RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 PXDNQ92626 1479 aa9.54□□□□□ -0.88
CSMD1-213ENST00000523488 MAP3K19Q56UN5 1328 aa9.54□□□□□ -0.88
CSMD1-213ENST00000523488 NBPF7P0C2Y1 421 aaPredicted RBP9.53□□□□□ -0.88
CSMD1-213ENST00000523488 AFAP1L1Q8TED9 768 aa9.53□□□□□ -0.88
CSMD1-213ENST00000523488 CNKSR2Q8WXI2 1034 aa9.53□□□□□ -0.88
CSMD1-213ENST00000523488 SMARCC1Q92922 1105 aaPredicted RBP9.53□□□□□ -0.88
CSMD1-213ENST00000523488 BICC1Q9H694 974 aaKnown RBP9.53□□□□□ -0.88
CSMD1-213ENST00000523488 FAM204AQ9H8W3 233 aa9.53□□□□□ -0.88
CSMD1-213ENST00000523488 EBF2Q9HAK2 575 aa9.53□□□□□ -0.88
CSMD1-213ENST00000523488 COL18A1P39060 1754 aa9.53□□□□□ -0.88
CSMD1-213ENST00000523488 CHUKO15111 745 aa9.53□□□□□ -0.88
CSMD1-213ENST00000523488 RNF40O75150 1001 aa9.53□□□□□ -0.88
CSMD1-213ENST00000523488 IBSPP21815 317 aaPredicted RBP9.53□□□□□ -0.88
CSMD1-213ENST00000523488 ELF1P32519 619 aa9.53□□□□□ -0.88
CSMD1-213ENST00000523488 ACTN3Q08043 901 aaPredicted RBP9.53□□□□□ -0.88
CSMD1-213ENST00000523488 MORC3Q14149 939 aa9.53□□□□□ -0.88
CSMD1-213ENST00000523488 CFAP100Q494V2 611 aa9.53□□□□□ -0.88
CSMD1-213ENST00000523488 KAZALD1Q96I82 304 aa9.53□□□□□ -0.88
CSMD1-213ENST00000523488 FAM169AQ9Y6X4 670 aa9.53□□□□□ -0.88
CSMD1-213ENST00000523488 CPDO75976 1380 aa9.53□□□□□ -0.88
CSMD1-213ENST00000523488 ABCC12Q96J65 1359 aa9.53□□□□□ -0.88
CSMD1-213ENST00000523488 LAMB2P55268 1798 aa9.53□□□□□ -0.88
CSMD1-213ENST00000523488 RBBP6Q7Z6E9 1792 aaKnown RBP9.53□□□□□ -0.88
CSMD1-213ENST00000523488 SURF6O75683 361 aaKnown RBP9.53□□□□□ -0.88
CSMD1-213ENST00000523488 PRLRP16471 622 aa9.53□□□□□ -0.88
CSMD1-213ENST00000523488 PIP4K2BP78356 416 aa9.53□□□□□ -0.88
CSMD1-213ENST00000523488 NEDD9Q14511 834 aa9.53□□□□□ -0.88
CSMD1-213ENST00000523488 BLOC1S2Q6QNY1 142 aa9.53□□□□□ -0.88
CSMD1-213ENST00000523488 TEX11Q8IYF3 940 aa9.53□□□□□ -0.88
CSMD1-213ENST00000523488 FSIP1Q8NA03 581 aa9.53□□□□□ -0.88
CSMD1-213ENST00000523488 BORCS6Q96GS4 357 aa9.53□□□□□ -0.88
CSMD1-213ENST00000523488 BAG1Q99933 345 aaPredicted RBP9.53□□□□□ -0.88
CSMD1-213ENST00000523488 PUF60Q9UHX1 559 aaKnown RBP9.53□□□□□ -0.88
CSMD1-213ENST00000523488 BIN1O00499 593 aa9.52□□□□□ -0.89
CSMD1-213ENST00000523488 TBC1D8BQ0IIM8 1120 aa9.52□□□□□ -0.89
CSMD1-213ENST00000523488 NMIQ13287 307 aaPredicted RBP9.52□□□□□ -0.89
CSMD1-213ENST00000523488 EPHA10Q5JZY3 1008 aa9.52□□□□□ -0.89
CSMD1-213ENST00000523488 SPECC1LQ69YQ0 1117 aa9.52□□□□□ -0.89
CSMD1-213ENST00000523488 SH3RF1Q7Z6J0 888 aa9.52□□□□□ -0.89
CSMD1-213ENST00000523488 MMGT1Q8N4V1 131 aa9.52□□□□□ -0.89
CSMD1-213ENST00000523488 CABS1Q96KC9 395 aa9.52□□□□□ -0.89
CSMD1-213ENST00000523488 PRR36Q9H6K5 1346 aa9.52□□□□□ -0.89
CSMD1-213ENST00000523488 A0A0D9SFI3 127 aa9.52□□□□□ -0.89
CSMD1-213ENST00000523488 JAK2O60674 1132 aa9.52□□□□□ -0.89
CSMD1-213ENST00000523488 TOP1P11387 765 aaKnown RBP9.52□□□□□ -0.89
CSMD1-213ENST00000523488 LMOD1P29536 600 aaPredicted RBP9.52□□□□□ -0.89
CSMD1-213ENST00000523488 RIPK1Q13546 671 aa9.52□□□□□ -0.89
CSMD1-213ENST00000523488 SLC39A14Q15043 492 aa9.52□□□□□ -0.89
CSMD1-213ENST00000523488 SLC5A9Q2M3M2 681 aa9.52□□□□□ -0.89
CSMD1-213ENST00000523488 KDM7AQ6ZMT4 941 aa9.52□□□□□ -0.89
CSMD1-213ENST00000523488 CFAP61Q8NHU2 1237 aa9.52□□□□□ -0.89
CSMD1-213ENST00000523488 TCEANC2Q96MN5 208 aa9.52□□□□□ -0.89
CSMD1-213ENST00000523488 DSCC1Q9BVC3 393 aa9.52□□□□□ -0.89
CSMD1-213ENST00000523488 STK31Q9BXU1 1019 aa9.52□□□□□ -0.89
CSMD1-213ENST00000523488 NF2P35240 595 aa9.52□□□□□ -0.89
CSMD1-213ENST00000523488 STOX1Q6ZVD7 989 aa9.52□□□□□ -0.89
CSMD1-213ENST00000523488 ANKRD24Q8TF21 1146 aa9.52□□□□□ -0.89
CSMD1-213ENST00000523488 JPH2Q9BR39 696 aaPredicted RBP9.52□□□□□ -0.89
CSMD1-213ENST00000523488 MGRN1O60291 552 aa9.51□□□□□ -0.89
CSMD1-213ENST00000523488 WDHD1O75717 1129 aaPredicted RBP9.51□□□□□ -0.89
CSMD1-213ENST00000523488 KIAA0754O94854 1291 aa9.51□□□□□ -0.89
CSMD1-213ENST00000523488 ERCC5P28715 1186 aaPredicted RBP9.51□□□□□ -0.89
CSMD1-213ENST00000523488 XRCC4Q13426 336 aa9.51□□□□□ -0.89
CSMD1-213ENST00000523488 ZNF579Q8NAF0 562 aaKnown RBP9.51□□□□□ -0.89
CSMD1-213ENST00000523488 FAM210AQ96ND0 272 aa9.51□□□□□ -0.89
CSMD1-213ENST00000523488 HOMER3Q9NSC5 361 aa9.51□□□□□ -0.89
CSMD1-213ENST00000523488 TTF2Q9UNY4 1162 aaKnown RBP9.51□□□□□ -0.89
CSMD1-213ENST00000523488 SHTN1A0MZ66 631 aa9.51□□□□□ -0.89
CSMD1-213ENST00000523488 ATP5JP18859 108 aa9.51□□□□□ -0.89
CSMD1-213ENST00000523488 INPP5BP32019 993 aa9.51□□□□□ -0.89
CSMD1-213ENST00000523488 MAP2K1Q02750 393 aaPredicted RBP9.51□□□□□ -0.89
CSMD1-213ENST00000523488 CPLX2Q6PUV4 134 aaKnown RBP9.51□□□□□ -0.89
CSMD1-213ENST00000523488 CRELD2Q6UXH1 353 aaPredicted RBP9.51□□□□□ -0.89
CSMD1-213ENST00000523488 RAD9BQ6WBX8 426 aa9.51□□□□□ -0.89
CSMD1-213ENST00000523488 METTL16Q86W50 562 aaKnown RBP9.51□□□□□ -0.89
CSMD1-213ENST00000523488 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.51□□□□□ -0.89
CSMD1-213ENST00000523488 P3H4Q92791 437 aa9.51□□□□□ -0.89
CSMD1-213ENST00000523488 CICQ96RK0 1608 aaPredicted RBP9.51□□□□□ -0.89
CSMD1-213ENST00000523488 ANKRD18BA2A2Z9 1011 aa9.51□□□□□ -0.89
CSMD1-213ENST00000523488 GOLGA8KD6RF30 607 aa9.51□□□□□ -0.89
CSMD1-213ENST00000523488 NEBLO76041 1014 aa9.51□□□□□ -0.89
CSMD1-213ENST00000523488 RHOXF2BP0C7M4 288 aa9.51□□□□□ -0.89
CSMD1-213ENST00000523488 ATP1A3P13637 1013 aa9.51□□□□□ -0.89
CSMD1-213ENST00000523488 UBASH3AP57075 661 aa9.51□□□□□ -0.89
CSMD1-213ENST00000523488 SARNPP82979 210 aaKnown RBP9.51□□□□□ -0.89
CSMD1-213ENST00000523488 IGSF22Q8N9C0 903 aa9.51□□□□□ -0.89
CSMD1-213ENST00000523488 ITFG2Q969R8 447 aa9.51□□□□□ -0.89
CSMD1-213ENST00000523488 RHOXF2Q9BQY4 288 aa9.51□□□□□ -0.89
CSMD1-213ENST00000523488 U3KPZ7 1027 aaPredicted RBP9.51□□□□□ -0.89
CSMD1-213ENST00000523488 TMEM232C9JQI7 657 aa9.5□□□□□ -0.89
CSMD1-213ENST00000523488 MEFVO15553 781 aaPredicted RBP9.5□□□□□ -0.89
CSMD1-213ENST00000523488 PPFIA3O75145 1194 aa9.5□□□□□ -0.89
CSMD1-213ENST00000523488 ADCY2Q08462 1091 aa9.5□□□□□ -0.89
CSMD1-213ENST00000523488 CUL4BQ13620 913 aa9.5□□□□□ -0.89
CSMD1-213ENST00000523488 NBPF14Q5TI25 921 aa9.5□□□□□ -0.89
CSMD1-213ENST00000523488 FOXP4Q8IVH2 680 aaPredicted RBP9.5□□□□□ -0.89
CSMD1-213ENST00000523488 LTV1Q96GA3 475 aaPredicted RBP9.5□□□□□ -0.89
CSMD1-213ENST00000523488 SHANK3Q9BYB0 1731 aa9.5□□□□□ -0.89
CSMD1-213ENST00000523488 SCN7AQ01118 1682 aa9.5□□□□□ -0.89
CSMD1-213ENST00000523488 ZNF202O95125 648 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms