RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 SAMM50Q9Y512 469 aa17.04■□□□□ 0.32
CUX1-214ENST00000550008 FANCCQ00597 558 aa17.04■□□□□ 0.32
CUX1-214ENST00000550008 ADALQ6DHV7 355 aa17.04■□□□□ 0.32
CUX1-214ENST00000550008 WDR66Q8TBY9 1149 aa17.04■□□□□ 0.32
CUX1-214ENST00000550008 LUC7LQ9NQ29 371 aaKnown RBP17.04■□□□□ 0.32
CUX1-214ENST00000550008 NFE2L3Q9Y4A8 694 aa17.04■□□□□ 0.32
CUX1-214ENST00000550008 PARP3Q9Y6F1 533 aa17.04■□□□□ 0.32
CUX1-214ENST00000550008 MROH1Q8NDA8 1641 aa17.04■□□□□ 0.32
CUX1-214ENST00000550008 MYO1BO43795 1136 aa17.03■□□□□ 0.32
CUX1-214ENST00000550008 BLZF1Q9H2G9 400 aa17.03■□□□□ 0.32
CUX1-214ENST00000550008 PSMA7O14818 248 aa17.03■□□□□ 0.32
CUX1-214ENST00000550008 WDR78Q5VTH9 848 aa17.03■□□□□ 0.32
CUX1-214ENST00000550008 FAM196AQ6ZSG2 479 aa17.03■□□□□ 0.32
CUX1-214ENST00000550008 EEF2KMTQ96G04 330 aa17.03■□□□□ 0.32
CUX1-214ENST00000550008 TTC14Q96N46 770 aa17.03■□□□□ 0.32
CUX1-214ENST00000550008 SERTAD1Q9UHV2 236 aa17.03■□□□□ 0.32
CUX1-214ENST00000550008 PLCG2P16885 1265 aa17.03■□□□□ 0.32
CUX1-214ENST00000550008 ZSWIM5Q9P217 1185 aa17.03■□□□□ 0.32
CUX1-214ENST00000550008 NRBP1Q9UHY1 535 aa17.03■□□□□ 0.32
CUX1-214ENST00000550008 FBXO3Q9UK99 471 aa17.03■□□□□ 0.32
CUX1-214ENST00000550008 MATR3P43243 847 aaKnown RBP eCLIP17.03■□□□□ 0.325e-7■■■■□ 22.9
CUX1-214ENST00000550008 PPP1R9BQ96SB3 815 aa17.03■□□□□ 0.32
CUX1-214ENST00000550008 RBM28Q9NW13 759 aaKnown RBP17.03■□□□□ 0.32
CUX1-214ENST00000550008 CYP2E1P05181 493 aaPredicted RBP17.02■□□□□ 0.32
CUX1-214ENST00000550008 ARID5AQ03989 594 aa17.02■□□□□ 0.32
CUX1-214ENST00000550008 RBM17Q96I25 401 aaKnown RBP17.02■□□□□ 0.32
CUX1-214ENST00000550008 KIAA1468Q9P260 1216 aa17.02■□□□□ 0.32
CUX1-214ENST00000550008 AGLP35573 1532 aa17.02■□□□□ 0.32
CUX1-214ENST00000550008 CUTAO60888 179 aa17.02■□□□□ 0.32
CUX1-214ENST00000550008 FOXO4P98177 505 aa17.02■□□□□ 0.32
CUX1-214ENST00000550008 GPKOWQ92917 476 aaPredicted RBP eCLIP17.02■□□□□ 0.327e-6■□□□□ 10
CUX1-214ENST00000550008 CARMIL3Q8ND23 1372 aa17.02■□□□□ 0.31
CUX1-214ENST00000550008 AKR1B10O60218 316 aa17.02■□□□□ 0.31
CUX1-214ENST00000550008 CHMP4BP1P59074 171 aa17.02■□□□□ 0.31
CUX1-214ENST00000550008 ZYXQ15942 572 aaKnown RBP17.02■□□□□ 0.31
CUX1-214ENST00000550008 NOSTRINQ8IVI9 506 aa17.02■□□□□ 0.31
CUX1-214ENST00000550008 OGFOD1Q8N543 542 aa17.02■□□□□ 0.31
CUX1-214ENST00000550008 XPO4Q9C0E2 1151 aaKnown RBP17.02■□□□□ 0.31
CUX1-214ENST00000550008 TMEM131LA2VDJ0 1609 aa17.01■□□□□ 0.31
CUX1-214ENST00000550008 TXKP42681 527 aa17.01■□□□□ 0.31
CUX1-214ENST00000550008 PDIA6Q15084 440 aa17.01■□□□□ 0.31
CUX1-214ENST00000550008 MAP2P11137 1827 aaKnown RBP17.01■□□□□ 0.31
CUX1-214ENST00000550008 NCAPD2Q15021 1401 aa17.01■□□□□ 0.31
CUX1-214ENST00000550008 SCNN1DP51172 638 aa17.01■□□□□ 0.31
CUX1-214ENST00000550008 NR5A1Q13285 461 aa17.01■□□□□ 0.31
CUX1-214ENST00000550008 RMND1Q9NWS8 449 aa17.01■□□□□ 0.31
CUX1-214ENST00000550008 COL3A1P02461 1466 aaPredicted RBP17.01■□□□□ 0.31
CUX1-214ENST00000550008 ZMYM6O95789 1325 aa17.01■□□□□ 0.31
CUX1-214ENST00000550008 ERLIN1O75477 346 aa17■□□□□ 0.31
CUX1-214ENST00000550008 DOK7Q18PE1 504 aa17■□□□□ 0.31
CUX1-214ENST00000550008 ZSCAN10Q96SZ4 725 aaPredicted RBP17■□□□□ 0.31
CUX1-214ENST00000550008 CTNND2Q9UQB3 1225 aa17■□□□□ 0.31
CUX1-214ENST00000550008 PPLO60437 1756 aa17■□□□□ 0.31
CUX1-214ENST00000550008 IGSF3O75054 1194 aa17■□□□□ 0.31
CUX1-214ENST00000550008 GNA11P29992 359 aa17■□□□□ 0.31
CUX1-214ENST00000550008 PAXBP1Q9Y5B6 917 aa17■□□□□ 0.31
CUX1-214ENST00000550008 MRVI1Q9Y6F6 885 aa17■□□□□ 0.31
CUX1-214ENST00000550008 DEPDC5O75140 1603 aa17■□□□□ 0.31
CUX1-214ENST00000550008 COBLO75128 1261 aa17■□□□□ 0.31
CUX1-214ENST00000550008 UBXN1Q04323 297 aa17■□□□□ 0.31
CUX1-214ENST00000550008 DIXDC1Q155Q3 683 aa17■□□□□ 0.31
CUX1-214ENST00000550008 ATG9AQ7Z3C6 839 aa17■□□□□ 0.31
CUX1-214ENST00000550008 ARID4AP29374 1257 aaPredicted RBP16.99■□□□□ 0.31
CUX1-214ENST00000550008 USP8P40818 1118 aa16.99■□□□□ 0.31
CUX1-214ENST00000550008 RAD51AP2Q09MP3 1159 aa16.99■□□□□ 0.31
CUX1-214ENST00000550008 KRT79Q5XKE5 535 aa16.99■□□□□ 0.31
CUX1-214ENST00000550008 TNS3Q68CZ2 1445 aa16.99■□□□□ 0.31
CUX1-214ENST00000550008 DPP8Q6V1X1 898 aaPredicted RBP16.99■□□□□ 0.31
CUX1-214ENST00000550008 FCHSD1Q86WN1 690 aa16.99■□□□□ 0.31
CUX1-214ENST00000550008 ZNF804BA4D1E1 1349 aa16.99■□□□□ 0.31
CUX1-214ENST00000550008 DIP2AQ14689 1571 aa16.99■□□□□ 0.31
CUX1-214ENST00000550008 CCNT1O60563 726 aaKnown RBP16.99■□□□□ 0.31
CUX1-214ENST00000550008 POSTNQ15063 836 aa16.99■□□□□ 0.31
CUX1-214ENST00000550008 PYM1Q9BRP8 204 aaKnown RBP16.99■□□□□ 0.31
CUX1-214ENST00000550008 CYP19A1P11511 503 aaPredicted RBP16.99■□□□□ 0.31
CUX1-214ENST00000550008 STOX1Q6ZVD7 989 aa16.99■□□□□ 0.31
CUX1-214ENST00000550008 KAZALD1Q96I82 304 aa16.99■□□□□ 0.31
CUX1-214ENST00000550008 A0A0G2JLW4 131 aa16.98■□□□□ 0.31
CUX1-214ENST00000550008 NLRP12P59046 1061 aa16.98■□□□□ 0.31
CUX1-214ENST00000550008 TAF3Q5VWG9 929 aa16.98■□□□□ 0.31
CUX1-214ENST00000550008 JADE2Q9NQC1 790 aa16.98■□□□□ 0.31
CUX1-214ENST00000550008 PKD2L1Q9P0L9 805 aa16.98■□□□□ 0.31
CUX1-214ENST00000550008 TECPR2O15040 1411 aa16.98■□□□□ 0.31
CUX1-214ENST00000550008 RIOK3O14730 519 aaKnown RBP16.98■□□□□ 0.31
CUX1-214ENST00000550008 C11orf57Q6ZUT1 292 aaPredicted RBP16.98■□□□□ 0.31
CUX1-214ENST00000550008 PNMA1Q8ND90 353 aa16.98■□□□□ 0.31
CUX1-214ENST00000550008 SMARCC2Q8TAQ2 1214 aa16.98■□□□□ 0.31
CUX1-214ENST00000550008 RASGRP4Q8TDF6 673 aa16.98■□□□□ 0.31
CUX1-214ENST00000550008 RESTQ13127 1097 aa16.98■□□□□ 0.31
CUX1-214ENST00000550008 ISCA1Q9BUE6 129 aa16.98■□□□□ 0.31
CUX1-214ENST00000550008 PALLDQ8WX93 1383 aa16.98■□□□□ 0.31
CUX1-214ENST00000550008 PPP1R12BO60237 982 aaPredicted RBP16.98■□□□□ 0.31
CUX1-214ENST00000550008 UBE4AQ14139 1066 aa16.98■□□□□ 0.31
CUX1-214ENST00000550008 TBC1D10CQ8IV04 446 aa16.98■□□□□ 0.31
CUX1-214ENST00000550008 CEMIPQ8WUJ3 1361 aa16.97■□□□□ 0.31
CUX1-214ENST00000550008 DPCR1Q3MIW9 517 aa16.97■□□□□ 0.31
CUX1-214ENST00000550008 PYCARDQ9ULZ3 195 aa16.97■□□□□ 0.31
CUX1-214ENST00000550008 TTF2Q9UNY4 1162 aaKnown RBP16.97■□□□□ 0.31
CUX1-214ENST00000550008 FGFR1OPO95684 399 aaKnown RBP16.97■□□□□ 0.31
CUX1-214ENST00000550008 LONRF3Q496Y0 759 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms