RNA–Protein interactions for RNA: ENST00000478934.5

VPS52-217, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 2,602 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-217ENST00000478934 ZNF384Q8TF68 577 aa12.47□□□□□ -0.41
VPS52-217ENST00000478934 PCDHB6Q9Y5E3 794 aa12.47□□□□□ -0.41
VPS52-217ENST00000478934 DDX60Q8IY21 1712 aaKnown RBP12.47□□□□□ -0.41
VPS52-217ENST00000478934 PPARAQ07869 468 aa12.47□□□□□ -0.41
VPS52-217ENST00000478934 PTPN14Q15678 1187 aa12.47□□□□□ -0.41
VPS52-217ENST00000478934 RTN1Q16799 776 aa12.47□□□□□ -0.41
VPS52-217ENST00000478934 ZNF827Q17R98 1081 aa12.47□□□□□ -0.41
VPS52-217ENST00000478934 NOM1Q5C9Z4 860 aaKnown RBP12.47□□□□□ -0.41
VPS52-217ENST00000478934 PDILTQ8N807 584 aa12.47□□□□□ -0.41
VPS52-217ENST00000478934 EARS2Q5JPH6 523 aaKnown RBP12.46□□□□□ -0.41
VPS52-217ENST00000478934 RESP18Q5W5W9 173 aa12.46□□□□□ -0.41
VPS52-217ENST00000478934 NOSTRINQ8IVI9 506 aa12.46□□□□□ -0.41
VPS52-217ENST00000478934 ZNF215Q9UL58 517 aaPredicted RBP12.46□□□□□ -0.41
VPS52-217ENST00000478934 ANKRD36CQ5JPF3 1778 aa12.46□□□□□ -0.41
VPS52-217ENST00000478934 SPATA31A1Q5TZJ5 1347 aa12.46□□□□□ -0.41
VPS52-217ENST00000478934 PRR29P0C7W0 189 aa12.46□□□□□ -0.42
VPS52-217ENST00000478934 IFNAR1P17181 557 aa12.46□□□□□ -0.42
VPS52-217ENST00000478934 RBM6P78332 1123 aaKnown RBP12.46□□□□□ -0.42
VPS52-217ENST00000478934 STAG1Q8WVM7 1258 aa12.46□□□□□ -0.42
VPS52-217ENST00000478934 CELF1Q92879 486 aaKnown RBP12.46□□□□□ -0.42
VPS52-217ENST00000478934 DNAJC5Q9H3Z4 198 aa12.46□□□□□ -0.42
VPS52-217ENST00000478934 KCNH3Q9ULD8 1083 aa12.46□□□□□ -0.42
VPS52-217ENST00000478934 PCDHA5Q9Y5H7 936 aa12.46□□□□□ -0.42
VPS52-217ENST00000478934 TAF1P21675 1872 aa12.46□□□□□ -0.42
VPS52-217ENST00000478934 MYH14Q7Z406 1995 aaKnown RBP12.46□□□□□ -0.42
VPS52-217ENST00000478934 DOT1LQ8TEK3 1739 aa12.45□□□□□ -0.42
VPS52-217ENST00000478934 TMEM232C9JQI7 657 aa12.45□□□□□ -0.42
VPS52-217ENST00000478934 WNT7AO00755 349 aa12.45□□□□□ -0.42
VPS52-217ENST00000478934 MMP1P03956 469 aa12.45□□□□□ -0.42
VPS52-217ENST00000478934 FANCCQ00597 558 aa12.45□□□□□ -0.42
VPS52-217ENST00000478934 ZNF654Q8IZM8 581 aa12.45□□□□□ -0.42
VPS52-217ENST00000478934 CRACR2BQ8N4Y2 399 aaPredicted RBP12.45□□□□□ -0.42
VPS52-217ENST00000478934 KRT23Q9C075 422 aa12.45□□□□□ -0.42
VPS52-217ENST00000478934 CABP5Q9NP86 173 aa12.45□□□□□ -0.42
VPS52-217ENST00000478934 PRDM4Q9UKN5 801 aa12.45□□□□□ -0.42
VPS52-217ENST00000478934 COL1A1P02452 1464 aaPredicted RBP12.45□□□□□ -0.42
VPS52-217ENST00000478934 NMT2O60551 498 aa12.45□□□□□ -0.42
VPS52-217ENST00000478934 PPP6R2O75170 966 aa12.45□□□□□ -0.42
VPS52-217ENST00000478934 CCAR2Q8N163 923 aaKnown RBP12.45□□□□□ -0.42
VPS52-217ENST00000478934 FANCBQ8NB91 859 aa12.45□□□□□ -0.42
VPS52-217ENST00000478934 LRRN4CLQ8ND94 238 aa12.45□□□□□ -0.42
VPS52-217ENST00000478934 CNNM3Q8NE01 707 aa12.45□□□□□ -0.42
VPS52-217ENST00000478934 NACAP1Q9BZK3 213 aa12.45□□□□□ -0.42
VPS52-217ENST00000478934 FANCLQ9NW38 375 aa12.45□□□□□ -0.42
VPS52-217ENST00000478934 VPS54Q9P1Q0 977 aa12.45□□□□□ -0.42
VPS52-217ENST00000478934 ECM29Q5VYK3 1845 aa12.45□□□□□ -0.42
VPS52-217ENST00000478934 PLEKHA8P1O95397 391 aa12.44□□□□□ -0.42
VPS52-217ENST00000478934 ZSCAN20P17040 1043 aaPredicted RBP12.44□□□□□ -0.42
VPS52-217ENST00000478934 CASP1P29466 404 aa12.44□□□□□ -0.42
VPS52-217ENST00000478934 E4F1Q66K89 784 aaPredicted RBP12.44□□□□□ -0.42
VPS52-217ENST00000478934 KRBA2Q6ZNG9 492 aa12.44□□□□□ -0.42
VPS52-217ENST00000478934 LINC00116Q8NCU8 138 aa12.44□□□□□ -0.42
VPS52-217ENST00000478934 CNNM2Q9H8M5 875 aa12.44□□□□□ -0.42
VPS52-217ENST00000478934 TFCP2L1Q9NZI6 479 aa12.44□□□□□ -0.42
VPS52-217ENST00000478934 TUBE1Q9UJT0 475 aa12.44□□□□□ -0.42
VPS52-217ENST00000478934 TNKSO95271 1327 aa12.44□□□□□ -0.42
VPS52-217ENST00000478934 MAGEB6P1A0A0J9YX57 407 aa12.44□□□□□ -0.42
VPS52-217ENST00000478934 POLR2DO15514 142 aaKnown RBP12.44□□□□□ -0.42
VPS52-217ENST00000478934 FAM182BQ5T319 152 aa12.44□□□□□ -0.42
VPS52-217ENST00000478934 SERTAD1Q9UHV2 236 aa12.44□□□□□ -0.42
VPS52-217ENST00000478934 LRP5O75197 1615 aa12.44□□□□□ -0.42
VPS52-217ENST00000478934 PNPLA7Q6ZV29 1317 aa12.44□□□□□ -0.42
VPS52-217ENST00000478934 COL16A1Q07092 1604 aaPredicted RBP12.44□□□□□ -0.42
VPS52-217ENST00000478934 ADAMTS3O15072 1205 aa12.43□□□□□ -0.42
VPS52-217ENST00000478934 VEGFAP15692 232 aaPredicted RBP12.43□□□□□ -0.42
VPS52-217ENST00000478934 PARP10Q53GL7 1025 aa12.43□□□□□ -0.42
VPS52-217ENST00000478934 NYAP1Q6ZVC0 841 aa12.43□□□□□ -0.42
VPS52-217ENST00000478934 TRMT44Q8IYL2 757 aaKnown RBP12.43□□□□□ -0.42
VPS52-217ENST00000478934 AK7Q96M32 723 aa12.43□□□□□ -0.42
VPS52-217ENST00000478934 BPIFA3Q9BQP9 254 aa12.43□□□□□ -0.42
VPS52-217ENST00000478934 RIOK1Q9BRS2 568 aaKnown RBP12.43□□□□□ -0.42
VPS52-217ENST00000478934 UBAC1Q9BSL1 405 aa12.43□□□□□ -0.42
VPS52-217ENST00000478934 SRP68Q9UHB9 627 aaKnown RBP12.43□□□□□ -0.42
VPS52-217ENST00000478934 FBXO2Q9UK22 296 aaPredicted RBP12.43□□□□□ -0.42
VPS52-217ENST00000478934 MINPP1Q9UNW1 487 aa12.43□□□□□ -0.42
VPS52-217ENST00000478934 ERICH2A1L162 156 aa12.43□□□□□ -0.42
VPS52-217ENST00000478934 ENAHQ8N8S7 591 aaPredicted RBP12.43□□□□□ -0.42
VPS52-217ENST00000478934 KRI1Q8N9T8 703 aaKnown RBP12.43□□□□□ -0.42
VPS52-217ENST00000478934 FAM84BQ96KN1 310 aaPredicted RBP12.43□□□□□ -0.42
VPS52-217ENST00000478934 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.43□□□□□ -0.42
VPS52-217ENST00000478934 PAXBP1Q9Y5B6 917 aa12.43□□□□□ -0.42
VPS52-217ENST00000478934 CUTAO60888 179 aa12.42□□□□□ -0.42
VPS52-217ENST00000478934 CYP2D6P10635 497 aa12.42□□□□□ -0.42
VPS52-217ENST00000478934 MDM2Q00987 491 aaPredicted RBP12.42□□□□□ -0.42
VPS52-217ENST00000478934 FMR1Q06787 632 aaKnown RBP eCLIP12.42□□□□□ -0.42
VPS52-217ENST00000478934 SEC23AQ15436 765 aa12.42□□□□□ -0.42
VPS52-217ENST00000478934 ELF2Q15723 593 aa12.42□□□□□ -0.42
VPS52-217ENST00000478934 TBC1D9BQ66K14 1250 aa12.42□□□□□ -0.42
VPS52-217ENST00000478934 ANKRD18AQ8IVF6 992 aa12.42□□□□□ -0.42
VPS52-217ENST00000478934 SMAP1Q8IYB5 467 aaPredicted RBP12.42□□□□□ -0.42
VPS52-217ENST00000478934 TRIM22Q8IYM9 498 aa12.42□□□□□ -0.42
VPS52-217ENST00000478934 JMYQ8N9B5 988 aa12.42□□□□□ -0.42
VPS52-217ENST00000478934 OSBPL5Q9H0X9 879 aaPredicted RBP12.42□□□□□ -0.42
VPS52-217ENST00000478934 TMX1Q9H3N1 280 aa12.42□□□□□ -0.42
VPS52-217ENST00000478934 V9GY48 417 aaPredicted RBP12.42□□□□□ -0.42
VPS52-217ENST00000478934 BAZ2BQ9UIF8 2168 aaKnown RBP12.42□□□□□ -0.42
VPS52-217ENST00000478934 GOLGB1Q14789 3259 aaKnown RBP12.42□□□□□ -0.42
VPS52-217ENST00000478934 SERPINC1P01008 464 aa12.42□□□□□ -0.42
VPS52-217ENST00000478934 SART3Q15020 963 aaKnown RBP12.42□□□□□ -0.42
VPS52-217ENST00000478934 FAM47AQ5JRC9 791 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 112.3 ms