RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 JAKMIP3Q5VZ66 844 aa20.06■□□□□ 0.8
SYNE3-202ENST00000553340 LDHAL6AQ6ZMR3 332 aa20.06■□□□□ 0.8
SYNE3-202ENST00000553340 TRMT44Q8IYL2 757 aaKnown RBP20.06■□□□□ 0.8
SYNE3-202ENST00000553340 TXLNBQ8N3L3 684 aa20.06■□□□□ 0.8
SYNE3-202ENST00000553340 FBXO2Q9UK22 296 aaPredicted RBP20.06■□□□□ 0.8
SYNE3-202ENST00000553340 TBC1D2BQ9UPU7 963 aa20.06■□□□□ 0.8
SYNE3-202ENST00000553340 RIPOR2Q9Y4F9 1068 aa20.06■□□□□ 0.8
SYNE3-202ENST00000553340 KCPQ6ZWJ8 1503 aa20.05■□□□□ 0.8
SYNE3-202ENST00000553340 RIC1Q4ADV7 1423 aa20.05■□□□□ 0.8
SYNE3-202ENST00000553340 MMP1P03956 469 aa20.05■□□□□ 0.8
SYNE3-202ENST00000553340 CCDC175P0C221 793 aa20.05■□□□□ 0.8
SYNE3-202ENST00000553340 PRR29P0C7W0 189 aa20.05■□□□□ 0.8
SYNE3-202ENST00000553340 TOB1P50616 345 aaPredicted RBP20.05■□□□□ 0.8
SYNE3-202ENST00000553340 KANK3Q6NY19 840 aa20.05■□□□□ 0.8
SYNE3-202ENST00000553340 DIS3L2Q8IYB7 885 aaKnown RBP20.05■□□□□ 0.8
SYNE3-202ENST00000553340 CCDC12Q8WUD4 166 aaPredicted RBP20.05■□□□□ 0.8
SYNE3-202ENST00000553340 DHX58Q96C10 678 aa20.05■□□□□ 0.8
SYNE3-202ENST00000553340 PIH1D3Q9NQM4 214 aaKnown RBP20.05■□□□□ 0.8
SYNE3-202ENST00000553340 AKAP11Q9UKA4 1901 aa20.05■□□□□ 0.8
SYNE3-202ENST00000553340 IFIT3O14879 490 aaKnown RBP20.05■□□□□ 0.8
SYNE3-202ENST00000553340 IFNAR1P17181 557 aa20.05■□□□□ 0.8
SYNE3-202ENST00000553340 GPS2Q13227 327 aa20.05■□□□□ 0.8
SYNE3-202ENST00000553340 NR1I3Q14994 352 aa20.05■□□□□ 0.8
SYNE3-202ENST00000553340 ZBTB38Q8NAP3 1195 aaPredicted RBP20.05■□□□□ 0.8
SYNE3-202ENST00000553340 ZCRB1Q8TBF4 217 aaKnown RBP20.05■□□□□ 0.8
SYNE3-202ENST00000553340 DDX17Q92841 729 aaKnown RBP20.05■□□□□ 0.8
SYNE3-202ENST00000553340 DESI2Q9BSY9 194 aa20.05■□□□□ 0.8
SYNE3-202ENST00000553340 ZNF330Q9Y3S2 320 aaPredicted RBP20.05■□□□□ 0.8
SYNE3-202ENST00000553340 IRX5P78411 483 aaPredicted RBP20.04■□□□□ 0.8
SYNE3-202ENST00000553340 ZNF827Q17R98 1081 aa20.04■□□□□ 0.8
SYNE3-202ENST00000553340 ZNF579Q8NAF0 562 aaKnown RBP20.04■□□□□ 0.8
SYNE3-202ENST00000553340 AIDAQ96BJ3 306 aa20.04■□□□□ 0.8
SYNE3-202ENST00000553340 AKR1B15C9JRZ8 316 aaPredicted RBP20.04■□□□□ 0.8
SYNE3-202ENST00000553340 PDE6AP16499 860 aa20.04■□□□□ 0.8
SYNE3-202ENST00000553340 ERCC5P28715 1186 aaPredicted RBP20.04■□□□□ 0.8
SYNE3-202ENST00000553340 GRIN1Q05586 938 aa20.04■□□□□ 0.8
SYNE3-202ENST00000553340 KARSQ15046 597 aaKnown RBP20.04■□□□□ 0.8
SYNE3-202ENST00000553340 TRIM22Q8IYM9 498 aa20.04■□□□□ 0.8
SYNE3-202ENST00000553340 SAMSN1Q9NSI8 373 aaKnown RBP20.04■□□□□ 0.8
SYNE3-202ENST00000553340 TXLNAP40222 546 aa20.03■□□□□ 0.8
SYNE3-202ENST00000553340 PLCD1P51178 756 aa20.03■□□□□ 0.8
SYNE3-202ENST00000553340 ALX1Q15699 326 aa20.03■□□□□ 0.8
SYNE3-202ENST00000553340 CCDC34Q96HJ3 373 aa20.03■□□□□ 0.8
SYNE3-202ENST00000553340 PANX2Q96RD6 677 aa20.03■□□□□ 0.8
SYNE3-202ENST00000553340 STRBPQ96SI9 672 aaKnown RBP20.03■□□□□ 0.8
SYNE3-202ENST00000553340 FOXP1Q9H334 677 aaPredicted RBP20.03■□□□□ 0.8
SYNE3-202ENST00000553340 ZSWIM5Q9P217 1185 aa20.03■□□□□ 0.8
SYNE3-202ENST00000553340 FUT8Q9BYC5 575 aa20.03■□□□□ 0.8
SYNE3-202ENST00000553340 ZCCHC17Q9NP64 241 aaKnown RBP20.03■□□□□ 0.8
SYNE3-202ENST00000553340 A0A1B0GTH6 734 aa20.02■□□□□ 0.8
SYNE3-202ENST00000553340 CCDC151A5D8V7 595 aa20.02■□□□□ 0.8
SYNE3-202ENST00000553340 ZBTB22O15209 634 aa20.02■□□□□ 0.8
SYNE3-202ENST00000553340 NEK11Q8NG66 645 aa20.02■□□□□ 0.8
SYNE3-202ENST00000553340 MRPL44Q9H9J2 332 aaKnown RBP20.02■□□□□ 0.8
SYNE3-202ENST00000553340 INCENPQ9NQS7 918 aa20.02■□□□□ 0.8
SYNE3-202ENST00000553340 CNNM1Q9NRU3 951 aa20.02■□□□□ 0.8
SYNE3-202ENST00000553340 KCNJ14Q9UNX9 436 aa20.02■□□□□ 0.8
SYNE3-202ENST00000553340 GUCY1A2P33402 732 aa20.02■□□□□ 0.79
SYNE3-202ENST00000553340 KIF6Q6ZMV9 814 aa20.02■□□□□ 0.79
SYNE3-202ENST00000553340 MED15Q96RN5 788 aa20.02■□□□□ 0.79
SYNE3-202ENST00000553340 CNNM2Q9H8M5 875 aa20.02■□□□□ 0.79
SYNE3-202ENST00000553340 TMEM51Q9NW97 253 aa20.02■□□□□ 0.79
SYNE3-202ENST00000553340 CEP131Q9UPN4 1083 aa20.02■□□□□ 0.79
SYNE3-202ENST00000553340 TULP2O00295 520 aa20.01■□□□□ 0.79
SYNE3-202ENST00000553340 ITGA6P23229 1130 aa20.01■□□□□ 0.79
SYNE3-202ENST00000553340 ST5P78524 1137 aa20.01■□□□□ 0.79
SYNE3-202ENST00000553340 BRD3Q15059 726 aa20.01■□□□□ 0.79
SYNE3-202ENST00000553340 GRAMD1CQ8IYS0 662 aa20.01■□□□□ 0.79
SYNE3-202ENST00000553340 NAA15Q9BXJ9 866 aaKnown RBP20.01■□□□□ 0.79
SYNE3-202ENST00000553340 NAPBQ9H115 298 aa20.01■□□□□ 0.79
SYNE3-202ENST00000553340 WWC3Q9ULE0 1092 aa20.01■□□□□ 0.79
SYNE3-202ENST00000553340 SRPRBQ9Y5M8 271 aaKnown RBP20.01■□□□□ 0.79
SYNE3-202ENST00000553340 PATL2C9JE40 543 aaKnown RBP20.01■□□□□ 0.79
SYNE3-202ENST00000553340 MTF1Q14872 753 aa20.01■□□□□ 0.79
SYNE3-202ENST00000553340 PPFIBP1Q86W92 1011 aa20.01■□□□□ 0.79
SYNE3-202ENST00000553340 TCRBV5S4A2TA0A5A2 114 aa20■□□□□ 0.79
SYNE3-202ENST00000553340 ACTN4O43707 911 aaKnown RBP20■□□□□ 0.79
SYNE3-202ENST00000553340 ATF3P18847 181 aa20■□□□□ 0.79
SYNE3-202ENST00000553340 CT47A1Q5JQC4 288 aaPredicted RBP20■□□□□ 0.79
SYNE3-202ENST00000553340 IFNL3Q8IZI9 196 aa20■□□□□ 0.79
SYNE3-202ENST00000553340 SPATA20Q8TB22 786 aa20■□□□□ 0.79
SYNE3-202ENST00000553340 KRT23Q9C075 422 aa20■□□□□ 0.79
SYNE3-202ENST00000553340 PCDHB6Q9Y5E3 794 aa20■□□□□ 0.79
SYNE3-202ENST00000553340 NID2Q14112 1375 aa20■□□□□ 0.79
SYNE3-202ENST00000553340 ANKRD18BA2A2Z9 1011 aa20■□□□□ 0.79
SYNE3-202ENST00000553340 SOWAHDA6NJG2 315 aa20■□□□□ 0.79
SYNE3-202ENST00000553340 CHMP4BP1P59074 171 aa20■□□□□ 0.79
SYNE3-202ENST00000553340 RTN1Q16799 776 aa20■□□□□ 0.79
SYNE3-202ENST00000553340 LONRF2Q1L5Z9 754 aa20■□□□□ 0.79
SYNE3-202ENST00000553340 SRGAP1Q7Z6B7 1085 aa20■□□□□ 0.79
SYNE3-202ENST00000553340 TEX13AQ9BXU3 409 aaPredicted RBP20■□□□□ 0.79
SYNE3-202ENST00000553340 GREM2Q9H772 168 aa20■□□□□ 0.79
SYNE3-202ENST00000553340 LZTFL1Q9NQ48 299 aa20■□□□□ 0.79
SYNE3-202ENST00000553340 KIF5CO60282 957 aa19.99■□□□□ 0.79
SYNE3-202ENST00000553340 UQCRFS1P1P0C7P4 283 aa19.99■□□□□ 0.79
SYNE3-202ENST00000553340 CTDSPL2Q05D32 466 aa19.99■□□□□ 0.79
SYNE3-202ENST00000553340 TTLL11Q8NHH1 800 aa19.99■□□□□ 0.79
SYNE3-202ENST00000553340 IRX2Q9BZI1 471 aaPredicted RBP19.99■□□□□ 0.79
SYNE3-202ENST00000553340 ADGRG1Q9Y653 693 aa19.99■□□□□ 0.79
SYNE3-202ENST00000553340 DEXIO95424 95 aa19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms