RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 CTNND1O60716 968 aaKnown RBP18.84■□□□□ 0.61
HMGA1-206ENST00000478214 GLRX3O76003 335 aaKnown RBP18.84■□□□□ 0.61
HMGA1-206ENST00000478214 UBE3CQ15386 1083 aa18.84■□□□□ 0.61
HMGA1-206ENST00000478214 CCL15Q16663 113 aa18.84■□□□□ 0.61
HMGA1-206ENST00000478214 B4GALNT3Q6L9W6 998 aa18.84■□□□□ 0.61
HMGA1-206ENST00000478214 SCYL3Q8IZE3 742 aa18.84■□□□□ 0.61
HMGA1-206ENST00000478214 KBTBD3Q8NAB2 608 aa18.84■□□□□ 0.61
HMGA1-206ENST00000478214 CRNKL1Q9BZJ0 848 aaKnown RBP18.84■□□□□ 0.61
HMGA1-206ENST00000478214 ARMT1Q9H993 441 aa18.84■□□□□ 0.61
HMGA1-206ENST00000478214 MBD4O95243 580 aa18.83■□□□□ 0.6
HMGA1-206ENST00000478214 RRP1BQ14684 758 aaKnown RBP18.83■□□□□ 0.6
HMGA1-206ENST00000478214 ZSCAN25Q6NSZ9 544 aa18.83■□□□□ 0.6
HMGA1-206ENST00000478214 LNPKQ9C0E8 428 aa18.83■□□□□ 0.6
HMGA1-206ENST00000478214 R3HDMLQ9H3Y0 253 aa18.83■□□□□ 0.6
HMGA1-206ENST00000478214 PICK1Q9NRD5 415 aa18.83■□□□□ 0.6
HMGA1-206ENST00000478214 HERC5Q9UII4 1024 aaKnown RBP18.83■□□□□ 0.6
HMGA1-206ENST00000478214 ALDH1A1P00352 501 aa18.82■□□□□ 0.6
HMGA1-206ENST00000478214 HLA-DOAP06340 250 aa18.82■□□□□ 0.6
HMGA1-206ENST00000478214 PTPRAP18433 802 aa18.82■□□□□ 0.6
HMGA1-206ENST00000478214 SNAPC2Q13487 334 aa18.82■□□□□ 0.6
HMGA1-206ENST00000478214 METTL16Q86W50 562 aaKnown RBP18.82■□□□□ 0.6
HMGA1-206ENST00000478214 FOXP4Q8IVH2 680 aaPredicted RBP18.82■□□□□ 0.6
HMGA1-206ENST00000478214 TNS4Q8IZW8 715 aa18.82■□□□□ 0.6
HMGA1-206ENST00000478214 SDR42E1Q8WUS8 393 aa18.82■□□□□ 0.6
HMGA1-206ENST00000478214 DNAJC18Q9H819 358 aa18.82■□□□□ 0.6
HMGA1-206ENST00000478214 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.82■□□□□ 0.6
HMGA1-206ENST00000478214 STAP2Q9UGK3 403 aa18.82■□□□□ 0.6
HMGA1-206ENST00000478214 ZHX2Q9Y6X8 837 aa18.82■□□□□ 0.6
HMGA1-206ENST00000478214 PRKAB2O43741 272 aa18.81■□□□□ 0.6
HMGA1-206ENST00000478214 CETPP11597 493 aa18.81■□□□□ 0.6
HMGA1-206ENST00000478214 PDE1AP54750 535 aa18.81■□□□□ 0.6
HMGA1-206ENST00000478214 OTUD7BQ6GQQ9 843 aa18.81■□□□□ 0.6
HMGA1-206ENST00000478214 CCDC84Q86UT8 332 aaPredicted RBP18.81■□□□□ 0.6
HMGA1-206ENST00000478214 CRACR2BQ8N4Y2 399 aaPredicted RBP18.81■□□□□ 0.6
HMGA1-206ENST00000478214 CFHR5Q9BXR6 569 aa18.81■□□□□ 0.6
HMGA1-206ENST00000478214 PUS7LQ9H0K6 701 aaKnown RBP18.81■□□□□ 0.6
HMGA1-206ENST00000478214 KCNH4Q9UQ05 1017 aa18.81■□□□□ 0.6
HMGA1-206ENST00000478214 CDK5RAP2Q96SN8 1893 aa18.81■□□□□ 0.6
HMGA1-206ENST00000478214 NUCB1Q02818 461 aa18.8■□□□□ 0.6
HMGA1-206ENST00000478214 FAM43AQ8N2R8 423 aa18.8■□□□□ 0.6
HMGA1-206ENST00000478214 TRIM34Q9BYJ4 488 aa18.8■□□□□ 0.6
HMGA1-206ENST00000478214 FOCADQ5VW36 1801 aa18.79■□□□□ 0.6
HMGA1-206ENST00000478214 RNF113AO15541 343 aaKnown RBP18.79■□□□□ 0.6
HMGA1-206ENST00000478214 CAP2P40123 477 aa18.79■□□□□ 0.6
HMGA1-206ENST00000478214 TTC6Q86TZ1 520 aa18.79■□□□□ 0.6
HMGA1-206ENST00000478214 CHD1LQ86WJ1 897 aa18.79■□□□□ 0.6
HMGA1-206ENST00000478214 DCP1AQ9NPI6 582 aaPredicted RBP18.79■□□□□ 0.6
HMGA1-206ENST00000478214 MCM9Q9NXL9 1143 aa18.79■□□□□ 0.6
HMGA1-206ENST00000478214 SIPA1L1O43166 1804 aa18.79■□□□□ 0.6
HMGA1-206ENST00000478214 BTBD19C9JJ37 291 aa18.78■□□□□ 0.6
HMGA1-206ENST00000478214 GPR25O00155 361 aa18.78■□□□□ 0.6
HMGA1-206ENST00000478214 CXCL11O14625 94 aa18.78■□□□□ 0.6
HMGA1-206ENST00000478214 POLR3DP05423 398 aaPredicted RBP18.78■□□□□ 0.6
HMGA1-206ENST00000478214 PLCD1P51178 756 aa18.78■□□□□ 0.6
HMGA1-206ENST00000478214 JAG1P78504 1218 aa18.78■□□□□ 0.6
HMGA1-206ENST00000478214 EVX2Q03828 476 aa18.78■□□□□ 0.6
HMGA1-206ENST00000478214 CRHR2Q13324 411 aa18.78■□□□□ 0.6
HMGA1-206ENST00000478214 APPBP2Q92624 585 aa18.78■□□□□ 0.6
HMGA1-206ENST00000478214 OSBP2Q969R2 916 aa18.78■□□□□ 0.6
HMGA1-206ENST00000478214 AFG3L2Q9Y4W6 797 aa18.78■□□□□ 0.6
HMGA1-206ENST00000478214 LAMB1P07942 1786 aa18.78■□□□□ 0.6
HMGA1-206ENST00000478214 CASP8AP2Q9UKL3 1982 aa18.77■□□□□ 0.6
HMGA1-206ENST00000478214 ZFYP08048 801 aaPredicted RBP18.77■□□□□ 0.6
HMGA1-206ENST00000478214 CYP2D6P10635 497 aa18.77■□□□□ 0.6
HMGA1-206ENST00000478214 MOGSQ13724 837 aa18.77■□□□□ 0.6
HMGA1-206ENST00000478214 SHROOM1Q2M3G4 852 aaPredicted RBP18.77■□□□□ 0.6
HMGA1-206ENST00000478214 ZNF296Q8WUU4 475 aaPredicted RBP18.77■□□□□ 0.6
HMGA1-206ENST00000478214 FSD1Q9BTV5 496 aa18.77■□□□□ 0.6
HMGA1-206ENST00000478214 EHD4Q9H223 541 aa18.77■□□□□ 0.6
HMGA1-206ENST00000478214 SERPINB13Q9UIV8 391 aa18.77■□□□□ 0.6
HMGA1-206ENST00000478214 TRIM75PA6NK02 468 aa18.76■□□□□ 0.59
HMGA1-206ENST00000478214 GDF11O95390 407 aa18.76■□□□□ 0.59
HMGA1-206ENST00000478214 TAF1CQ15572 869 aaPredicted RBP18.76■□□□□ 0.59
HMGA1-206ENST00000478214 NOM1Q5C9Z4 860 aaKnown RBP18.76■□□□□ 0.59
HMGA1-206ENST00000478214 STRBPQ96SI9 672 aaKnown RBP18.76■□□□□ 0.59
HMGA1-206ENST00000478214 ATP8A2Q9NTI2 1148 aa18.76■□□□□ 0.59
HMGA1-206ENST00000478214 SLC4A4Q9Y6R1 1079 aa18.76■□□□□ 0.59
HMGA1-206ENST00000478214 A0A0G2JLL6 359 aaPredicted RBP18.75■□□□□ 0.59
HMGA1-206ENST00000478214 LRRFIP1Q32MZ4 808 aaKnown RBP18.75■□□□□ 0.59
HMGA1-206ENST00000478214 TATDN1Q6P1N9 297 aa18.75■□□□□ 0.59
HMGA1-206ENST00000478214 PRRT2Q7Z6L0 340 aaPredicted RBP18.75■□□□□ 0.59
HMGA1-206ENST00000478214 PLEKHM2Q8IWE5 1019 aa18.75■□□□□ 0.59
HMGA1-206ENST00000478214 DOCK1Q14185 1865 aa18.75■□□□□ 0.59
HMGA1-206ENST00000478214 MYH1P12882 1939 aa18.74■□□□□ 0.59
HMGA1-206ENST00000478214 USP17L5A8MUK1 530 aa18.74■□□□□ 0.59
HMGA1-206ENST00000478214 M0R2C6 588 aa18.74■□□□□ 0.59
HMGA1-206ENST00000478214 FKTNO75072 461 aa18.74■□□□□ 0.59
HMGA1-206ENST00000478214 ASNSP08243 561 aa18.74■□□□□ 0.59
HMGA1-206ENST00000478214 GABPAQ06546 454 aa18.74■□□□□ 0.59
HMGA1-206ENST00000478214 SPP2Q13103 211 aa18.74■□□□□ 0.59
HMGA1-206ENST00000478214 ANKRD23Q86SG2 305 aa18.74■□□□□ 0.59
HMGA1-206ENST00000478214 ZNF280CQ8ND82 737 aa18.74■□□□□ 0.59
HMGA1-206ENST00000478214 SEC62Q99442 399 aaKnown RBP18.74■□□□□ 0.59
HMGA1-206ENST00000478214 ZFYVE28Q9HCC9 887 aa18.74■□□□□ 0.59
HMGA1-206ENST00000478214 ZCCHC17Q9NP64 241 aaKnown RBP18.74■□□□□ 0.59
HMGA1-206ENST00000478214 ZBTB21Q9ULJ3 1066 aa18.74■□□□□ 0.59
HMGA1-206ENST00000478214 MYH7P12883 1935 aa18.74■□□□□ 0.59
HMGA1-206ENST00000478214 DDX60LQ5H9U9 1706 aaKnown RBP18.74■□□□□ 0.59
HMGA1-206ENST00000478214 CYP2D7A0A087X1C5 515 aa18.73■□□□□ 0.59
HMGA1-206ENST00000478214 USP17L12C9JPN9 530 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms