RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 ARPP21Q9UBL0 812 aaPredicted RBP25■■□□□ 1.59
VPS28-212ENST00000530836 ADAMTSL1Q8N6G6 1762 aa25■■□□□ 1.59
VPS28-212ENST00000530836 MFSD6Q6ZSS7 791 aa24.99■■□□□ 1.59
VPS28-212ENST00000530836 DCP1AQ9NPI6 582 aaPredicted RBP24.99■■□□□ 1.59
VPS28-212ENST00000530836 FOXD4L1Q9NU39 408 aa24.99■■□□□ 1.59
VPS28-212ENST00000530836 NT5C2P49902 561 aa24.98■■□□□ 1.59
VPS28-212ENST00000530836 SBK1Q52WX2 424 aa24.98■■□□□ 1.59
VPS28-212ENST00000530836 TCEANC2Q96MN5 208 aa24.98■■□□□ 1.59
VPS28-212ENST00000530836 TPCN1Q9ULQ1 816 aa24.98■■□□□ 1.59
VPS28-212ENST00000530836 MYH2Q9UKX2 1941 aa24.98■■□□□ 1.59
VPS28-212ENST00000530836 PITPNM2Q9BZ72 1349 aa24.98■■□□□ 1.59
VPS28-212ENST00000530836 BTDP43251 543 aa24.97■■□□□ 1.59
VPS28-212ENST00000530836 COL9A3Q14050 684 aaPredicted RBP24.97■■□□□ 1.59
VPS28-212ENST00000530836 MTA3Q9BTC8 594 aa24.97■■□□□ 1.59
VPS28-212ENST00000530836 TDRD3Q9H7E2 651 aaKnown RBP24.97■■□□□ 1.59
VPS28-212ENST00000530836 PRC1O43663 620 aa24.97■■□□□ 1.59
VPS28-212ENST00000530836 SLC3A2P08195 630 aaKnown RBP24.97■■□□□ 1.59
VPS28-212ENST00000530836 USP5P45974 858 aa24.97■■□□□ 1.59
VPS28-212ENST00000530836 NUCB2P80303 420 aa24.97■■□□□ 1.59
VPS28-212ENST00000530836 ME3Q16798 604 aa24.97■■□□□ 1.59
VPS28-212ENST00000530836 CDC37L1Q7L3B6 337 aa24.97■■□□□ 1.59
VPS28-212ENST00000530836 ZNF70Q9UC06 446 aaPredicted RBP24.97■■□□□ 1.59
VPS28-212ENST00000530836 ITGBL1O95965 494 aaPredicted RBP24.96■■□□□ 1.59
VPS28-212ENST00000530836 SPDYE2Q495Y8 402 aa24.96■■□□□ 1.59
VPS28-212ENST00000530836 CTR9Q6PD62 1173 aa24.96■■□□□ 1.59
VPS28-212ENST00000530836 AMOTL1Q8IY63 956 aa24.96■■□□□ 1.59
VPS28-212ENST00000530836 BRF1Q92994 677 aa24.96■■□□□ 1.59
VPS28-212ENST00000530836 TMEM87BQ96K49 555 aa24.96■■□□□ 1.59
VPS28-212ENST00000530836 CLRN2A0PK11 232 aa24.95■■□□□ 1.58
VPS28-212ENST00000530836 MINDY4BA8MYZ0 360 aa24.95■■□□□ 1.58
VPS28-212ENST00000530836 CTDSPL2Q05D32 466 aa24.95■■□□□ 1.58
VPS28-212ENST00000530836 KRT26Q7Z3Y9 468 aa24.95■■□□□ 1.58
VPS28-212ENST00000530836 SH3RF3Q8TEJ3 882 aaPredicted RBP24.95■■□□□ 1.58
VPS28-212ENST00000530836 USP17L12C9JPN9 530 aa24.94■■□□□ 1.58
VPS28-212ENST00000530836 USP17L21D6R901 530 aa24.94■■□□□ 1.58
VPS28-212ENST00000530836 EVCP57679 992 aa24.94■■□□□ 1.58
VPS28-212ENST00000530836 USP48Q86UV5 1035 aa24.94■■□□□ 1.58
VPS28-212ENST00000530836 SULF1Q8IWU6 871 aa24.94■■□□□ 1.58
VPS28-212ENST00000530836 ZNF274Q96GC6 653 aaPredicted RBP24.94■■□□□ 1.58
VPS28-212ENST00000530836 GLIS2Q9BZE0 524 aaPredicted RBP24.94■■□□□ 1.58
VPS28-212ENST00000530836 MKRN1Q9UHC7 482 aaKnown RBP24.94■■□□□ 1.58
VPS28-212ENST00000530836 CDC42EP5Q6NZY7 148 aa24.94■■□□□ 1.58
VPS28-212ENST00000530836 APOBEC3FQ8IUX4 373 aaKnown RBP24.94■■□□□ 1.58
VPS28-212ENST00000530836 LARP6Q9BRS8 491 aaKnown RBP24.94■■□□□ 1.58
VPS28-212ENST00000530836 NEDD4P46934 1319 aa24.93■■□□□ 1.58
VPS28-212ENST00000530836 FGRP09769 529 aa24.93■■□□□ 1.58
VPS28-212ENST00000530836 PDIA4P13667 645 aaKnown RBP24.93■■□□□ 1.58
VPS28-212ENST00000530836 VEZTQ9HBM0 779 aa24.93■■□□□ 1.58
VPS28-212ENST00000530836 USP40Q9NVE5 1235 aa24.93■■□□□ 1.58
VPS28-212ENST00000530836 LARGE1O95461 756 aa24.92■■□□□ 1.58
VPS28-212ENST00000530836 ANTXR2P58335 489 aa24.92■■□□□ 1.58
VPS28-212ENST00000530836 TEX11Q8IYF3 940 aa24.92■■□□□ 1.58
VPS28-212ENST00000530836 ESR2Q92731 530 aa24.92■■□□□ 1.58
VPS28-212ENST00000530836 MCM9Q9NXL9 1143 aa24.92■■□□□ 1.58
VPS28-212ENST00000530836 SCAF8Q9UPN6 1271 aaKnown RBP24.92■■□□□ 1.58
VPS28-212ENST00000530836 B4E1Z4 1266 aa24.91■■□□□ 1.58
VPS28-212ENST00000530836 RHBDL3P58872 404 aa24.91■■□□□ 1.58
VPS28-212ENST00000530836 SART3Q15020 963 aaKnown RBP24.91■■□□□ 1.58
VPS28-212ENST00000530836 CCDC83Q8IWF9 413 aa24.91■■□□□ 1.58
VPS28-212ENST00000530836 LRRC2Q9BYS8 371 aa24.91■■□□□ 1.58
VPS28-212ENST00000530836 ANGEL1Q9UNK9 670 aaKnown RBP24.91■■□□□ 1.58
VPS28-212ENST00000530836 SMC3Q9UQE7 1217 aa24.91■■□□□ 1.58
VPS28-212ENST00000530836 ADM5C9JUS6 153 aa24.9■■□□□ 1.58
VPS28-212ENST00000530836 C1QTNF8P60827 252 aa24.9■■□□□ 1.58
VPS28-212ENST00000530836 RAB3GAP1Q15042 981 aa24.9■■□□□ 1.58
VPS28-212ENST00000530836 FKBP1CQ5VVH2 108 aa24.9■■□□□ 1.58
VPS28-212ENST00000530836 CHST3Q7LGC8 479 aa24.9■■□□□ 1.58
VPS28-212ENST00000530836 TGFBRAP1Q8WUH2 860 aa24.9■■□□□ 1.58
VPS28-212ENST00000530836 TMOD2Q9NZR1 351 aa24.9■■□□□ 1.58
VPS28-212ENST00000530836 PASKQ96RG2 1323 aa24.9■■□□□ 1.58
VPS28-212ENST00000530836 TRAF5O00463 557 aa24.9■■□□□ 1.58
VPS28-212ENST00000530836 PFKFB2O60825 505 aa24.9■■□□□ 1.58
VPS28-212ENST00000530836 PDE4BQ07343 736 aa24.9■■□□□ 1.58
VPS28-212ENST00000530836 TNFAIP1Q13829 316 aa24.9■■□□□ 1.58
VPS28-212ENST00000530836 GTF3C6Q969F1 213 aa24.9■■□□□ 1.58
VPS28-212ENST00000530836 DEFB129Q9H1M3 183 aa24.9■■□□□ 1.58
VPS28-212ENST00000530836 ORC4O43929 436 aa24.89■■□□□ 1.57
VPS28-212ENST00000530836 KDM4AO75164 1064 aa24.89■■□□□ 1.57
VPS28-212ENST00000530836 CACNB3P54284 484 aa24.89■■□□□ 1.57
VPS28-212ENST00000530836 C12orf60Q5U649 245 aa24.89■■□□□ 1.57
VPS28-212ENST00000530836 DLK2Q6UY11 383 aa24.89■■□□□ 1.57
VPS28-212ENST00000530836 CYB5R4Q7L1T6 521 aa24.89■■□□□ 1.57
VPS28-212ENST00000530836 TMTC2Q8N394 836 aa24.89■■□□□ 1.57
VPS28-212ENST00000530836 LLPHQ9BRT6 129 aaKnown RBP24.89■■□□□ 1.57
VPS28-212ENST00000530836 TOMM22Q9NS69 142 aa24.89■■□□□ 1.57
VPS28-212ENST00000530836 ZSWIM5Q9P217 1185 aa24.89■■□□□ 1.57
VPS28-212ENST00000530836 TCP10L2B9ZVM9 353 aa24.88■■□□□ 1.57
VPS28-212ENST00000530836 LIFRP42702 1097 aa24.88■■□□□ 1.57
VPS28-212ENST00000530836 APOBRQ0VD83 1088 aa24.88■■□□□ 1.57
VPS28-212ENST00000530836 ZNF287Q9HBT7 754 aa24.88■■□□□ 1.57
VPS28-212ENST00000530836 ROBO3Q96MS0 1386 aa24.88■■□□□ 1.57
VPS28-212ENST00000530836 ERICH2A1L162 156 aa24.87■■□□□ 1.57
VPS28-212ENST00000530836 SH2B2O14492 632 aaPredicted RBP24.87■■□□□ 1.57
VPS28-212ENST00000530836 FMR1Q06787 632 aaKnown RBP eCLIP24.87■■□□□ 1.57
VPS28-212ENST00000530836 RASA3Q14644 834 aa24.87■■□□□ 1.57
VPS28-212ENST00000530836 IDI2Q9BXS1 227 aa24.87■■□□□ 1.57
VPS28-212ENST00000530836 PPP2R3BQ9Y5P8 575 aa24.87■■□□□ 1.57
VPS28-212ENST00000530836 BAZ2AQ9UIF9 1905 aaKnown RBP24.87■■□□□ 1.57
VPS28-212ENST00000530836 LAMB1P07942 1786 aa24.87■■□□□ 1.57
VPS28-212ENST00000530836 DHX16O60231 1041 aaKnown RBP24.86■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms