RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 PPP4R3BQ5MIZ7 849 aa18.95■□□□□ 0.62
PRPF40A-212ENST00000545856 FBXL16Q8N461 479 aa18.95■□□□□ 0.62
PRPF40A-212ENST00000545856 ESR2Q92731 530 aa18.95■□□□□ 0.62
PRPF40A-212ENST00000545856 NEK1Q96PY6 1258 aa18.95■□□□□ 0.62
PRPF40A-212ENST00000545856 GGA3Q9NZ52 723 aa18.95■□□□□ 0.62
PRPF40A-212ENST00000545856 PALD1Q9ULE6 856 aa18.95■□□□□ 0.62
PRPF40A-212ENST00000545856 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.95■□□□□ 0.62
PRPF40A-212ENST00000545856 POTECB2RU33 542 aa18.94■□□□□ 0.62
PRPF40A-212ENST00000545856 MAP3K10Q02779 954 aa18.94■□□□□ 0.62
PRPF40A-212ENST00000545856 RASA3Q14644 834 aa18.94■□□□□ 0.62
PRPF40A-212ENST00000545856 CCDC178Q5BJE1 867 aa18.94■□□□□ 0.62
PRPF40A-212ENST00000545856 ANGEL2Q5VTE6 544 aaKnown RBP18.94■□□□□ 0.62
PRPF40A-212ENST00000545856 CSRNP1Q96S65 589 aa18.94■□□□□ 0.62
PRPF40A-212ENST00000545856 DEFB129Q9H1M3 183 aa18.94■□□□□ 0.62
PRPF40A-212ENST00000545856 ALDH8A1Q9H2A2 487 aaPredicted RBP18.94■□□□□ 0.62
PRPF40A-212ENST00000545856 ZSWIM6Q9HCJ5 1215 aa18.94■□□□□ 0.62
PRPF40A-212ENST00000545856 GINM1Q9NU53 330 aa18.94■□□□□ 0.62
PRPF40A-212ENST00000545856 PLIN4Q96Q06 1357 aa18.94■□□□□ 0.62
PRPF40A-212ENST00000545856 GREB1LQ9C091 1923 aaPredicted RBP18.94■□□□□ 0.62
PRPF40A-212ENST00000545856 TCP10L2B9ZVM9 353 aa18.93■□□□□ 0.62
PRPF40A-212ENST00000545856 MCM5P33992 734 aa18.93■□□□□ 0.62
PRPF40A-212ENST00000545856 CACNB3P54284 484 aa18.93■□□□□ 0.62
PRPF40A-212ENST00000545856 HAND2P61296 217 aa18.93■□□□□ 0.62
PRPF40A-212ENST00000545856 BLOC1S2Q6QNY1 142 aa18.93■□□□□ 0.62
PRPF40A-212ENST00000545856 SULF1Q8IWU6 871 aa18.93■□□□□ 0.62
PRPF40A-212ENST00000545856 ZSCAN29Q8IWY8 852 aaPredicted RBP18.93■□□□□ 0.62
PRPF40A-212ENST00000545856 CCDC17Q96LX7 622 aa18.93■□□□□ 0.62
PRPF40A-212ENST00000545856 KIF2CQ99661 725 aa18.93■□□□□ 0.62
PRPF40A-212ENST00000545856 TRIM34Q9BYJ4 488 aa18.93■□□□□ 0.62
PRPF40A-212ENST00000545856 NBPF3Q9H094 633 aa18.93■□□□□ 0.62
PRPF40A-212ENST00000545856 CYP46A1Q9Y6A2 500 aa18.93■□□□□ 0.62
PRPF40A-212ENST00000545856 ST18O60284 1047 aa18.93■□□□□ 0.62
PRPF40A-212ENST00000545856 MCM2P49736 904 aa18.93■□□□□ 0.62
PRPF40A-212ENST00000545856 TCP10Q12799 353 aa18.93■□□□□ 0.62
PRPF40A-212ENST00000545856 SUPT20HL1Q3ZLR7 823 aa18.93■□□□□ 0.62
PRPF40A-212ENST00000545856 DCAF15Q66K64 600 aa18.93■□□□□ 0.62
PRPF40A-212ENST00000545856 DHX32Q7L7V1 743 aaKnown RBP18.93■□□□□ 0.62
PRPF40A-212ENST00000545856 TBC1D10CQ8IV04 446 aa18.93■□□□□ 0.62
PRPF40A-212ENST00000545856 CRACR2BQ8N4Y2 399 aaPredicted RBP18.93■□□□□ 0.62
PRPF40A-212ENST00000545856 JAKMIP1Q96N16 626 aaKnown RBP18.93■□□□□ 0.62
PRPF40A-212ENST00000545856 SAP30BPQ9UHR5 308 aaKnown RBP18.93■□□□□ 0.62
PRPF40A-212ENST00000545856 PLCD1P51178 756 aa18.92■□□□□ 0.62
PRPF40A-212ENST00000545856 SART3Q15020 963 aaKnown RBP18.92■□□□□ 0.62
PRPF40A-212ENST00000545856 ANKRD1Q15327 319 aa18.92■□□□□ 0.62
PRPF40A-212ENST00000545856 RUFY3Q7L099 469 aa18.92■□□□□ 0.62
PRPF40A-212ENST00000545856 SH3BP5LQ7L8J4 393 aa18.92■□□□□ 0.62
PRPF40A-212ENST00000545856 LDHDQ86WU2 507 aa18.92■□□□□ 0.62
PRPF40A-212ENST00000545856 MB21D2Q8IYB1 491 aaPredicted RBP18.92■□□□□ 0.62
PRPF40A-212ENST00000545856 TEPSINQ96N21 525 aa18.92■□□□□ 0.62
PRPF40A-212ENST00000545856 MKNK2Q9HBH9 465 aa18.92■□□□□ 0.62
PRPF40A-212ENST00000545856 DDTLA6NHG4 134 aaPredicted RBP18.91■□□□□ 0.62
PRPF40A-212ENST00000545856 CASTP20810 708 aaKnown RBP18.91■□□□□ 0.62
PRPF40A-212ENST00000545856 RPS6KB1P23443 525 aa18.91■□□□□ 0.62
PRPF40A-212ENST00000545856 CTDSPL2Q05D32 466 aa18.91■□□□□ 0.62
PRPF40A-212ENST00000545856 TATDN1Q6P1N9 297 aa18.91■□□□□ 0.62
PRPF40A-212ENST00000545856 STOX1Q6ZVD7 989 aa18.91■□□□□ 0.62
PRPF40A-212ENST00000545856 CDC37L1Q7L3B6 337 aa18.91■□□□□ 0.62
PRPF40A-212ENST00000545856 TMEM87BQ96K49 555 aa18.91■□□□□ 0.62
PRPF40A-212ENST00000545856 CYP2D6P10635 497 aa18.9■□□□□ 0.62
PRPF40A-212ENST00000545856 CDK8P49336 464 aa18.9■□□□□ 0.62
PRPF40A-212ENST00000545856 IQCA1Q86XH1 822 aa18.9■□□□□ 0.62
PRPF40A-212ENST00000545856 ZNF444Q8N0Y2 327 aaPredicted RBP18.9■□□□□ 0.62
PRPF40A-212ENST00000545856 TMEM39BQ9GZU3 492 aa18.9■□□□□ 0.62
PRPF40A-212ENST00000545856 TCP11L1Q9NUJ3 509 aa18.9■□□□□ 0.62
PRPF40A-212ENST00000545856 ATAD5Q96QE3 1844 aa18.89■□□□□ 0.61
PRPF40A-212ENST00000545856 NEDD4P46934 1319 aa18.89■□□□□ 0.61
PRPF40A-212ENST00000545856 CYP2D7A0A087X1C5 515 aa18.89■□□□□ 0.61
PRPF40A-212ENST00000545856 ADCK5Q3MIX3 580 aa18.89■□□□□ 0.61
PRPF40A-212ENST00000545856 ZFPM1Q8IX07 1006 aa18.89■□□□□ 0.61
PRPF40A-212ENST00000545856 AGXT2Q9BYV1 514 aa18.89■□□□□ 0.61
PRPF40A-212ENST00000545856 UNCXA6NJT0 531 aa18.88■□□□□ 0.61
PRPF40A-212ENST00000545856 NF2P35240 595 aa18.88■□□□□ 0.61
PRPF40A-212ENST00000545856 KRT26Q7Z3Y9 468 aa18.88■□□□□ 0.61
PRPF40A-212ENST00000545856 TMTC2Q8N394 836 aa18.88■□□□□ 0.61
PRPF40A-212ENST00000545856 TSHZ2Q9NRE2 1034 aa18.88■□□□□ 0.61
PRPF40A-212ENST00000545856 DOCK1Q14185 1865 aa18.88■□□□□ 0.61
PRPF40A-212ENST00000545856 ASTN2O75129 1339 aaPredicted RBP18.87■□□□□ 0.61
PRPF40A-212ENST00000545856 RASA1P20936 1047 aa18.87■□□□□ 0.61
PRPF40A-212ENST00000545856 SHMT1P34896 483 aa18.87■□□□□ 0.61
PRPF40A-212ENST00000545856 LIFRP42702 1097 aa18.87■□□□□ 0.61
PRPF40A-212ENST00000545856 EXOSC10Q01780 885 aaKnown RBP18.87■□□□□ 0.61
PRPF40A-212ENST00000545856 EAPPQ56P03 285 aaPredicted RBP18.87■□□□□ 0.61
PRPF40A-212ENST00000545856 NEDD1Q8NHV4 660 aa18.87■□□□□ 0.61
PRPF40A-212ENST00000545856 SNX21Q969T3 373 aa18.87■□□□□ 0.61
PRPF40A-212ENST00000545856 RRAGCQ9HB90 399 aa18.87■□□□□ 0.61
PRPF40A-212ENST00000545856 TOMM22Q9NS69 142 aa18.87■□□□□ 0.61
PRPF40A-212ENST00000545856 SYNPO2Q9UMS6 1093 aa18.87■□□□□ 0.61
PRPF40A-212ENST00000545856 TAF6LQ9Y6J9 622 aa18.87■□□□□ 0.61
PRPF40A-212ENST00000545856 TRPM7Q96QT4 1865 aa18.87■□□□□ 0.61
PRPF40A-212ENST00000545856 PAPPA2Q9BXP8 1791 aa18.86■□□□□ 0.61
PRPF40A-212ENST00000545856 ERICH2A1L162 156 aa18.86■□□□□ 0.61
PRPF40A-212ENST00000545856 TSPY2A6NKD2 308 aa18.86■□□□□ 0.61
PRPF40A-212ENST00000545856 B4E1Z4 1266 aa18.86■□□□□ 0.61
PRPF40A-212ENST00000545856 RANBP6O60518 1105 aaKnown RBP18.86■□□□□ 0.61
PRPF40A-212ENST00000545856 KDM4AO75164 1064 aa18.86■□□□□ 0.61
PRPF40A-212ENST00000545856 TSPY3P0CV98 308 aa18.86■□□□□ 0.61
PRPF40A-212ENST00000545856 TSPY8P0CW00 308 aa18.86■□□□□ 0.61
PRPF40A-212ENST00000545856 ANP32AP39687 249 aaKnown RBP18.86■□□□□ 0.61
PRPF40A-212ENST00000545856 NEK4P51957 841 aa18.86■□□□□ 0.61
PRPF40A-212ENST00000545856 RCAN1P53805 252 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms