RNA–Protein interactions for RNA: ENST00000536301.1

CHD4-205, Transcript of chromodomain helicase DNA binding protein 4, human

TSL 3

Gene CHD4, Length 107 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD4-205	ENST00000536301	SUGT1	Q9Y2Z0	365 aa		6.59	□□□□□ -1.35
CHD4-205	ENST00000536301	TCF20	Q9UGU0	1960 aa	Known RBP	6.58	□□□□□ -1.36
CHD4-205	ENST00000536301	CAPN2	P17655	700 aa		6.58	□□□□□ -1.36
CHD4-205	ENST00000536301	ATN1	P54259	1190 aa	Predicted RBP	6.58	□□□□□ -1.36
CHD4-205	ENST00000536301	HMGCS2	P54868	508 aa		6.58	□□□□□ -1.36
CHD4-205	ENST00000536301	JAG1	P78504	1218 aa		6.58	□□□□□ -1.36
CHD4-205	ENST00000536301	SPP2	Q13103	211 aa		6.58	□□□□□ -1.36
CHD4-205	ENST00000536301	SHROOM1	Q2M3G4	852 aa	Predicted RBP	6.58	□□□□□ -1.36
CHD4-205	ENST00000536301	RABL6	Q3YEC7	729 aa	Predicted RBP	6.58	□□□□□ -1.36
CHD4-205	ENST00000536301	SLC4A10	Q6U841	1118 aa		6.58	□□□□□ -1.36
CHD4-205	ENST00000536301	CHMP4A	Q9BY43	222 aa		6.58	□□□□□ -1.36
CHD4-205	ENST00000536301	PORCN	Q9H237	461 aa		6.58	□□□□□ -1.36
CHD4-205	ENST00000536301	C9orf78	Q9NZ63	289 aa	Predicted RBP	6.58	□□□□□ -1.36
CHD4-205	ENST00000536301	LRRFIP2	Q9Y608	721 aa	Known RBP	6.58	□□□□□ -1.36
CHD4-205	ENST00000536301	SMCHD1	A6NHR9	2005 aa		6.57	□□□□□ -1.36
CHD4-205	ENST00000536301	GAK	O14976	1311 aa		6.57	□□□□□ -1.36
CHD4-205	ENST00000536301	CTNND1	O60716	968 aa	Known RBP	6.57	□□□□□ -1.36
CHD4-205	ENST00000536301	ENTPD3	O75355	529 aa		6.57	□□□□□ -1.36
CHD4-205	ENST00000536301	IFIT1	P09914	478 aa	Known RBP	6.57	□□□□□ -1.36
CHD4-205	ENST00000536301	ADORA1	P30542	326 aa		6.57	□□□□□ -1.36
CHD4-205	ENST00000536301	PHKA1	P46020	1223 aa		6.57	□□□□□ -1.36
CHD4-205	ENST00000536301	RFX5	P48382	616 aa	Predicted RBP	6.57	□□□□□ -1.36
CHD4-205	ENST00000536301	PICALM	Q13492	652 aa		6.57	□□□□□ -1.36
CHD4-205	ENST00000536301		Q3C1V9	767 aa		6.57	□□□□□ -1.36
CHD4-205	ENST00000536301	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	6.57	□□□□□ -1.36
CHD4-205	ENST00000536301	WDR66	Q8TBY9	1149 aa		6.57	□□□□□ -1.36
CHD4-205	ENST00000536301	ZNF384	Q8TF68	577 aa		6.57	□□□□□ -1.36
CHD4-205	ENST00000536301	USP6NL	Q92738	828 aa		6.57	□□□□□ -1.36
CHD4-205	ENST00000536301	IDI2	Q9BXS1	227 aa		6.57	□□□□□ -1.36
CHD4-205	ENST00000536301	SENP6	Q9GZR1	1112 aa	Predicted RBP	6.57	□□□□□ -1.36
CHD4-205	ENST00000536301	PRKRIP1	Q9H875	184 aa	Predicted RBP	6.57	□□□□□ -1.36
CHD4-205	ENST00000536301	FLRT1	Q9NZU1	646 aa		6.57	□□□□□ -1.36
CHD4-205	ENST00000536301	MORF4L1	Q9UBU8	362 aa		6.57	□□□□□ -1.36
CHD4-205	ENST00000536301	SALL2	Q9Y467	1007 aa	Predicted RBP	6.57	□□□□□ -1.36
CHD4-205	ENST00000536301	UTY	O14607	1347 aa		6.56	□□□□□ -1.36
CHD4-205	ENST00000536301	ALDH1L1	O75891	902 aa		6.56	□□□□□ -1.36
CHD4-205	ENST00000536301	LDHB	P07195	334 aa	Known RBP	6.56	□□□□□ -1.36
CHD4-205	ENST00000536301	FOSL2	P15408	326 aa		6.56	□□□□□ -1.36
CHD4-205	ENST00000536301	ZKSCAN1	P17029	563 aa	Predicted RBP	6.56	□□□□□ -1.36
CHD4-205	ENST00000536301	ZEB1	P37275	1124 aa	Predicted RBP	6.56	□□□□□ -1.36
CHD4-205	ENST00000536301	GCLC	P48506	637 aa	Predicted RBP	6.56	□□□□□ -1.36
CHD4-205	ENST00000536301	RHBDL3	P58872	404 aa		6.56	□□□□□ -1.36
CHD4-205	ENST00000536301	RTP1	P59025	263 aa		6.56	□□□□□ -1.36
CHD4-205	ENST00000536301	PUM3	Q15397	648 aa	Known RBP	6.56	□□□□□ -1.36
CHD4-205	ENST00000536301	ATG9A	Q7Z3C6	839 aa		6.56	□□□□□ -1.36
CHD4-205	ENST00000536301	SH3RF1	Q7Z6J0	888 aa		6.56	□□□□□ -1.36
CHD4-205	ENST00000536301	PROCA1	Q8NCQ7	364 aa	Predicted RBP	6.56	□□□□□ -1.36
CHD4-205	ENST00000536301	TRPV1	Q8NER1	839 aa		6.56	□□□□□ -1.36
CHD4-205	ENST00000536301	P2RX7	Q99572	595 aa	Known RBP	6.56	□□□□□ -1.36
CHD4-205	ENST00000536301	LBHD1	Q9BQE6	289 aa	Predicted RBP	6.56	□□□□□ -1.36
CHD4-205	ENST00000536301	SRCIN1	Q9C0H9	1055 aa		6.56	□□□□□ -1.36
CHD4-205	ENST00000536301	PNMA3	Q9UL41	463 aa		6.56	□□□□□ -1.36
CHD4-205	ENST00000536301	NDUFB9	Q9Y6M9	179 aa		6.56	□□□□□ -1.36
CHD4-205	ENST00000536301	CDK5RAP2	Q96SN8	1893 aa		6.56	□□□□□ -1.36
CHD4-205	ENST00000536301	KIF16B	Q96L93	1317 aa		6.55	□□□□□ -1.36
CHD4-205	ENST00000536301	EYA2	O00167	538 aa		6.55	□□□□□ -1.36
CHD4-205	ENST00000536301	SLC5A1	P13866	664 aa		6.55	□□□□□ -1.36
CHD4-205	ENST00000536301	ITGB8	P26012	769 aa		6.55	□□□□□ -1.36
CHD4-205	ENST00000536301	BTD	P43251	543 aa		6.55	□□□□□ -1.36
CHD4-205	ENST00000536301	EPHB4	P54760	987 aa		6.55	□□□□□ -1.36
CHD4-205	ENST00000536301	GRIN2C	Q14957	1233 aa		6.55	□□□□□ -1.36
CHD4-205	ENST00000536301	CCDC27	Q2M243	656 aa		6.55	□□□□□ -1.36
CHD4-205	ENST00000536301	MORN1	Q5T089	497 aa		6.55	□□□□□ -1.36
CHD4-205	ENST00000536301	ANO1	Q5XXA6	986 aa		6.55	□□□□□ -1.36
CHD4-205	ENST00000536301	ZNF280C	Q8ND82	737 aa		6.55	□□□□□ -1.36
CHD4-205	ENST00000536301	BAD	Q92934	168 aa		6.55	□□□□□ -1.36
CHD4-205	ENST00000536301	NUDT12	Q9BQG2	462 aa		6.55	□□□□□ -1.36
CHD4-205	ENST00000536301	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	6.55	□□□□□ -1.36
CHD4-205	ENST00000536301	RBPJL	Q9UBG7	517 aa		6.55	□□□□□ -1.36
CHD4-205	ENST00000536301	ATP11B	Q9Y2G3	1177 aa		6.55	□□□□□ -1.36
CHD4-205	ENST00000536301	REV3L	O60673	3130 aa		6.54	□□□□□ -1.36
CHD4-205	ENST00000536301	IL16	Q14005	1332 aa		6.54	□□□□□ -1.36
CHD4-205	ENST00000536301	SALL1	Q9NSC2	1324 aa		6.54	□□□□□ -1.36
CHD4-205	ENST00000536301	PLXNA1	Q9UIW2	1896 aa		6.54	□□□□□ -1.36
CHD4-205	ENST00000536301	MYO5A	Q9Y4I1	1855 aa	Known RBP	6.54	□□□□□ -1.36
CHD4-205	ENST00000536301	TMEM265	A0A087WTH1	108 aa		6.54	□□□□□ -1.36
CHD4-205	ENST00000536301	TRIM43B	A6NCK2	446 aa		6.54	□□□□□ -1.36
CHD4-205	ENST00000536301	TNFRSF10A	O00220	468 aa		6.54	□□□□□ -1.36
CHD4-205	ENST00000536301	CNMD	O75829	334 aa		6.54	□□□□□ -1.36
CHD4-205	ENST00000536301	XRCC5	P13010	732 aa	Known RBP	6.54	□□□□□ -1.36
CHD4-205	ENST00000536301	PLA2G5	P39877	138 aa		6.54	□□□□□ -1.36
CHD4-205	ENST00000536301	CAP2	P40123	477 aa		6.54	□□□□□ -1.36
CHD4-205	ENST00000536301	HERVK_113	P62684	666 aa		6.54	□□□□□ -1.36
CHD4-205	ENST00000536301	ERVK-9	P63128	1117 aa		6.54	□□□□□ -1.36
CHD4-205	ENST00000536301	ERVK-24	P63145	666 aa		6.54	□□□□□ -1.36
CHD4-205	ENST00000536301	MTMR2	Q13614	643 aa		6.54	□□□□□ -1.36
CHD4-205	ENST00000536301	TRIM60	Q495X7	471 aa		6.54	□□□□□ -1.36
CHD4-205	ENST00000536301	SH3D19	Q5HYK7	790 aa		6.54	□□□□□ -1.36
CHD4-205	ENST00000536301	TJAP1	Q5JTD0	557 aa		6.54	□□□□□ -1.36
CHD4-205	ENST00000536301	GJC2	Q5T442	439 aa	Predicted RBP	6.54	□□□□□ -1.36
CHD4-205	ENST00000536301	GPR142	Q7Z601	462 aa		6.54	□□□□□ -1.36
CHD4-205	ENST00000536301	NPLOC4	Q8TAT6	608 aa		6.54	□□□□□ -1.36
CHD4-205	ENST00000536301	SOCS4	Q8WXH5	440 aa		6.54	□□□□□ -1.36
CHD4-205	ENST00000536301	LPIN2	Q92539	896 aa		6.54	□□□□□ -1.36
CHD4-205	ENST00000536301	TRIM43	Q96BQ3	446 aa	Predicted RBP	6.54	□□□□□ -1.36
CHD4-205	ENST00000536301	PAGR1	Q9BTK6	254 aa		6.54	□□□□□ -1.36
CHD4-205	ENST00000536301	SIL1	Q9H173	461 aa		6.54	□□□□□ -1.36
CHD4-205	ENST00000536301	DNAJC18	Q9H819	358 aa		6.54	□□□□□ -1.36
CHD4-205	ENST00000536301	PRDM5	Q9NQX1	630 aa	Predicted RBP	6.54	□□□□□ -1.36
CHD4-205	ENST00000536301	PDLIM7	Q9NR12	457 aa		6.54	□□□□□ -1.36

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