RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	CTSH	P09668	335 aa		4.78	□□□□□ -1.64
CD44-238	ENST00000534296	SPINK2	P20155	84 aa		4.78	□□□□□ -1.64
CD44-238	ENST00000534296	RPL6	Q02878	288 aa	Known RBP	4.78	□□□□□ -1.64
CD44-238	ENST00000534296	LMNB2	Q03252	620 aa		4.78	□□□□□ -1.64
CD44-238	ENST00000534296	SNAP47	Q5SQN1	464 aa		4.78	□□□□□ -1.64
CD44-238	ENST00000534296	RASIP1	Q5U651	963 aa		4.78	□□□□□ -1.64
CD44-238	ENST00000534296	MPRIP	Q6WCQ1	1025 aa		4.78	□□□□□ -1.64
CD44-238	ENST00000534296	DTX1	Q86Y01	620 aa		4.78	□□□□□ -1.64
CD44-238	ENST00000534296	HID1	Q8IV36	788 aa		4.78	□□□□□ -1.64
CD44-238	ENST00000534296	TOP6BL	Q8N6T0	577 aa		4.78	□□□□□ -1.64
CD44-238	ENST00000534296	PHC3	Q8NDX5	983 aa		4.78	□□□□□ -1.64
CD44-238	ENST00000534296	JARID2	Q92833	1246 aa	Predicted RBP	4.78	□□□□□ -1.64
CD44-238	ENST00000534296	GATA6	Q92908	595 aa		4.78	□□□□□ -1.64
CD44-238	ENST00000534296	MISP3	Q96FF7	219 aa		4.78	□□□□□ -1.64
CD44-238	ENST00000534296	FBXL18	Q96ME1	805 aa		4.78	□□□□□ -1.64
CD44-238	ENST00000534296	TMEM74	Q96NL1	305 aa		4.78	□□□□□ -1.64
CD44-238	ENST00000534296	RSRP1	Q9BUV0	290 aa		4.78	□□□□□ -1.64
CD44-238	ENST00000534296	WNT10A	Q9GZT5	417 aa		4.78	□□□□□ -1.64
CD44-238	ENST00000534296	GNAT3	A8MTJ3	354 aa		4.77	□□□□□ -1.65
CD44-238	ENST00000534296	ZNF16	P17020	682 aa	Predicted RBP	4.77	□□□□□ -1.65
CD44-238	ENST00000534296	TFE3	P19532	575 aa	Predicted RBP	4.77	□□□□□ -1.65
CD44-238	ENST00000534296	TAGLN	Q01995	201 aa	Known RBP	4.77	□□□□□ -1.65
CD44-238	ENST00000534296	RING1	Q06587	406 aa		4.77	□□□□□ -1.65
CD44-238	ENST00000534296	MLEC	Q14165	292 aa		4.77	□□□□□ -1.65
CD44-238	ENST00000534296	INPP5A	Q14642	412 aa		4.77	□□□□□ -1.65
CD44-238	ENST00000534296	ARMCX6	Q7L4S7	300 aa		4.77	□□□□□ -1.65
CD44-238	ENST00000534296	CYFIP1	Q7L576	1253 aa		4.77	□□□□□ -1.65
CD44-238	ENST00000534296	MFSD2A	Q8NA29	543 aa		4.77	□□□□□ -1.65
CD44-238	ENST00000534296	PSMG3-AS1	Q96PY0	264 aa		4.77	□□□□□ -1.65
CD44-238	ENST00000534296	DUSP23	Q9BVJ7	150 aa		4.77	□□□□□ -1.65
CD44-238	ENST00000534296	MKNK2	Q9HBH9	465 aa		4.77	□□□□□ -1.65
CD44-238	ENST00000534296	PRDM10	Q9NQV6	1147 aa		4.77	□□□□□ -1.65
CD44-238	ENST00000534296	PCDHB5	Q9Y5E4	795 aa		4.77	□□□□□ -1.65
CD44-238	ENST00000534296	PGR	P06401	933 aa		4.76	□□□□□ -1.65
CD44-238	ENST00000534296	CYP7A1	P22680	504 aa		4.76	□□□□□ -1.65
CD44-238	ENST00000534296	HOXA10	P31260	410 aa	Predicted RBP	4.76	□□□□□ -1.65
CD44-238	ENST00000534296	GRK4	P32298	578 aa		4.76	□□□□□ -1.65
CD44-238	ENST00000534296	CAMK2G	Q13555	558 aa	Predicted RBP	4.76	□□□□□ -1.65
CD44-238	ENST00000534296	MSMP	Q1L6U9	139 aa		4.76	□□□□□ -1.65
CD44-238	ENST00000534296	AGBL5	Q8NDL9	886 aa		4.76	□□□□□ -1.65
CD44-238	ENST00000534296	NETO1	Q8TDF5	533 aa		4.76	□□□□□ -1.65
CD44-238	ENST00000534296	COX4I2	Q96KJ9	171 aa		4.76	□□□□□ -1.65
CD44-238	ENST00000534296	FOXQ1	Q9C009	403 aa		4.76	□□□□□ -1.65
CD44-238	ENST00000534296	PRDM5	Q9NQX1	630 aa	Predicted RBP	4.76	□□□□□ -1.65
CD44-238	ENST00000534296	GGT7	Q9UJ14	662 aa		4.76	□□□□□ -1.65
CD44-238	ENST00000534296	ADAM30	Q9UKF2	790 aa		4.76	□□□□□ -1.65
CD44-238	ENST00000534296	TPX2	Q9ULW0	747 aa	Known RBP	4.76	□□□□□ -1.65
CD44-238	ENST00000534296	TLR6	Q9Y2C9	796 aa		4.76	□□□□□ -1.65
CD44-238	ENST00000534296	CCDC9	Q9Y3X0	531 aa	Known RBP	4.76	□□□□□ -1.65
CD44-238	ENST00000534296	PRNP	P04156	253 aa		4.75	□□□□□ -1.65
CD44-238	ENST00000534296	CAP2	P40123	477 aa		4.75	□□□□□ -1.65
CD44-238	ENST00000534296	YARS	P54577	528 aa	Known RBP	4.75	□□□□□ -1.65
CD44-238	ENST00000534296	GP2	P55259	537 aa	Known RBP	4.75	□□□□□ -1.65
CD44-238	ENST00000534296	CHMP4BP1	P59074	171 aa		4.75	□□□□□ -1.65
CD44-238	ENST00000534296	PTPN11	Q06124	597 aa	Predicted RBP	4.75	□□□□□ -1.65
CD44-238	ENST00000534296	MRPL58	Q14197	206 aa	Known RBP	4.75	□□□□□ -1.65
CD44-238	ENST00000534296	IFI16	Q16666	785 aa	Known RBP	4.75	□□□□□ -1.65
CD44-238	ENST00000534296	CWF19L2	Q2TBE0	894 aa	Known RBP	4.75	□□□□□ -1.65
CD44-238	ENST00000534296	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	4.75	□□□□□ -1.65
CD44-238	ENST00000534296	TP53INP2	Q8IXH6	220 aa		4.75	□□□□□ -1.65
CD44-238	ENST00000534296	TMEM87A	Q8NBN3	555 aa		4.75	□□□□□ -1.65
CD44-238	ENST00000534296	FLCN	Q8NFG4	579 aa		4.75	□□□□□ -1.65
CD44-238	ENST00000534296	GATAD2B	Q8WXI9	593 aa		4.75	□□□□□ -1.65
CD44-238	ENST00000534296	MIPEP	Q99797	713 aa		4.75	□□□□□ -1.65
CD44-238	ENST00000534296	MAPK8IP1	Q9UQF2	711 aa		4.75	□□□□□ -1.65
CD44-238	ENST00000534296	SLC5A6	Q9Y289	635 aa		4.75	□□□□□ -1.65
CD44-238	ENST00000534296	SUPT16H	Q9Y5B9	1047 aa	Known RBP	4.75	□□□□□ -1.65
CD44-238	ENST00000534296	TMEM265	A0A087WTH1	108 aa		4.74	□□□□□ -1.65
CD44-238	ENST00000534296	RBM47	A0AV96	593 aa	Known RBP	4.74	□□□□□ -1.65
CD44-238	ENST00000534296	MINDY4B	A8MYZ0	360 aa		4.74	□□□□□ -1.65
CD44-238	ENST00000534296	IGF2BP3	O00425	579 aa	Known RBP eCLIP	4.74	□□□□□ -1.65
CD44-238	ENST00000534296	MED26	O95402	600 aa		4.74	□□□□□ -1.65
CD44-238	ENST00000534296	PF4	P02776	101 aa		4.74	□□□□□ -1.65
CD44-238	ENST00000534296	CEACAM5	P06731	702 aa		4.74	□□□□□ -1.65
CD44-238	ENST00000534296	ITIH2	P19823	946 aa		4.74	□□□□□ -1.65
CD44-238	ENST00000534296	NTF4	P34130	210 aa		4.74	□□□□□ -1.65
CD44-238	ENST00000534296	IRAK1	P51617	712 aa		4.74	□□□□□ -1.65
CD44-238	ENST00000534296	TRIM26	Q12899	539 aa	Predicted RBP	4.74	□□□□□ -1.65
CD44-238	ENST00000534296	MPP2	Q14168	576 aa		4.74	□□□□□ -1.65
CD44-238	ENST00000534296	SLC6A19	Q695T7	634 aa		4.74	□□□□□ -1.65
CD44-238	ENST00000534296	GOLM1	Q8NBJ4	401 aa		4.74	□□□□□ -1.65
CD44-238	ENST00000534296	HRASLS5	Q96KN8	279 aa		4.74	□□□□□ -1.65
CD44-238	ENST00000534296	RHOV	Q96L33	236 aa		4.74	□□□□□ -1.65
CD44-238	ENST00000534296	KBTBD4	Q9NVX7	518 aa		4.74	□□□□□ -1.65
CD44-238	ENST00000534296	CCDC39	Q9UFE4	941 aa		4.74	□□□□□ -1.65
CD44-238	ENST00000534296	ZC3H7B	Q9UGR2	993 aa	Known RBP	4.74	□□□□□ -1.65
CD44-238	ENST00000534296	FAM155A	B1AL88	458 aa	Predicted RBP	4.73	□□□□□ -1.65
CD44-238	ENST00000534296		F6X3S4	739 aa		4.73	□□□□□ -1.65
CD44-238	ENST00000534296	GFRA2	O00451	464 aa		4.73	□□□□□ -1.65
CD44-238	ENST00000534296	CILP	O75339	1184 aa		4.73	□□□□□ -1.65
CD44-238	ENST00000534296	LEFTY1	O75610	366 aa		4.73	□□□□□ -1.65
CD44-238	ENST00000534296	CST3	P01034	146 aa	Predicted RBP	4.73	□□□□□ -1.65
CD44-238	ENST00000534296	PLCG1	P19174	1290 aa		4.73	□□□□□ -1.65
CD44-238	ENST00000534296	ZNF76	P36508	570 aa		4.73	□□□□□ -1.65
CD44-238	ENST00000534296	ETV3	P41162	512 aa		4.73	□□□□□ -1.65
CD44-238	ENST00000534296	FAM160A1	Q05DH4	1040 aa		4.73	□□□□□ -1.65
CD44-238	ENST00000534296	SFRP5	Q5T4F7	317 aa		4.73	□□□□□ -1.65
CD44-238	ENST00000534296	LETMD1	Q6P1Q0	360 aa		4.73	□□□□□ -1.65
CD44-238	ENST00000534296	BNC2	Q6ZN30	1099 aa	Predicted RBP	4.73	□□□□□ -1.65
CD44-238	ENST00000534296	ERMP1	Q7Z2K6	904 aa		4.73	□□□□□ -1.65

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