RNA–Protein interactions for RNA: ENST00000566612.5

CDH1-210, Transcript of cadherin 1, humanhuman

TSL 1 (best)

Gene CDH1, Length 4,138 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-210ENST00000566612 USPL1Q5W0Q7 1092 aa13.19□□□□□ -0.3
CDH1-210ENST00000566612 SMIM5Q71RC9 77 aa13.19□□□□□ -0.3
CDH1-210ENST00000566612 CYB5R4Q7L1T6 521 aa13.19□□□□□ -0.3
CDH1-210ENST00000566612 IQUBQ8NA54 791 aa13.19□□□□□ -0.3
CDH1-210ENST00000566612 KIAA1524Q8TCG1 905 aa13.19□□□□□ -0.3
CDH1-210ENST00000566612 GOLPH3LQ9H4A5 285 aa13.19□□□□□ -0.3
CDH1-210ENST00000566612 POLR3GO15318 223 aaPredicted RBP13.18□□□□□ -0.3
CDH1-210ENST00000566612 CYP19A1P11511 503 aaPredicted RBP13.18□□□□□ -0.3
CDH1-210ENST00000566612 TNNT3P45378 269 aaPredicted RBP13.18□□□□□ -0.3
CDH1-210ENST00000566612 EIF6P56537 245 aaKnown RBP13.18□□□□□ -0.3
CDH1-210ENST00000566612 GSTO1P78417 241 aa13.18□□□□□ -0.3
CDH1-210ENST00000566612 TFAP4Q01664 338 aa13.18□□□□□ -0.3
CDH1-210ENST00000566612 TRAPPC3LQ5T215 181 aa13.18□□□□□ -0.3
CDH1-210ENST00000566612 PCDHA5Q9Y5H7 936 aa13.18□□□□□ -0.3
CDH1-210ENST00000566612 SH2B2O14492 632 aaPredicted RBP13.18□□□□□ -0.3
CDH1-210ENST00000566612 ERFEQ4G0M1 354 aa13.18□□□□□ -0.3
CDH1-210ENST00000566612 ZNF804AQ7Z570 1209 aa13.18□□□□□ -0.3
CDH1-210ENST00000566612 LRRC8AQ8IWT6 810 aa13.18□□□□□ -0.3
CDH1-210ENST00000566612 FANCLQ9NW38 375 aa13.18□□□□□ -0.3
CDH1-210ENST00000566612 COL9A3Q14050 684 aaPredicted RBP13.18□□□□□ -0.3
CDH1-210ENST00000566612 TTC38Q5R3I4 469 aa13.18□□□□□ -0.3
CDH1-210ENST00000566612 MAPKAPK5Q8IW41 473 aa13.18□□□□□ -0.3
CDH1-210ENST00000566612 BCL2L12Q9HB09 334 aa13.18□□□□□ -0.3
CDH1-210ENST00000566612 CALML3P27482 149 aa13.17□□□□□ -0.3
CDH1-210ENST00000566612 ZNF76P36508 570 aa13.17□□□□□ -0.3
CDH1-210ENST00000566612 GNAQP50148 359 aa13.17□□□□□ -0.3
CDH1-210ENST00000566612 DNA2P51530 1060 aa13.17□□□□□ -0.3
CDH1-210ENST00000566612 SLF2Q8IX21 1173 aa13.17□□□□□ -0.3
CDH1-210ENST00000566612 CNBD1Q8NA66 436 aa13.17□□□□□ -0.3
CDH1-210ENST00000566612 ZNF622Q969S3 477 aaKnown RBP eCLIP13.17□□□□□ -0.3
CDH1-210ENST00000566612 POLR3EQ9NVU0 708 aa13.17□□□□□ -0.3
CDH1-210ENST00000566612 RNF216Q9NWF9 866 aaPredicted RBP13.17□□□□□ -0.3
CDH1-210ENST00000566612 A0A1W2PQ27 194 aa13.17□□□□□ -0.3
CDH1-210ENST00000566612 A0A1W2PQ64 194 aa13.17□□□□□ -0.3
CDH1-210ENST00000566612 A0A1W2PQD8 194 aa13.17□□□□□ -0.3
CDH1-210ENST00000566612 DTHD1Q6ZMT9 781 aa13.17□□□□□ -0.3
CDH1-210ENST00000566612 VPS16Q9H269 839 aa13.17□□□□□ -0.3
CDH1-210ENST00000566612 BLZF1Q9H2G9 400 aa13.17□□□□□ -0.3
CDH1-210ENST00000566612 RBM28Q9NW13 759 aaKnown RBP13.17□□□□□ -0.3
CDH1-210ENST00000566612 TERF1P54274 439 aa13.17□□□□□ -0.3
CDH1-210ENST00000566612 ST5P78524 1137 aa13.17□□□□□ -0.3
CDH1-210ENST00000566612 EXOSC10Q01780 885 aaKnown RBP13.17□□□□□ -0.3
CDH1-210ENST00000566612 LETM2Q2VYF4 491 aa13.17□□□□□ -0.3
CDH1-210ENST00000566612 CALML4Q96GE6 196 aa13.17□□□□□ -0.3
CDH1-210ENST00000566612 ZSCAN10Q96SZ4 725 aaPredicted RBP13.17□□□□□ -0.3
CDH1-210ENST00000566612 BAG1Q99933 345 aaPredicted RBP13.17□□□□□ -0.3
CDH1-210ENST00000566612 RIPOR2Q9Y4F9 1068 aa13.17□□□□□ -0.3
CDH1-210ENST00000566612 UFL1O94874 794 aa13.16□□□□□ -0.3
CDH1-210ENST00000566612 TMEM266Q2M3C6 531 aa13.16□□□□□ -0.3
CDH1-210ENST00000566612 TEX11Q8IYF3 940 aa13.16□□□□□ -0.3
CDH1-210ENST00000566612 GRAMD1CQ8IYS0 662 aa13.16□□□□□ -0.3
CDH1-210ENST00000566612 TGFBRAP1Q8WUH2 860 aa13.16□□□□□ -0.3
CDH1-210ENST00000566612 ZHX1Q9UKY1 873 aaPredicted RBP13.16□□□□□ -0.3
CDH1-210ENST00000566612 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.16□□□□□ -0.3
CDH1-210ENST00000566612 ERVV-1B6SEH8 477 aa13.16□□□□□ -0.3
CDH1-210ENST00000566612 U2AF2P26368 475 aaKnown RBP eCLIP13.16□□□□□ -0.3
CDH1-210ENST00000566612 ASIC1P78348 528 aa13.16□□□□□ -0.3
CDH1-210ENST00000566612 SMARCC2Q8TAQ2 1214 aa13.16□□□□□ -0.3
CDH1-210ENST00000566612 PPP1R1BQ9UD71 204 aaPredicted RBP13.16□□□□□ -0.3
CDH1-210ENST00000566612 GOLGA8FQ08AF8 430 aa13.16□□□□□ -0.3
CDH1-210ENST00000566612 GOLGA8DPQ0D2H9 430 aa13.16□□□□□ -0.3
CDH1-210ENST00000566612 FKBP15Q5T1M5 1219 aa13.16□□□□□ -0.3
CDH1-210ENST00000566612 CCDC148Q8NFR7 591 aa13.16□□□□□ -0.3
CDH1-210ENST00000566612 MRFAP1L1Q96HT8 127 aa13.16□□□□□ -0.3
CDH1-210ENST00000566612 UIMC1Q96RL1 719 aa13.16□□□□□ -0.3
CDH1-210ENST00000566612 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.16□□□□□ -0.3
CDH1-210ENST00000566612 MEGF6O75095 1541 aa13.16□□□□□ -0.3
CDH1-210ENST00000566612 COBLO75128 1261 aa13.15□□□□□ -0.3
CDH1-210ENST00000566612 TRIM21P19474 475 aaKnown RBP13.15□□□□□ -0.3
CDH1-210ENST00000566612 ADKP55263 362 aaKnown RBP13.15□□□□□ -0.3
CDH1-210ENST00000566612 KRBA2Q6ZNG9 492 aa13.15□□□□□ -0.3
CDH1-210ENST00000566612 TRMT1LQ7Z2T5 733 aaKnown RBP13.15□□□□□ -0.3
CDH1-210ENST00000566612 MB21D2Q8IYB1 491 aaPredicted RBP13.15□□□□□ -0.3
CDH1-210ENST00000566612 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.15□□□□□ -0.3
CDH1-210ENST00000566612 UBA5Q9GZZ9 404 aa13.15□□□□□ -0.3
CDH1-210ENST00000566612 ZMYND15Q9H091 742 aa13.15□□□□□ -0.3
CDH1-210ENST00000566612 TRIM28Q13263 835 aaKnown RBP13.15□□□□□ -0.3
CDH1-210ENST00000566612 NEDD4P46934 1319 aa13.15□□□□□ -0.3
CDH1-210ENST00000566612 CDC27P30260 824 aa13.15□□□□□ -0.3
CDH1-210ENST00000566612 ZNF397Q8NF99 534 aaPredicted RBP13.15□□□□□ -0.3
CDH1-210ENST00000566612 CEP89Q96ST8 783 aa13.15□□□□□ -0.3
CDH1-210ENST00000566612 RAB34Q9BZG1 259 aa13.15□□□□□ -0.3
CDH1-210ENST00000566612 EXOC1Q9NV70 894 aa13.15□□□□□ -0.3
CDH1-210ENST00000566612 CTNND2Q9UQB3 1225 aa13.15□□□□□ -0.3
CDH1-210ENST00000566612 RIMS1Q86UR5 1692 aaKnown RBP13.15□□□□□ -0.3
CDH1-210ENST00000566612 FAM193AP78312 1265 aa13.15□□□□□ -0.31
CDH1-210ENST00000566612 CACNA2D4Q7Z3S7 1137 aa13.15□□□□□ -0.31
CDH1-210ENST00000566612 MLKLQ8NB16 471 aa13.15□□□□□ -0.31
CDH1-210ENST00000566612 ZC3H12CQ9C0D7 883 aaKnown RBP13.15□□□□□ -0.31
CDH1-210ENST00000566612 RMND1Q9NWS8 449 aa13.15□□□□□ -0.31
CDH1-210ENST00000566612 KDM6AO15550 1401 aaPredicted RBP13.14□□□□□ -0.31
CDH1-210ENST00000566612 TNNI2P48788 182 aa13.14□□□□□ -0.31
CDH1-210ENST00000566612 ST3GAL1Q11201 340 aa13.14□□□□□ -0.31
CDH1-210ENST00000566612 CCDC181Q5TID7 509 aa13.14□□□□□ -0.31
CDH1-210ENST00000566612 IGSF22Q8N9C0 903 aa13.14□□□□□ -0.31
CDH1-210ENST00000566612 CTAGE1Q96RT6 745 aa13.14□□□□□ -0.31
CDH1-210ENST00000566612 ALDH8A1Q9H2A2 487 aaPredicted RBP13.14□□□□□ -0.31
CDH1-210ENST00000566612 ACBD3Q9H3P7 528 aa13.14□□□□□ -0.31
CDH1-210ENST00000566612 SRP68Q9UHB9 627 aaKnown RBP13.14□□□□□ -0.31
CDH1-210ENST00000566612 KCNQ2O43526 872 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms