RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 PDE1AP54750 535 aa14.25□□□□□ -0.13
LDLR-212ENST00000560467 FCGRTP55899 365 aa14.25□□□□□ -0.13
LDLR-212ENST00000560467 PLEKHM2Q8IWE5 1019 aa14.25□□□□□ -0.13
LDLR-212ENST00000560467 RNF208Q9H0X6 261 aa14.25□□□□□ -0.13
LDLR-212ENST00000560467 OSBPL3Q9H4L5 887 aa14.25□□□□□ -0.13
LDLR-212ENST00000560467 RBM27Q9P2N5 1060 aaKnown RBP14.25□□□□□ -0.13
LDLR-212ENST00000560467 STAP2Q9UGK3 403 aa14.25□□□□□ -0.13
LDLR-212ENST00000560467 GABRQQ9UN88 632 aa14.25□□□□□ -0.13
LDLR-212ENST00000560467 RFX7Q2KHR2 1363 aa14.24□□□□□ -0.13
LDLR-212ENST00000560467 SZT2Q5T011 3432 aa14.24□□□□□ -0.13
LDLR-212ENST00000560467 CXCL11O14625 94 aa14.24□□□□□ -0.13
LDLR-212ENST00000560467 PDE4AP27815 886 aa14.24□□□□□ -0.13
LDLR-212ENST00000560467 SH3BP5LQ7L8J4 393 aa14.24□□□□□ -0.13
LDLR-212ENST00000560467 SCYL3Q8IZE3 742 aa14.24□□□□□ -0.13
LDLR-212ENST00000560467 NKX2-3Q8TAU0 364 aa14.24□□□□□ -0.13
LDLR-212ENST00000560467 EAF2Q96CJ1 260 aaPredicted RBP14.24□□□□□ -0.13
LDLR-212ENST00000560467 CCDC8Q9H0W5 538 aaPredicted RBP14.24□□□□□ -0.13
LDLR-212ENST00000560467 UNC93B1Q9H1C4 597 aa14.24□□□□□ -0.13
LDLR-212ENST00000560467 PICK1Q9NRD5 415 aa14.24□□□□□ -0.13
LDLR-212ENST00000560467 GNL3LQ9NVN8 582 aaKnown RBP14.24□□□□□ -0.13
LDLR-212ENST00000560467 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.24□□□□□ -0.13
LDLR-212ENST00000560467 ZHX2Q9Y6X8 837 aa14.24□□□□□ -0.13
LDLR-212ENST00000560467 SALL1Q9NSC2 1324 aa14.23□□□□□ -0.13
LDLR-212ENST00000560467 A0A0G2JLL6 359 aaPredicted RBP14.23□□□□□ -0.13
LDLR-212ENST00000560467 A0A1B0GUL7 405 aa14.23□□□□□ -0.13
LDLR-212ENST00000560467 TRIM6-TRIM34B2RNG4 842 aa14.23□□□□□ -0.13
LDLR-212ENST00000560467 FARP2O94887 1054 aaPredicted RBP14.23□□□□□ -0.13
LDLR-212ENST00000560467 PTPRAP18433 802 aa14.23□□□□□ -0.13
LDLR-212ENST00000560467 BMP2KLQ5H9B9 411 aa14.23□□□□□ -0.13
LDLR-212ENST00000560467 GADL1Q6ZQY3 521 aa14.23□□□□□ -0.13
LDLR-212ENST00000560467 PRRT2Q7Z6L0 340 aaPredicted RBP14.23□□□□□ -0.13
LDLR-212ENST00000560467 CCDC84Q86UT8 332 aaPredicted RBP14.23□□□□□ -0.13
LDLR-212ENST00000560467 U2AF1L4Q8WU68 220 aaKnown RBP14.23□□□□□ -0.13
LDLR-212ENST00000560467 DENND2AQ9ULE3 1009 aa14.23□□□□□ -0.13
LDLR-212ENST00000560467 GAKO14976 1311 aa14.22□□□□□ -0.13
LDLR-212ENST00000560467 ELNP15502 786 aa14.22□□□□□ -0.13
LDLR-212ENST00000560467 TIMM10P62072 90 aa14.22□□□□□ -0.13
LDLR-212ENST00000560467 UBXN2AP68543 259 aa14.22□□□□□ -0.13
LDLR-212ENST00000560467 TTC39AQ5SRH9 613 aa14.22□□□□□ -0.13
LDLR-212ENST00000560467 TTC22Q5TAA0 569 aa14.22□□□□□ -0.13
LDLR-212ENST00000560467 ZSCAN29Q8IWY8 852 aaPredicted RBP14.22□□□□□ -0.13
LDLR-212ENST00000560467 SLAIN1Q8ND83 568 aa14.22□□□□□ -0.13
LDLR-212ENST00000560467 IDI2Q9BXS1 227 aa14.22□□□□□ -0.13
LDLR-212ENST00000560467 DDX4Q9NQI0 724 aaKnown RBP14.22□□□□□ -0.13
LDLR-212ENST00000560467 DDTLA6NHG4 134 aaPredicted RBP14.21□□□□□ -0.13
LDLR-212ENST00000560467 TRIM75PA6NK02 468 aa14.21□□□□□ -0.13
LDLR-212ENST00000560467 SEMA3EO15041 775 aa14.21□□□□□ -0.13
LDLR-212ENST00000560467 ADCY3O60266 1144 aa14.21□□□□□ -0.13
LDLR-212ENST00000560467 ENTPD3O75355 529 aa14.21□□□□□ -0.13
LDLR-212ENST00000560467 UQCRFS1P1P0C7P4 283 aa14.21□□□□□ -0.13
LDLR-212ENST00000560467 FLT3LGP49771 235 aa14.21□□□□□ -0.13
LDLR-212ENST00000560467 PICALMQ13492 652 aa14.21□□□□□ -0.13
LDLR-212ENST00000560467 RASGRF1Q13972 1273 aa14.21□□□□□ -0.13
LDLR-212ENST00000560467 LRRFIP1Q32MZ4 808 aaKnown RBP14.21□□□□□ -0.13
LDLR-212ENST00000560467 CCDC102BQ68D86 513 aa14.21□□□□□ -0.13
LDLR-212ENST00000560467 FASTKD5Q7L8L6 764 aaKnown RBP14.21□□□□□ -0.13
LDLR-212ENST00000560467 SKAP1Q86WV1 359 aa14.21□□□□□ -0.13
LDLR-212ENST00000560467 HTATIP2Q9BUP3 242 aa14.21□□□□□ -0.13
LDLR-212ENST00000560467 AFG3L2Q9Y4W6 797 aa14.21□□□□□ -0.13
LDLR-212ENST00000560467 INHAP05111 366 aa14.2□□□□□ -0.14
LDLR-212ENST00000560467 ATP5JP18859 108 aa14.2□□□□□ -0.14
LDLR-212ENST00000560467 DZIP1Q86YF9 867 aaKnown RBP14.2□□□□□ -0.14
LDLR-212ENST00000560467 OTUD7AQ8TE49 926 aaPredicted RBP14.2□□□□□ -0.14
LDLR-212ENST00000560467 RILPL2Q969X0 211 aa14.2□□□□□ -0.14
LDLR-212ENST00000560467 XAGE2Q96GT9 111 aa14.2□□□□□ -0.14
LDLR-212ENST00000560467 PRO3102Q9H379 93 aa14.2□□□□□ -0.14
LDLR-212ENST00000560467 UPF2Q9HAU5 1272 aaKnown RBP14.2□□□□□ -0.14
LDLR-212ENST00000560467 TNPO2O14787 897 aaKnown RBP14.19□□□□□ -0.14
LDLR-212ENST00000560467 BTDP43251 543 aa14.19□□□□□ -0.14
LDLR-212ENST00000560467 MAP3K10Q02779 954 aa14.19□□□□□ -0.14
LDLR-212ENST00000560467 SMCR8Q8TEV9 937 aaPredicted RBP14.19□□□□□ -0.14
LDLR-212ENST00000560467 DBNDD2Q9BQY9 259 aa14.19□□□□□ -0.14
LDLR-212ENST00000560467 ABCF2Q9UG63 623 aa14.19□□□□□ -0.14
LDLR-212ENST00000560467 TAOK2Q9UL54 1235 aa14.19□□□□□ -0.14
LDLR-212ENST00000560467 FAM196BA6NMK8 535 aa14.18□□□□□ -0.14
LDLR-212ENST00000560467 HIP1O00291 1037 aa14.18□□□□□ -0.14
LDLR-212ENST00000560467 CTNND1O60716 968 aaKnown RBP14.18□□□□□ -0.14
LDLR-212ENST00000560467 CDC45O75419 566 aa14.18□□□□□ -0.14
LDLR-212ENST00000560467 SGPL1O95470 568 aa14.18□□□□□ -0.14
LDLR-212ENST00000560467 TREML2Q5T2D2 321 aa14.18□□□□□ -0.14
LDLR-212ENST00000560467 ZGPATQ8N5A5 531 aaKnown RBP14.18□□□□□ -0.14
LDLR-212ENST00000560467 ANKRD13CQ8N6S4 541 aa14.18□□□□□ -0.14
LDLR-212ENST00000560467 EVI5LQ96CN4 794 aa14.18□□□□□ -0.14
LDLR-212ENST00000560467 DEFB118Q96PH6 123 aa14.18□□□□□ -0.14
LDLR-212ENST00000560467 DBNLQ9UJU6 430 aaKnown RBP14.18□□□□□ -0.14
LDLR-212ENST00000560467 SLC45A1Q9Y2W3 748 aa14.18□□□□□ -0.14
LDLR-212ENST00000560467 NR2E3Q9Y5X4 410 aa14.18□□□□□ -0.14
LDLR-212ENST00000560467 MROH7-TTC4A0A0A0MT08 1334 aa14.17□□□□□ -0.14
LDLR-212ENST00000560467 RHBDL3P58872 404 aa14.17□□□□□ -0.14
LDLR-212ENST00000560467 ZNF384Q8TF68 577 aa14.17□□□□□ -0.14
LDLR-212ENST00000560467 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.17□□□□□ -0.14
LDLR-212ENST00000560467 BOLA2Q9H3K6 86 aa14.17□□□□□ -0.14
LDLR-212ENST00000560467 AGTPBP1Q9UPW5 1226 aa14.17□□□□□ -0.14
LDLR-212ENST00000560467 ZBTB22O15209 634 aa14.16□□□□□ -0.14
LDLR-212ENST00000560467 TFRCP02786 760 aaKnown RBP14.16□□□□□ -0.14
LDLR-212ENST00000560467 SDSP20132 328 aa14.16□□□□□ -0.14
LDLR-212ENST00000560467 MECOMQ03112 1051 aa14.16□□□□□ -0.14
LDLR-212ENST00000560467 IRF5Q13568 498 aa14.16□□□□□ -0.14
LDLR-212ENST00000560467 TTF1Q15361 905 aaPredicted RBP14.16□□□□□ -0.14
LDLR-212ENST00000560467 TSHZ3Q63HK5 1081 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms