
SREBF1-219ENST00000580540 DOCK1Q14185 1865 aa20.1■□□□□ 0.81
SREBF1-219ENST00000580540 ADD2P35612 726 aa20.1■□□□□ 0.81
SREBF1-219ENST00000580540 PKN2Q16513 984 aaKnown RBP20.1■□□□□ 0.81
SREBF1-219ENST00000580540 FASTKD5Q7L8L6 764 aaKnown RBP20.1■□□□□ 0.81
SREBF1-219ENST00000580540 LCORLQ8N3X6 602 aa20.1■□□□□ 0.81
SREBF1-219ENST00000580540 ARMT1Q9H993 441 aa20.1■□□□□ 0.81
SREBF1-219ENST00000580540 A0A0G2JLL6 359 aaPredicted RBP20.09■□□□□ 0.81
SREBF1-219ENST00000580540 TLR2O60603 784 aa20.09■□□□□ 0.81
SREBF1-219ENST00000580540 ECM2O94769 699 aaPredicted RBP20.09■□□□□ 0.81
SREBF1-219ENST00000580540 GDF11O95390 407 aa20.09■□□□□ 0.81
SREBF1-219ENST00000580540 CHGBP05060 677 aa20.09■□□□□ 0.81
SREBF1-219ENST00000580540 POLR3DP05423 398 aaPredicted RBP20.09■□□□□ 0.81
SREBF1-219ENST00000580540 SPP2Q13103 211 aa20.09■□□□□ 0.81
SREBF1-219ENST00000580540 MOGSQ13724 837 aa20.09■□□□□ 0.81
SREBF1-219ENST00000580540 ANKRD45Q5TZF3 282 aa20.09■□□□□ 0.81
SREBF1-219ENST00000580540 ZSCAN25Q6NSZ9 544 aa20.09■□□□□ 0.81
SREBF1-219ENST00000580540 PRRT2Q7Z6L0 340 aaPredicted RBP20.09■□□□□ 0.81
SREBF1-219ENST00000580540 TTC6Q86TZ1 520 aa20.09■□□□□ 0.81
SREBF1-219ENST00000580540 DNAJC18Q9H819 358 aa20.09■□□□□ 0.81
SREBF1-219ENST00000580540 FOCADQ5VW36 1801 aa20.09■□□□□ 0.81
SREBF1-219ENST00000580540 USP17L5A8MUK1 530 aa20.08■□□□□ 0.81
SREBF1-219ENST00000580540 MBD4O95243 580 aa20.08■□□□□ 0.81
SREBF1-219ENST00000580540 GPAT2Q6NUI2 795 aa20.08■□□□□ 0.81
SREBF1-219ENST00000580540 OTUD7AQ8TE49 926 aaPredicted RBP20.08■□□□□ 0.81
SREBF1-219ENST00000580540 SDR42E1Q8WUS8 393 aa20.08■□□□□ 0.81
SREBF1-219ENST00000580540 EFCC1Q9HA90 598 aa20.08■□□□□ 0.81
SREBF1-219ENST00000580540 MCM9Q9NXL9 1143 aa20.08■□□□□ 0.81
SREBF1-219ENST00000580540 CPA4Q9UI42 421 aa20.08■□□□□ 0.81
SREBF1-219ENST00000580540 SUPT16HQ9Y5B9 1047 aaKnown RBP20.08■□□□□ 0.81
SREBF1-219ENST00000580540 MYH1P12882 1939 aa20.08■□□□□ 0.8
SREBF1-219ENST00000580540 FBXO46Q6PJ61 603 aaPredicted RBP20.07■□□□□ 0.8
SREBF1-219ENST00000580540 OTOP1Q7RTM1 612 aa20.07■□□□□ 0.8
SREBF1-219ENST00000580540 METTL16Q86W50 562 aaKnown RBP20.07■□□□□ 0.8
SREBF1-219ENST00000580540 ZNF280CQ8ND82 737 aa20.07■□□□□ 0.8
SREBF1-219ENST00000580540 EXOC6Q8TAG9 804 aa20.07■□□□□ 0.8
SREBF1-219ENST00000580540 AS3MTQ9HBK9 375 aa20.07■□□□□ 0.8
SREBF1-219ENST00000580540 SERPINB13Q9UIV8 391 aa20.07■□□□□ 0.8
SREBF1-219ENST00000580540 HPS5Q9UPZ3 1129 aa20.07■□□□□ 0.8
SREBF1-219ENST00000580540 SIPA1L1O43166 1804 aa20.06■□□□□ 0.8
SREBF1-219ENST00000580540 PRKAB2O43741 272 aa20.06■□□□□ 0.8
SREBF1-219ENST00000580540 ASNSP08243 561 aa20.06■□□□□ 0.8
SREBF1-219ENST00000580540 CYP2C8P10632 490 aa20.06■□□□□ 0.8
SREBF1-219ENST00000580540 PLCD1P51178 756 aa20.06■□□□□ 0.8
SREBF1-219ENST00000580540 JAG1P78504 1218 aa20.06■□□□□ 0.8
SREBF1-219ENST00000580540 KIF22Q14807 665 aa20.06■□□□□ 0.8
SREBF1-219ENST00000580540 UBE3CQ15386 1083 aa20.06■□□□□ 0.8
SREBF1-219ENST00000580540 SHROOM1Q2M3G4 852 aaPredicted RBP20.06■□□□□ 0.8
SREBF1-219ENST00000580540 PARK7Q99497 189 aaKnown RBP20.06■□□□□ 0.8
SREBF1-219ENST00000580540 ERC2O15083 957 aa20.05■□□□□ 0.8
SREBF1-219ENST00000580540 HMGCS2P54868 508 aa20.05■□□□□ 0.8
SREBF1-219ENST00000580540 HDAC1Q13547 482 aaPredicted RBP20.05■□□□□ 0.8
SREBF1-219ENST00000580540 ARHGEF6Q15052 776 aa20.05■□□□□ 0.8
SREBF1-219ENST00000580540 GCC1Q96CN9 775 aa20.05■□□□□ 0.8
SREBF1-219ENST00000580540 TBC1D2Q9BYX2 928 aa20.05■□□□□ 0.8
SREBF1-219ENST00000580540 DCP1AQ9NPI6 582 aaPredicted RBP20.05■□□□□ 0.8
SREBF1-219ENST00000580540 TTC41PQ6P2S7 1318 aa20.04■□□□□ 0.8
SREBF1-219ENST00000580540 CAP1Q01518 475 aa20.04■□□□□ 0.8
SREBF1-219ENST00000580540 AAMPQ13685 434 aa20.04■□□□□ 0.8
SREBF1-219ENST00000580540 KBTBD3Q8NAB2 608 aa20.04■□□□□ 0.8
SREBF1-219ENST00000580540 EHD4Q9H223 541 aa20.04■□□□□ 0.8
SREBF1-219ENST00000580540 ZBTB21Q9ULJ3 1066 aa20.04■□□□□ 0.8
SREBF1-219ENST00000580540 ATAD5Q96QE3 1844 aa20.04■□□□□ 0.8
SREBF1-219ENST00000580540 GH2P01242 217 aa20.03■□□□□ 0.8
SREBF1-219ENST00000580540 CYP2D6P10635 497 aa20.03■□□□□ 0.8
SREBF1-219ENST00000580540 MX1P20591 662 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms