RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 DUSP23Q9BVJ7 150 aa7.14□□□□□ -1.27
CD44-217ENST00000525348 LRRC4CQ9HCJ2 640 aa7.14□□□□□ -1.27
CD44-217ENST00000525348 ZC3H7BQ9UGR2 993 aaKnown RBP7.14□□□□□ -1.27
CD44-217ENST00000525348 CYP27A1Q02318 531 aa7.13□□□□□ -1.27
CD44-217ENST00000525348 DUSP27Q5VZP5 1158 aa7.13□□□□□ -1.27
CD44-217ENST00000525348 BNC2Q6ZN30 1099 aaPredicted RBP7.13□□□□□ -1.27
CD44-217ENST00000525348 HDXQ7Z353 690 aa7.13□□□□□ -1.27
CD44-217ENST00000525348 RHOVQ96L33 236 aa7.13□□□□□ -1.27
CD44-217ENST00000525348 WNT10AQ9GZT5 417 aa7.13□□□□□ -1.27
CD44-217ENST00000525348 MIR1-1HGQ9H1L0 117 aa7.13□□□□□ -1.27
CD44-217ENST00000525348 COPRSQ9NQ92 184 aa7.13□□□□□ -1.27
CD44-217ENST00000525348 PICK1Q9NRD5 415 aa7.13□□□□□ -1.27
CD44-217ENST00000525348 SNCAIPQ9Y6H5 919 aa7.13□□□□□ -1.27
CD44-217ENST00000525348 PF4P02776 101 aa7.12□□□□□ -1.27
CD44-217ENST00000525348 SLBPQ14493 270 aaKnown RBP eCLIP7.12□□□□□ -1.27
CD44-217ENST00000525348 NKG7Q16617 165 aa7.12□□□□□ -1.27
CD44-217ENST00000525348 FAM214BQ7L5A3 538 aa7.12□□□□□ -1.27
CD44-217ENST00000525348 ERMP1Q7Z2K6 904 aa7.12□□□□□ -1.27
CD44-217ENST00000525348 FAM181AQ8N9Y4 354 aa7.12□□□□□ -1.27
CD44-217ENST00000525348 JARID2Q92833 1246 aaPredicted RBP7.12□□□□□ -1.27
CD44-217ENST00000525348 RLBP1P12271 317 aa7.11□□□□□ -1.27
CD44-217ENST00000525348 LMNB1P20700 586 aa7.11□□□□□ -1.27
CD44-217ENST00000525348 GRK4P32298 578 aa7.11□□□□□ -1.27
CD44-217ENST00000525348 LMNB2Q03252 620 aa7.11□□□□□ -1.27
CD44-217ENST00000525348 CAMK2GQ13555 558 aaPredicted RBP7.11□□□□□ -1.27
CD44-217ENST00000525348 ARMCX6Q7L4S7 300 aa7.11□□□□□ -1.27
CD44-217ENST00000525348 NBPF11Q86T75 865 aa7.11□□□□□ -1.27
CD44-217ENST00000525348 ZNF507Q8TCN5 953 aa7.11□□□□□ -1.27
CD44-217ENST00000525348 HEXIM2Q96MH2 286 aaKnown RBP7.11□□□□□ -1.27
CD44-217ENST00000525348 TMEM74Q96NL1 305 aa7.11□□□□□ -1.27
CD44-217ENST00000525348 RSRP1Q9BUV0 290 aa7.11□□□□□ -1.27
CD44-217ENST00000525348 FAM221AA4D161 298 aa7.1□□□□□ -1.27
CD44-217ENST00000525348 F13A1P00488 732 aa7.1□□□□□ -1.27
CD44-217ENST00000525348 PRNPP04156 253 aa7.1□□□□□ -1.27
CD44-217ENST00000525348 GARTP22102 1010 aa7.1□□□□□ -1.27
CD44-217ENST00000525348 TSNAXIP1Q2TAA8 658 aa7.1□□□□□ -1.27
CD44-217ENST00000525348 CYP27C1Q4G0S4 372 aa7.1□□□□□ -1.27
CD44-217ENST00000525348 WFDC3Q8IUB2 231 aa7.1□□□□□ -1.27
CD44-217ENST00000525348 PRDM10Q9NQV6 1147 aa7.1□□□□□ -1.27
CD44-217ENST00000525348 KBTBD4Q9NVX7 518 aa7.1□□□□□ -1.27
CD44-217ENST00000525348 MINDY4BA8MYZ0 360 aa7.09□□□□□ -1.27
CD44-217ENST00000525348 EOMESO95936 686 aa7.09□□□□□ -1.27
CD44-217ENST00000525348 GBP2P32456 591 aaPredicted RBP7.09□□□□□ -1.27
CD44-217ENST00000525348 ETF1P62495 437 aaKnown RBP7.09□□□□□ -1.27
CD44-217ENST00000525348 RPL6Q02878 288 aaKnown RBP7.09□□□□□ -1.27
CD44-217ENST00000525348 FAM160A1Q05DH4 1040 aa7.09□□□□□ -1.27
CD44-217ENST00000525348 CDC37L1Q7L3B6 337 aa7.09□□□□□ -1.27
CD44-217ENST00000525348 PLD6Q8N2A8 252 aaKnown RBP7.09□□□□□ -1.27
CD44-217ENST00000525348 CCDC39Q9UFE4 941 aa7.09□□□□□ -1.27
CD44-217ENST00000525348 CORINQ9Y5Q5 1042 aa7.09□□□□□ -1.27
CD44-217ENST00000525348 OAS3Q9Y6K5 1087 aaKnown RBP7.09□□□□□ -1.27
CD44-217ENST00000525348 CNTNAP4Q9C0A0 1308 aa7.08□□□□□ -1.28
CD44-217ENST00000525348 RBM47A0AV96 593 aaKnown RBP7.08□□□□□ -1.28
CD44-217ENST00000525348 CILPO75339 1184 aa7.08□□□□□ -1.28
CD44-217ENST00000525348 LRIG2O94898 1065 aa7.08□□□□□ -1.28
CD44-217ENST00000525348 SLITRK5O94991 958 aa7.08□□□□□ -1.28
CD44-217ENST00000525348 OXCT1P55809 520 aa7.08□□□□□ -1.28
CD44-217ENST00000525348 CCDC84Q86UT8 332 aaPredicted RBP7.08□□□□□ -1.28
CD44-217ENST00000525348 RELL1Q8IUW5 271 aa7.08□□□□□ -1.28
CD44-217ENST00000525348 KCT2Q8NC54 265 aa7.08□□□□□ -1.28
CD44-217ENST00000525348 TJP2Q9UDY2 1190 aa7.08□□□□□ -1.28
CD44-217ENST00000525348 PLAGL2Q9UPG8 496 aa7.08□□□□□ -1.28
CD44-217ENST00000525348 CAP2P40123 477 aa7.07□□□□□ -1.28
CD44-217ENST00000525348 GP2P55259 537 aaKnown RBP7.07□□□□□ -1.28
CD44-217ENST00000525348 PRAMEF13Q5VWM6 474 aa7.07□□□□□ -1.28
CD44-217ENST00000525348 HID1Q8IV36 788 aa7.07□□□□□ -1.28
CD44-217ENST00000525348 FBXO27Q8NI29 283 aa7.07□□□□□ -1.28
CD44-217ENST00000525348 GATAD2BQ8WXI9 593 aa7.07□□□□□ -1.28
CD44-217ENST00000525348 FOXQ1Q9C009 403 aa7.07□□□□□ -1.28
CD44-217ENST00000525348 BSDC1Q9NW68 430 aaPredicted RBP7.07□□□□□ -1.28
CD44-217ENST00000525348 TACC3Q9Y6A5 838 aa7.07□□□□□ -1.28
CD44-217ENST00000525348 WNT11O96014 354 aa7.06□□□□□ -1.28
CD44-217ENST00000525348 FBXL19Q6PCT2 694 aa7.06□□□□□ -1.28
CD44-217ENST00000525348 GOLM1Q8NBJ4 401 aa7.06□□□□□ -1.28
CD44-217ENST00000525348 RIN3Q8TB24 985 aa7.06□□□□□ -1.28
CD44-217ENST00000525348 ACSF2Q96CM8 615 aaPredicted RBP7.06□□□□□ -1.28
CD44-217ENST00000525348 DPH2Q9BQC3 489 aaPredicted RBP7.06□□□□□ -1.28
CD44-217ENST00000525348 POLR3KQ9Y2Y1 108 aaPredicted RBP7.06□□□□□ -1.28
CD44-217ENST00000525348 CST3P01034 146 aaPredicted RBP7.05□□□□□ -1.28
CD44-217ENST00000525348 PGRP06401 933 aa7.05□□□□□ -1.28
CD44-217ENST00000525348 ITGAEP38570 1179 aa7.05□□□□□ -1.28
CD44-217ENST00000525348 PWP1Q13610 501 aa7.05□□□□□ -1.28
CD44-217ENST00000525348 SNAP47Q5SQN1 464 aa7.05□□□□□ -1.28
CD44-217ENST00000525348 ZNF574Q6ZN55 896 aaPredicted RBP7.05□□□□□ -1.28
CD44-217ENST00000525348 VSIG10LQ86VR7 867 aa7.05□□□□□ -1.28
CD44-217ENST00000525348 XAGE3Q8WTP9 111 aa7.05□□□□□ -1.28
CD44-217ENST00000525348 BCL7CQ8WUZ0 217 aaPredicted RBP7.05□□□□□ -1.28
CD44-217ENST00000525348 MIPEPQ99797 713 aa7.05□□□□□ -1.28
CD44-217ENST00000525348 BACH2Q9BYV9 841 aa7.05□□□□□ -1.28
CD44-217ENST00000525348 KCNQ5Q9NR82 932 aa7.05□□□□□ -1.28
CD44-217ENST00000525348 GGT7Q9UJ14 662 aa7.05□□□□□ -1.28
CD44-217ENST00000525348 CEACAM5P06731 702 aa7.04□□□□□ -1.28
CD44-217ENST00000525348 ITIH2P19823 946 aa7.04□□□□□ -1.28
CD44-217ENST00000525348 BNIP3Q12983 259 aa7.04□□□□□ -1.28
CD44-217ENST00000525348 SPRED2Q7Z698 418 aa7.04□□□□□ -1.28
CD44-217ENST00000525348 MRPL41Q8IXM3 137 aaKnown RBP7.04□□□□□ -1.28
CD44-217ENST00000525348 TMEM87AQ8NBN3 555 aa7.04□□□□□ -1.28
CD44-217ENST00000525348 NETO1Q8TDF5 533 aa7.04□□□□□ -1.28
CD44-217ENST00000525348 TMEM87BQ96K49 555 aa7.04□□□□□ -1.28
CD44-217ENST00000525348 PAK6Q9NQU5 681 aaPredicted RBP7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 156.9 ms