RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 KINO60870 393 aaKnown RBP12.87□□□□□ -0.35
CUX1-212ENST00000547394 VEGFAP15692 232 aaPredicted RBP12.87□□□□□ -0.35
CUX1-212ENST00000547394 LIFRP42702 1097 aa12.87□□□□□ -0.35
CUX1-212ENST00000547394 NOM1Q5C9Z4 860 aaKnown RBP12.87□□□□□ -0.35
CUX1-212ENST00000547394 ANO1Q5XXA6 986 aa12.87□□□□□ -0.35
CUX1-212ENST00000547394 FANCBQ8NB91 859 aa12.87□□□□□ -0.35
CUX1-212ENST00000547394 ESR2Q92731 530 aa12.87□□□□□ -0.35
CUX1-212ENST00000547394 SDF4Q9BRK5 362 aa12.87□□□□□ -0.35
CUX1-212ENST00000547394 RTEL1Q9NZ71 1219 aa12.87□□□□□ -0.35
CUX1-212ENST00000547394 VPS54Q9P1Q0 977 aa12.87□□□□□ -0.35
CUX1-212ENST00000547394 THSD7AQ9UPZ6 1657 aa12.86□□□□□ -0.35
CUX1-212ENST00000547394 CACNA1SQ13698 1873 aa12.86□□□□□ -0.35
CUX1-212ENST00000547394 DOCK2Q92608 1830 aa12.86□□□□□ -0.35
CUX1-212ENST00000547394 WDR19Q8NEZ3 1342 aa12.86□□□□□ -0.35
CUX1-212ENST00000547394 F8W031 263 aaPredicted RBP12.86□□□□□ -0.35
CUX1-212ENST00000547394 ZNF165P49910 485 aa12.86□□□□□ -0.35
CUX1-212ENST00000547394 GRIN1Q05586 938 aa12.86□□□□□ -0.35
CUX1-212ENST00000547394 MYH2Q9UKX2 1941 aa12.86□□□□□ -0.35
CUX1-212ENST00000547394 TRIM29Q14134 588 aa12.86□□□□□ -0.35
CUX1-212ENST00000547394 IFIT1BQ5T764 474 aaKnown RBP12.86□□□□□ -0.35
CUX1-212ENST00000547394 MAPKAPK5Q8IW41 473 aa12.86□□□□□ -0.35
CUX1-212ENST00000547394 ENGASEQ8NFI3 743 aa12.86□□□□□ -0.35
CUX1-212ENST00000547394 FAM200AQ8TCP9 573 aa12.86□□□□□ -0.35
CUX1-212ENST00000547394 ZSCAN10Q96SZ4 725 aaPredicted RBP12.86□□□□□ -0.35
CUX1-212ENST00000547394 MXD3Q9BW11 206 aa12.86□□□□□ -0.35
CUX1-212ENST00000547394 ZNF219Q9P2Y4 722 aaPredicted RBP12.86□□□□□ -0.35
CUX1-212ENST00000547394 C4BP0C0L5 1744 aa12.86□□□□□ -0.35
CUX1-212ENST00000547394 C6orf229H3BNL8 230 aa12.85□□□□□ -0.35
CUX1-212ENST00000547394 CDKL5O76039 1030 aa12.85□□□□□ -0.35
CUX1-212ENST00000547394 SEC23AQ15436 765 aa12.85□□□□□ -0.35
CUX1-212ENST00000547394 DIS3L2Q8IYB7 885 aaKnown RBP12.85□□□□□ -0.35
CUX1-212ENST00000547394 TGFBRAP1Q8WUH2 860 aa12.85□□□□□ -0.35
CUX1-212ENST00000547394 MRPS27Q92552 414 aaKnown RBP12.85□□□□□ -0.35
CUX1-212ENST00000547394 RNF41Q9H4P4 317 aaPredicted RBP12.85□□□□□ -0.35
CUX1-212ENST00000547394 NHSQ6T4R5 1651 aa12.85□□□□□ -0.35
CUX1-212ENST00000547394 LDHBP07195 334 aaKnown RBP12.85□□□□□ -0.35
CUX1-212ENST00000547394 FAM160A1Q05DH4 1040 aa12.85□□□□□ -0.35
CUX1-212ENST00000547394 TXNRD1Q16881 649 aa12.85□□□□□ -0.35
CUX1-212ENST00000547394 ZNF827Q17R98 1081 aa12.85□□□□□ -0.35
CUX1-212ENST00000547394 V9GY48 417 aaPredicted RBP12.85□□□□□ -0.35
CUX1-212ENST00000547394 ADAMTS3O15072 1205 aa12.84□□□□□ -0.35
CUX1-212ENST00000547394 ONECUT3O60422 494 aaPredicted RBP12.84□□□□□ -0.35
CUX1-212ENST00000547394 FMNL1O95466 1100 aaPredicted RBP12.84□□□□□ -0.35
CUX1-212ENST00000547394 USP5P45974 858 aa12.84□□□□□ -0.35
CUX1-212ENST00000547394 NBPF11Q86T75 865 aa12.84□□□□□ -0.35
CUX1-212ENST00000547394 CRACR2BQ8N4Y2 399 aaPredicted RBP12.84□□□□□ -0.35
CUX1-212ENST00000547394 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.84□□□□□ -0.35
CUX1-212ENST00000547394 CRNKL1Q9BZJ0 848 aaKnown RBP12.84□□□□□ -0.35
CUX1-212ENST00000547394 POLLQ9UGP5 575 aa12.84□□□□□ -0.35
CUX1-212ENST00000547394 NOL7Q9UMY1 257 aaKnown RBP12.84□□□□□ -0.35
CUX1-212ENST00000547394 IRS2Q9Y4H2 1338 aa12.84□□□□□ -0.35
CUX1-212ENST00000547394 EARS2Q5JPH6 523 aaKnown RBP12.84□□□□□ -0.35
CUX1-212ENST00000547394 AEBP2Q6ZN18 517 aaPredicted RBP12.84□□□□□ -0.35
CUX1-212ENST00000547394 FMR1NBQ8N0W7 255 aaPredicted RBP12.84□□□□□ -0.35
CUX1-212ENST00000547394 NRBP1Q9UHY1 535 aa12.84□□□□□ -0.35
CUX1-212ENST00000547394 ZKSCAN5Q9Y2L8 839 aa12.84□□□□□ -0.35
CUX1-212ENST00000547394 USP17L3A6NCW0 530 aa12.83□□□□□ -0.35
CUX1-212ENST00000547394 USP17L4A6NCW7 530 aa12.83□□□□□ -0.35
CUX1-212ENST00000547394 SLURP2P0DP57 97 aa12.83□□□□□ -0.35
CUX1-212ENST00000547394 PFKFB1P16118 471 aa12.83□□□□□ -0.35
CUX1-212ENST00000547394 IFNAR1P17181 557 aa12.83□□□□□ -0.35
CUX1-212ENST00000547394 AXDND1Q5T1B0 1012 aaPredicted RBP12.83□□□□□ -0.35
CUX1-212ENST00000547394 USP17L1Q7RTZ2 530 aa12.83□□□□□ -0.35
CUX1-212ENST00000547394 CPVLQ9H3G5 476 aa12.83□□□□□ -0.35
CUX1-212ENST00000547394 CCDC39Q9UFE4 941 aa12.83□□□□□ -0.35
CUX1-212ENST00000547394 XDHP47989 1333 aa12.83□□□□□ -0.36
CUX1-212ENST00000547394 TSPY2A6NKD2 308 aa12.83□□□□□ -0.36
CUX1-212ENST00000547394 PLCD1P51178 756 aa12.83□□□□□ -0.36
CUX1-212ENST00000547394 ST5P78524 1137 aa12.83□□□□□ -0.36
CUX1-212ENST00000547394 ADALQ6DHV7 355 aa12.83□□□□□ -0.36
CUX1-212ENST00000547394 BRAPQ7Z569 592 aa12.83□□□□□ -0.36
CUX1-212ENST00000547394 TRIM22Q8IYM9 498 aa12.83□□□□□ -0.36
CUX1-212ENST00000547394 BRIP1Q9BX63 1249 aa12.83□□□□□ -0.36
CUX1-212ENST00000547394 POLR3EQ9NVU0 708 aa12.83□□□□□ -0.36
CUX1-212ENST00000547394 CHD4Q14839 1912 aa12.83□□□□□ -0.36
CUX1-212ENST00000547394 WNT7AO00755 349 aa12.83□□□□□ -0.36
CUX1-212ENST00000547394 TOB1P50616 345 aaPredicted RBP12.83□□□□□ -0.36
CUX1-212ENST00000547394 CABP5Q9NP86 173 aa12.83□□□□□ -0.36
CUX1-212ENST00000547394 PCDHB6Q9Y5E3 794 aa12.83□□□□□ -0.36
CUX1-212ENST00000547394 TAF1LQ8IZX4 1826 aa12.82□□□□□ -0.36
CUX1-212ENST00000547394 A0A1B0GUL6 1792 aa12.82□□□□□ -0.36
CUX1-212ENST00000547394 UVSSAQ2YD98 709 aa12.82□□□□□ -0.36
CUX1-212ENST00000547394 SHC4Q6S5L8 630 aa12.82□□□□□ -0.36
CUX1-212ENST00000547394 RBM43Q6ZSC3 357 aaKnown RBP12.82□□□□□ -0.36
CUX1-212ENST00000547394 IQCA1Q86XH1 822 aa12.82□□□□□ -0.36
CUX1-212ENST00000547394 DRC7Q8IY82 874 aa12.82□□□□□ -0.36
CUX1-212ENST00000547394 TRIM5Q9C035 493 aa12.82□□□□□ -0.36
CUX1-212ENST00000547394 POLRMTO00411 1230 aaKnown RBP12.82□□□□□ -0.36
CUX1-212ENST00000547394 FOXN1O15353 648 aa12.82□□□□□ -0.36
CUX1-212ENST00000547394 ZNF202O95125 648 aa12.82□□□□□ -0.36
CUX1-212ENST00000547394 DOK7Q18PE1 504 aa12.82□□□□□ -0.36
CUX1-212ENST00000547394 DPCR1Q3MIW9 517 aa12.82□□□□□ -0.36
CUX1-212ENST00000547394 PDILTQ8N807 584 aa12.82□□□□□ -0.36
CUX1-212ENST00000547394 KCNG4Q8TDN1 519 aa12.82□□□□□ -0.36
CUX1-212ENST00000547394 CD209Q9NNX6 404 aa12.82□□□□□ -0.36
CUX1-212ENST00000547394 SBF2Q86WG5 1849 aa12.81□□□□□ -0.36
CUX1-212ENST00000547394 APBA3O96018 575 aa12.81□□□□□ -0.36
CUX1-212ENST00000547394 MMP1P03956 469 aa12.81□□□□□ -0.36
CUX1-212ENST00000547394 TFAP4Q01664 338 aa12.81□□□□□ -0.36
CUX1-212ENST00000547394 SLC39A14Q15043 492 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms