RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 PHF20L1A8MW92 1017 aa17.16■□□□□ 0.34
VAMP4-203ENST00000474047 IRF6O14896 467 aa17.16■□□□□ 0.34
VAMP4-203ENST00000474047 GLRX3O76003 335 aaKnown RBP17.16■□□□□ 0.34
VAMP4-203ENST00000474047 SLC4A8Q2Y0W8 1093 aa17.16■□□□□ 0.34
VAMP4-203ENST00000474047 LRRFIP1Q32MZ4 808 aaKnown RBP17.16■□□□□ 0.34
VAMP4-203ENST00000474047 FOXP4Q8IVH2 680 aaPredicted RBP17.16■□□□□ 0.34
VAMP4-203ENST00000474047 OTUD7AQ8TE49 926 aaPredicted RBP17.16■□□□□ 0.34
VAMP4-203ENST00000474047 PCDH10Q9P2E7 1040 aa17.16■□□□□ 0.34
VAMP4-203ENST00000474047 TCRBV5S4A2TA0A5A2 114 aa17.16■□□□□ 0.34
VAMP4-203ENST00000474047 SLURP2P0DP57 97 aa17.16■□□□□ 0.34
VAMP4-203ENST00000474047 UBE3CQ15386 1083 aa17.16■□□□□ 0.34
VAMP4-203ENST00000474047 RIOK1Q9BRS2 568 aaKnown RBP17.16■□□□□ 0.34
VAMP4-203ENST00000474047 POLR3DP05423 398 aaPredicted RBP17.15■□□□□ 0.34
VAMP4-203ENST00000474047 TTC6Q86TZ1 520 aa17.15■□□□□ 0.34
VAMP4-203ENST00000474047 KBTBD3Q8NAB2 608 aa17.15■□□□□ 0.34
VAMP4-203ENST00000474047 MS4A4AQ96JQ5 239 aa17.15■□□□□ 0.34
VAMP4-203ENST00000474047 ARMT1Q9H993 441 aa17.15■□□□□ 0.34
VAMP4-203ENST00000474047 ZHX2Q9Y6X8 837 aa17.15■□□□□ 0.34
VAMP4-203ENST00000474047 TESPA1A2RU30 521 aaPredicted RBP17.14■□□□□ 0.33
VAMP4-203ENST00000474047 IGF2BP3O00425 579 aaKnown RBP eCLIP17.14■□□□□ 0.33
VAMP4-203ENST00000474047 MBD4O95243 580 aa17.14■□□□□ 0.33
VAMP4-203ENST00000474047 IGHDP01880 384 aa17.14■□□□□ 0.33
VAMP4-203ENST00000474047 SLFNL1Q499Z3 407 aa17.14■□□□□ 0.33
VAMP4-203ENST00000474047 LCORLQ8N3X6 602 aa17.14■□□□□ 0.33
VAMP4-203ENST00000474047 BRI3BPQ8WY22 251 aa17.14■□□□□ 0.33
VAMP4-203ENST00000474047 DDRGK1Q96HY6 314 aa17.14■□□□□ 0.33
VAMP4-203ENST00000474047 LNPKQ9C0E8 428 aa17.14■□□□□ 0.33
VAMP4-203ENST00000474047 CASP8AP2Q9UKL3 1982 aa17.14■□□□□ 0.33
VAMP4-203ENST00000474047 CDK5RAP2Q96SN8 1893 aa17.14■□□□□ 0.33
VAMP4-203ENST00000474047 PTPRAP18433 802 aa17.13■□□□□ 0.33
VAMP4-203ENST00000474047 MCM9Q9NXL9 1143 aa17.13■□□□□ 0.33
VAMP4-203ENST00000474047 FOCADQ5VW36 1801 aa17.13■□□□□ 0.33
VAMP4-203ENST00000474047 ZFYP08048 801 aaPredicted RBP17.13■□□□□ 0.33
VAMP4-203ENST00000474047 SMC5Q8IY18 1101 aa17.13■□□□□ 0.33
VAMP4-203ENST00000474047 PTPN18Q99952 460 aa17.13■□□□□ 0.33
VAMP4-203ENST00000474047 FSD1Q9BTV5 496 aa17.13■□□□□ 0.33
VAMP4-203ENST00000474047 MYH1P12882 1939 aa17.12■□□□□ 0.33
VAMP4-203ENST00000474047 MYH7P12883 1935 aa17.12■□□□□ 0.33
VAMP4-203ENST00000474047 RNF113AO15541 343 aaKnown RBP17.12■□□□□ 0.33
VAMP4-203ENST00000474047 CAP2P40123 477 aa17.12■□□□□ 0.33
VAMP4-203ENST00000474047 AMOTL1Q8IY63 956 aa17.12■□□□□ 0.33
VAMP4-203ENST00000474047 PI4K2BQ8TCG2 481 aa17.12■□□□□ 0.33
VAMP4-203ENST00000474047 SDR42E1Q8WUS8 393 aa17.12■□□□□ 0.33
VAMP4-203ENST00000474047 GPR25O00155 361 aa17.11■□□□□ 0.33
VAMP4-203ENST00000474047 CXCL11O14625 94 aa17.11■□□□□ 0.33
VAMP4-203ENST00000474047 TAF1CQ15572 869 aaPredicted RBP17.11■□□□□ 0.33
VAMP4-203ENST00000474047 CHD1LQ86WJ1 897 aa17.11■□□□□ 0.33
VAMP4-203ENST00000474047 ZFYVE28Q9HCC9 887 aa17.11■□□□□ 0.33
VAMP4-203ENST00000474047 SERPINB13Q9UIV8 391 aa17.11■□□□□ 0.33
VAMP4-203ENST00000474047 SLC4A4Q9Y6R1 1079 aa17.11■□□□□ 0.33
VAMP4-203ENST00000474047 CHGBP05060 677 aa17.1■□□□□ 0.33
VAMP4-203ENST00000474047 PDE1AP54750 535 aa17.1■□□□□ 0.33
VAMP4-203ENST00000474047 CFHR5Q9BXR6 569 aa17.1■□□□□ 0.33
VAMP4-203ENST00000474047 ATP8A2Q9NTI2 1148 aa17.1■□□□□ 0.33
VAMP4-203ENST00000474047 KCNH4Q9UQ05 1017 aa17.1■□□□□ 0.33
VAMP4-203ENST00000474047 DOCK1Q14185 1865 aa17.1■□□□□ 0.33
VAMP4-203ENST00000474047 TRIM75PA6NK02 468 aa17.1■□□□□ 0.33
VAMP4-203ENST00000474047 PRKAB2O43741 272 aa17.1■□□□□ 0.33
VAMP4-203ENST00000474047 FKTNO75072 461 aa17.1■□□□□ 0.33
VAMP4-203ENST00000474047 CRHR2Q13324 411 aa17.1■□□□□ 0.33
VAMP4-203ENST00000474047 GADL1Q6ZQY3 521 aa17.1■□□□□ 0.33
VAMP4-203ENST00000474047 FAM43AQ8N2R8 423 aa17.1■□□□□ 0.33
VAMP4-203ENST00000474047 ZNF296Q8WUU4 475 aaPredicted RBP17.1■□□□□ 0.33
VAMP4-203ENST00000474047 APPBP2Q92624 585 aa17.1■□□□□ 0.33
VAMP4-203ENST00000474047 PUS7LQ9H0K6 701 aaKnown RBP17.1■□□□□ 0.33
VAMP4-203ENST00000474047 AS3MTQ9HBK9 375 aa17.1■□□□□ 0.33
VAMP4-203ENST00000474047 DCP1AQ9NPI6 582 aaPredicted RBP17.1■□□□□ 0.33
VAMP4-203ENST00000474047 STAP2Q9UGK3 403 aa17.1■□□□□ 0.33
VAMP4-203ENST00000474047 AFG3L2Q9Y4W6 797 aa17.1■□□□□ 0.33
VAMP4-203ENST00000474047 USP17L5A8MUK1 530 aa17.09■□□□□ 0.33
VAMP4-203ENST00000474047 BTBD19C9JJ37 291 aa17.09■□□□□ 0.33
VAMP4-203ENST00000474047 ASNSP08243 561 aa17.09■□□□□ 0.33
VAMP4-203ENST00000474047 NUCB1Q02818 461 aa17.09■□□□□ 0.33
VAMP4-203ENST00000474047 DGKZQ13574 1117 aa17.09■□□□□ 0.33
VAMP4-203ENST00000474047 FASTKD5Q7L8L6 764 aaKnown RBP17.09■□□□□ 0.33
VAMP4-203ENST00000474047 METTL16Q86W50 562 aaKnown RBP17.09■□□□□ 0.33
VAMP4-203ENST00000474047 TBC1D2Q9BYX2 928 aa17.09■□□□□ 0.33
VAMP4-203ENST00000474047 EHD4Q9H223 541 aa17.09■□□□□ 0.33
VAMP4-203ENST00000474047 R3HDMLQ9H3Y0 253 aa17.09■□□□□ 0.33
VAMP4-203ENST00000474047 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.09■□□□□ 0.33
VAMP4-203ENST00000474047 LAMB1P07942 1786 aa17.09■□□□□ 0.33
VAMP4-203ENST00000474047 GDF11O95390 407 aa17.08■□□□□ 0.32
VAMP4-203ENST00000474047 NOM1Q5C9Z4 860 aaKnown RBP17.08■□□□□ 0.32
VAMP4-203ENST00000474047 CCDC84Q86UT8 332 aaPredicted RBP17.08■□□□□ 0.32
VAMP4-203ENST00000474047 EVI5LQ96CN4 794 aa17.08■□□□□ 0.32
VAMP4-203ENST00000474047 ZCCHC17Q9NP64 241 aaKnown RBP17.08■□□□□ 0.32
VAMP4-203ENST00000474047 SALL3Q9BXA9 1300 aa17.08■□□□□ 0.32
VAMP4-203ENST00000474047 TRIM6-TRIM34B2RNG4 842 aa17.07■□□□□ 0.32
VAMP4-203ENST00000474047 PDHXO00330 501 aa17.07■□□□□ 0.32
VAMP4-203ENST00000474047 PLCD1P51178 756 aa17.07■□□□□ 0.32
VAMP4-203ENST00000474047 SPP2Q13103 211 aa17.07■□□□□ 0.32
VAMP4-203ENST00000474047 RRP1BQ14684 758 aaKnown RBP17.07■□□□□ 0.32
VAMP4-203ENST00000474047 ANKRD23Q86SG2 305 aa17.07■□□□□ 0.32
VAMP4-203ENST00000474047 ZNF280CQ8ND82 737 aa17.07■□□□□ 0.32
VAMP4-203ENST00000474047 DNAJC18Q9H819 358 aa17.07■□□□□ 0.32
VAMP4-203ENST00000474047 GINM1Q9NU53 330 aa17.07■□□□□ 0.32
VAMP4-203ENST00000474047 NAV1Q8NEY1 1877 aa17.07■□□□□ 0.32
VAMP4-203ENST00000474047 APPP05067 770 aa17.07■□□□□ 0.32
VAMP4-203ENST00000474047 CERKLQ49MI3 558 aaPredicted RBP17.07■□□□□ 0.32
VAMP4-203ENST00000474047 OSBP2Q969R2 916 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms