RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 MCM10Q7L590 875 aa6.42□□□□□ -1.38
LIMA1-203ENST00000547825 CCDC186Q7Z3E2 898 aa6.42□□□□□ -1.38
LIMA1-203ENST00000547825 USP48Q86UV5 1035 aa6.42□□□□□ -1.38
LIMA1-203ENST00000547825 ATCAYQ86WG3 371 aa6.42□□□□□ -1.38
LIMA1-203ENST00000547825 CNPY2Q9Y2B0 182 aa6.42□□□□□ -1.38
LIMA1-203ENST00000547825 LAMB1P07942 1786 aa6.41□□□□□ -1.38
LIMA1-203ENST00000547825 ZBTB39O15060 712 aa6.41□□□□□ -1.38
LIMA1-203ENST00000547825 HDLBPQ00341 1268 aaKnown RBP6.41□□□□□ -1.38
LIMA1-203ENST00000547825 PTPN14Q15678 1187 aa6.41□□□□□ -1.38
LIMA1-203ENST00000547825 FAM196AQ6ZSG2 479 aa6.41□□□□□ -1.38
LIMA1-203ENST00000547825 CCDC94Q9BW85 323 aaPredicted RBP6.41□□□□□ -1.38
LIMA1-203ENST00000547825 LRRCC1Q9C099 1032 aa6.41□□□□□ -1.38
LIMA1-203ENST00000547825 NOL7Q9UMY1 257 aaKnown RBP6.41□□□□□ -1.38
LIMA1-203ENST00000547825 ABCC4O15439 1325 aa6.41□□□□□ -1.38
LIMA1-203ENST00000547825 FER1L6Q2WGJ9 1857 aa6.41□□□□□ -1.38
LIMA1-203ENST00000547825 LETM1O95202 739 aaPredicted RBP6.41□□□□□ -1.38
LIMA1-203ENST00000547825 GNAI2P04899 355 aa6.41□□□□□ -1.38
LIMA1-203ENST00000547825 ME1P48163 572 aa6.41□□□□□ -1.38
LIMA1-203ENST00000547825 MRPL58Q14197 206 aaKnown RBP6.41□□□□□ -1.38
LIMA1-203ENST00000547825 CCDC183Q5T5S1 534 aa6.41□□□□□ -1.38
LIMA1-203ENST00000547825 SPATA32Q96LK8 384 aa6.41□□□□□ -1.38
LIMA1-203ENST00000547825 KCTD15Q96SI1 283 aaPredicted RBP6.41□□□□□ -1.38
LIMA1-203ENST00000547825 SIL1Q9H173 461 aa6.41□□□□□ -1.38
LIMA1-203ENST00000547825 CPLX1O14810 134 aa6.41□□□□□ -1.38
LIMA1-203ENST00000547825 ZNF853P0CG23 659 aa6.41□□□□□ -1.38
LIMA1-203ENST00000547825 IL2RBP14784 551 aa6.41□□□□□ -1.38
LIMA1-203ENST00000547825 MAP3K11Q16584 847 aa6.41□□□□□ -1.38
LIMA1-203ENST00000547825 MBIPQ9NS73 344 aa6.41□□□□□ -1.38
LIMA1-203ENST00000547825 LMBRD1Q9NUN5 540 aa6.41□□□□□ -1.38
LIMA1-203ENST00000547825 VAMP1P23763 118 aa6.4□□□□□ -1.38
LIMA1-203ENST00000547825 MAPK8P45983 427 aa6.4□□□□□ -1.38
LIMA1-203ENST00000547825 GUCY1B3Q02153 619 aa6.4□□□□□ -1.38
LIMA1-203ENST00000547825 INTS6LQ5JSJ4 861 aaKnown RBP6.4□□□□□ -1.38
LIMA1-203ENST00000547825 RASSF8Q8NHQ8 419 aa6.4□□□□□ -1.38
LIMA1-203ENST00000547825 FSD1Q9BTV5 496 aa6.4□□□□□ -1.38
LIMA1-203ENST00000547825 SLC6A16Q9GZN6 736 aa6.4□□□□□ -1.38
LIMA1-203ENST00000547825 ZSWIM4Q9H7M6 989 aa6.4□□□□□ -1.38
LIMA1-203ENST00000547825 TNRC6CQ9HCJ0 1690 aaKnown RBP6.4□□□□□ -1.38
LIMA1-203ENST00000547825 PSME4Q14997 1843 aa6.4□□□□□ -1.38
LIMA1-203ENST00000547825 POTEMA6NI47 508 aa6.4□□□□□ -1.39
LIMA1-203ENST00000547825 ISM2Q6H9L7 571 aa6.4□□□□□ -1.39
LIMA1-203ENST00000547825 CLEC17AQ6ZS10 378 aa6.4□□□□□ -1.39
LIMA1-203ENST00000547825 ZSCAN29Q8IWY8 852 aaPredicted RBP6.4□□□□□ -1.39
LIMA1-203ENST00000547825 CLASRPQ8N2M8 674 aaKnown RBP6.4□□□□□ -1.39
LIMA1-203ENST00000547825 NECAB1Q8N987 351 aa6.4□□□□□ -1.39
LIMA1-203ENST00000547825 UBXN4Q92575 508 aa6.4□□□□□ -1.39
LIMA1-203ENST00000547825 TMEM63CQ9P1W3 806 aa6.4□□□□□ -1.39
LIMA1-203ENST00000547825 CYP46A1Q9Y6A2 500 aa6.4□□□□□ -1.39
LIMA1-203ENST00000547825 IGHA2P01877 340 aa6.4□□□□□ -1.39
LIMA1-203ENST00000547825 PTGS1P23219 599 aa6.4□□□□□ -1.39
LIMA1-203ENST00000547825 SF3B2Q13435 895 aaKnown RBP6.4□□□□□ -1.39
LIMA1-203ENST00000547825 HSP90B2PQ58FF3 399 aa6.4□□□□□ -1.39
LIMA1-203ENST00000547825 RNF20Q5VTR2 975 aa6.4□□□□□ -1.39
LIMA1-203ENST00000547825 CNTROBQ8N137 903 aa6.4□□□□□ -1.39
LIMA1-203ENST00000547825 SREK1Q8WXA9 508 aaKnown RBP6.4□□□□□ -1.39
LIMA1-203ENST00000547825 SYTL4Q96C24 671 aaPredicted RBP6.4□□□□□ -1.39
LIMA1-203ENST00000547825 PPP1R9BQ96SB3 815 aa6.4□□□□□ -1.39
LIMA1-203ENST00000547825 C1QTNF2Q9BXJ5 285 aa6.4□□□□□ -1.39
LIMA1-203ENST00000547825 CYLDQ9NQC7 956 aa6.4□□□□□ -1.39
LIMA1-203ENST00000547825 CLIP2Q9UDT6 1046 aa6.4□□□□□ -1.39
LIMA1-203ENST00000547825 USP3Q9Y6I4 520 aa6.4□□□□□ -1.39
LIMA1-203ENST00000547825 UTRNP46939 3433 aa6.39□□□□□ -1.39
LIMA1-203ENST00000547825 URI1O94763 535 aaPredicted RBP6.39□□□□□ -1.39
LIMA1-203ENST00000547825 APPP05067 770 aa6.39□□□□□ -1.39
LIMA1-203ENST00000547825 ERCC5P28715 1186 aaPredicted RBP6.39□□□□□ -1.39
LIMA1-203ENST00000547825 MCM5P33992 734 aa6.39□□□□□ -1.39
LIMA1-203ENST00000547825 G3BP1Q13283 466 aaKnown RBP eCLIP6.39□□□□□ -1.39
LIMA1-203ENST00000547825 PRPF40BQ6NWY9 871 aaKnown RBP6.39□□□□□ -1.39
LIMA1-203ENST00000547825 NEUROD6Q96NK8 337 aa6.39□□□□□ -1.39
LIMA1-203ENST00000547825 OSBPL3Q9H4L5 887 aa6.39□□□□□ -1.39
LIMA1-203ENST00000547825 RAB6BQ9NRW1 208 aa6.39□□□□□ -1.39
LIMA1-203ENST00000547825 PDRG1Q9NUG6 133 aa6.39□□□□□ -1.39
LIMA1-203ENST00000547825 PRDM4Q9UKN5 801 aa6.39□□□□□ -1.39
LIMA1-203ENST00000547825 BIN1O00499 593 aa6.39□□□□□ -1.39
LIMA1-203ENST00000547825 GPR182O15218 404 aa6.39□□□□□ -1.39
LIMA1-203ENST00000547825 SRGAP3O43295 1099 aa6.39□□□□□ -1.39
LIMA1-203ENST00000547825 CPA1P15085 419 aa6.39□□□□□ -1.39
LIMA1-203ENST00000547825 EPHA4P54764 986 aa6.39□□□□□ -1.39
LIMA1-203ENST00000547825 TEFQ10587 303 aa6.39□□□□□ -1.39
LIMA1-203ENST00000547825 FAM173BQ6P4H8 233 aa6.39□□□□□ -1.39
LIMA1-203ENST00000547825 SYNE3Q6ZMZ3 975 aa6.39□□□□□ -1.39
LIMA1-203ENST00000547825 DRC1Q96MC2 740 aa6.39□□□□□ -1.39
LIMA1-203ENST00000547825 LRFN2Q9ULH4 789 aa6.39□□□□□ -1.39
LIMA1-203ENST00000547825 SRCAPQ6ZRS2 3230 aa6.39□□□□□ -1.39
LIMA1-203ENST00000547825 GADD45BO75293 160 aaPredicted RBP6.39□□□□□ -1.39
LIMA1-203ENST00000547825 SERPINC1P01008 464 aa6.39□□□□□ -1.39
LIMA1-203ENST00000547825 ZNF165P49910 485 aa6.39□□□□□ -1.39
LIMA1-203ENST00000547825 THSD4Q6ZMP0 1018 aa6.39□□□□□ -1.39
LIMA1-203ENST00000547825 KCTD12Q96CX2 325 aaKnown RBP6.39□□□□□ -1.39
LIMA1-203ENST00000547825 DNAJC2Q99543 621 aaKnown RBP6.39□□□□□ -1.39
LIMA1-203ENST00000547825 MEIS3Q99687 375 aa6.39□□□□□ -1.39
LIMA1-203ENST00000547825 LRRC4BQ9NT99 713 aa6.39□□□□□ -1.39
LIMA1-203ENST00000547825 CACNA1SQ13698 1873 aa6.38□□□□□ -1.39
LIMA1-203ENST00000547825 CT47B1P0C2W7 299 aaPredicted RBP6.38□□□□□ -1.39
LIMA1-203ENST00000547825 MX1P20591 662 aa6.38□□□□□ -1.39
LIMA1-203ENST00000547825 EIF1AXP47813 144 aaKnown RBP6.38□□□□□ -1.39
LIMA1-203ENST00000547825 DNM1Q05193 864 aaKnown RBP6.38□□□□□ -1.39
LIMA1-203ENST00000547825 RAD51AP2Q09MP3 1159 aa6.38□□□□□ -1.39
LIMA1-203ENST00000547825 SH3PXD2AQ5TCZ1 1133 aa6.38□□□□□ -1.39
LIMA1-203ENST00000547825 ETNK1Q9HBU6 452 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms