RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 BRF1Q92994 677 aa36.07■■■■□ 3.36
CTCF-203ENST00000566078 DYNLL2Q96FJ2 89 aa36.07■■■■□ 3.36
CTCF-203ENST00000566078 ESR2Q92731 530 aa36.06■■■■□ 3.36
CTCF-203ENST00000566078 AGXT2Q9BYV1 514 aa36.06■■■■□ 3.36
CTCF-203ENST00000566078 TMOD2Q9NZR1 351 aa36.06■■■■□ 3.36
CTCF-203ENST00000566078 TPCN1Q9ULQ1 816 aa36.06■■■■□ 3.36
CTCF-203ENST00000566078 ORC4O43929 436 aa36.05■■■■□ 3.36
CTCF-203ENST00000566078 MICALL2Q8IY33 904 aa36.05■■■■□ 3.36
CTCF-203ENST00000566078 ZSWIM5Q9P217 1185 aa36.05■■■■□ 3.36
CTCF-203ENST00000566078 FAM198AQ9UFP1 575 aa36.05■■■■□ 3.36
CTCF-203ENST00000566078 LARGE1O95461 756 aa36.05■■■■□ 3.36
CTCF-203ENST00000566078 C9orf131Q5VYM1 1079 aa36.05■■■■□ 3.36
CTCF-203ENST00000566078 GPC2Q8N158 579 aa36.05■■■■□ 3.36
CTCF-203ENST00000566078 ZSCAN31Q96LW9 406 aaPredicted RBP36.05■■■■□ 3.36
CTCF-203ENST00000566078 NPM3O75607 178 aaKnown RBP36.04■■■■□ 3.36
CTCF-203ENST00000566078 TCP10Q12799 353 aa36.04■■■■□ 3.36
CTCF-203ENST00000566078 TTC6Q86TZ1 520 aa36.04■■■■□ 3.36
CTCF-203ENST00000566078 ZBED3Q96IU2 234 aaPredicted RBP36.04■■■■□ 3.36
CTCF-203ENST00000566078 FOXD4L1Q9NU39 408 aa36.04■■■■□ 3.36
CTCF-203ENST00000566078 ZNF70Q9UC06 446 aaPredicted RBP36.04■■■■□ 3.36
CTCF-203ENST00000566078 CLRN2A0PK11 232 aa36.03■■■■□ 3.36
CTCF-203ENST00000566078 SPDYE2Q495Y8 402 aa36.03■■■■□ 3.36
CTCF-203ENST00000566078 FBXL16Q8N461 479 aa36.03■■■■□ 3.36
CTCF-203ENST00000566078 GPHNQ9NQX3 736 aaPredicted RBP36.03■■■■□ 3.36
CTCF-203ENST00000566078 CNOT7Q9UIV1 285 aaKnown RBP36.03■■■■□ 3.36
CTCF-203ENST00000566078 RANBP6O60518 1105 aaKnown RBP36.02■■■■□ 3.36
CTCF-203ENST00000566078 ZFPM1Q8IX07 1006 aa36.02■■■■□ 3.36
CTCF-203ENST00000566078 SH2B1Q9NRF2 756 aaPredicted RBP36.02■■■■□ 3.36
CTCF-203ENST00000566078 APOBRQ0VD83 1088 aa36.01■■■■□ 3.36
CTCF-203ENST00000566078 ME3Q16798 604 aa36.01■■■■□ 3.36
CTCF-203ENST00000566078 TMEM87BQ96K49 555 aa36.01■■■■□ 3.36
CTCF-203ENST00000566078 COL2A1P02458 1487 aaPredicted RBP36.01■■■■□ 3.35
CTCF-203ENST00000566078 SH2B2O14492 632 aaPredicted RBP36.01■■■■□ 3.35
CTCF-203ENST00000566078 MYO1BO43795 1136 aa36.01■■■■□ 3.35
CTCF-203ENST00000566078 CUL4AQ13619 759 aa36.01■■■■□ 3.35
CTCF-203ENST00000566078 C16orf86Q6ZW13 317 aa36.01■■■■□ 3.35
CTCF-203ENST00000566078 SLC44A5Q8NCS7 719 aa36.01■■■■□ 3.35
CTCF-203ENST00000566078 WNT10BO00744 389 aa36■■■■□ 3.35
CTCF-203ENST00000566078 GRIN3BO60391 1043 aa36■■■■□ 3.35
CTCF-203ENST00000566078 ENTPD3O75355 529 aa36■■■■□ 3.35
CTCF-203ENST00000566078 HLA-DOAP06340 250 aa36■■■■□ 3.35
CTCF-203ENST00000566078 SLKQ9H2G2 1235 aaPredicted RBP36■■■■□ 3.35
CTCF-203ENST00000566078 MKNK2Q9HBH9 465 aa36■■■■□ 3.35
CTCF-203ENST00000566078 NBPF9Q3BBW0 867 aa35.99■■■■□ 3.35
CTCF-203ENST00000566078 RBM26Q5T8P6 1007 aaKnown RBP35.99■■■■□ 3.35
CTCF-203ENST00000566078 ZNF287Q9HBT7 754 aa35.99■■■■□ 3.35
CTCF-203ENST00000566078 ANGEL1Q9UNK9 670 aaKnown RBP35.99■■■■□ 3.35
CTCF-203ENST00000566078 TCP10L2B9ZVM9 353 aa35.98■■■■□ 3.35
CTCF-203ENST00000566078 ZKSCAN3Q9BRR0 538 aa35.98■■■■□ 3.35
CTCF-203ENST00000566078 DHX36Q9H2U1 1008 aaKnown RBP35.98■■■■□ 3.35
CTCF-203ENST00000566078 VEZTQ9HBM0 779 aa35.98■■■■□ 3.35
CTCF-203ENST00000566078 IFIT3O14879 490 aaKnown RBP35.97■■■■□ 3.35
CTCF-203ENST00000566078 EGFRP00533 1210 aa35.97■■■■□ 3.35
CTCF-203ENST00000566078 CDK8P49336 464 aa35.97■■■■□ 3.35
CTCF-203ENST00000566078 SART3Q15020 963 aaKnown RBP35.97■■■■□ 3.35
CTCF-203ENST00000566078 TMEM67Q5HYA8 995 aa35.97■■■■□ 3.35
CTCF-203ENST00000566078 SAMD7Q7Z3H4 446 aa35.97■■■■□ 3.35
CTCF-203ENST00000566078 ZSCAN29Q8IWY8 852 aaPredicted RBP35.97■■■■□ 3.35
CTCF-203ENST00000566078 IGDCC4Q8TDY8 1250 aa35.97■■■■□ 3.35
CTCF-203ENST00000566078 UBAC1Q9BSL1 405 aa35.97■■■■□ 3.35
CTCF-203ENST00000566078 TBC1D10BQ4KMP7 808 aaPredicted RBP35.96■■■■□ 3.35
CTCF-203ENST00000566078 FAM47AQ5JRC9 791 aa35.96■■■■□ 3.35
CTCF-203ENST00000566078 MTA3Q9BTC8 594 aa35.96■■■■□ 3.35
CTCF-203ENST00000566078 LY9Q9HBG7 655 aa35.96■■■■□ 3.35
CTCF-203ENST00000566078 GPRC5DQ9NZD1 345 aa35.96■■■■□ 3.35
CTCF-203ENST00000566078 ATRNL1Q5VV63 1379 aa35.96■■■■□ 3.35
CTCF-203ENST00000566078 DDTLA6NHG4 134 aaPredicted RBP35.95■■■■□ 3.35
CTCF-203ENST00000566078 H7C1D1 291 aa35.95■■■■□ 3.35
CTCF-203ENST00000566078 NT5C2P49902 561 aa35.95■■■■□ 3.35
CTCF-203ENST00000566078 STK3Q13188 491 aa35.95■■■■□ 3.35
CTCF-203ENST00000566078 KIF4BQ2VIQ3 1234 aa35.95■■■■□ 3.35
CTCF-203ENST00000566078 SH3BP5LQ7L8J4 393 aa35.95■■■■□ 3.35
CTCF-203ENST00000566078 CCDC83Q8IWF9 413 aa35.95■■■■□ 3.35
CTCF-203ENST00000566078 SERPINB13Q9UIV8 391 aa35.95■■■■□ 3.35
CTCF-203ENST00000566078 ERICH2A1L162 156 aa35.94■■■■□ 3.34
CTCF-203ENST00000566078 TSPY2A6NKD2 308 aa35.94■■■■□ 3.34
CTCF-203ENST00000566078 GABPAQ06546 454 aa35.94■■■■□ 3.34
CTCF-203ENST00000566078 NECAB1Q8N987 351 aa35.94■■■■□ 3.34
CTCF-203ENST00000566078 NAP1L2Q9ULW6 460 aaPredicted RBP35.94■■■■□ 3.34
CTCF-203ENST00000566078 TNKSO95271 1327 aa35.94■■■■□ 3.34
CTCF-203ENST00000566078 DDNO94850 711 aaPredicted RBP35.94■■■■□ 3.34
CTCF-203ENST00000566078 RASA1P20936 1047 aa35.94■■■■□ 3.34
CTCF-203ENST00000566078 FKBP1CQ5VVH2 108 aa35.94■■■■□ 3.34
CTCF-203ENST00000566078 IQCA1Q86XH1 822 aa35.94■■■■□ 3.34
CTCF-203ENST00000566078 EHD4Q9H223 541 aa35.94■■■■□ 3.34
CTCF-203ENST00000566078 CNTNAP1P78357 1384 aa35.93■■■■□ 3.34
CTCF-203ENST00000566078 KLF18A0A0U1RQI7 1052 aa35.93■■■■□ 3.34
CTCF-203ENST00000566078 EVCP57679 992 aa35.93■■■■□ 3.34
CTCF-203ENST00000566078 ST3GAL1Q11201 340 aa35.93■■■■□ 3.34
CTCF-203ENST00000566078 WTAPQ15007 396 aa35.93■■■■□ 3.34
CTCF-203ENST00000566078 ZNF444Q8N0Y2 327 aaPredicted RBP35.93■■■■□ 3.34
CTCF-203ENST00000566078 SENP2Q9HC62 589 aa35.93■■■■□ 3.34
CTCF-203ENST00000566078 LIFRP42702 1097 aa35.92■■■■□ 3.34
CTCF-203ENST00000566078 INTS4Q96HW7 963 aaKnown RBP35.92■■■■□ 3.34
CTCF-203ENST00000566078 ZSCAN10Q96SZ4 725 aaPredicted RBP35.92■■■■□ 3.34
CTCF-203ENST00000566078 SWAP70Q9UH65 585 aa35.92■■■■□ 3.34
CTCF-203ENST00000566078 BRPF3Q9ULD4 1205 aa35.92■■■■□ 3.34
CTCF-203ENST00000566078 GREB1LQ9C091 1923 aaPredicted RBP35.92■■■■□ 3.34
CTCF-203ENST00000566078 TFAP4Q01664 338 aa35.91■■■■□ 3.34
CTCF-203ENST00000566078 NFXL1Q6ZNB6 911 aa35.91■■■■□ 3.34
Retrieved 100 of 20,778 RNA–protein pairs in 191 ms