RNA–Protein interactions for RNA: ENST00000472217.1

USF1-204, Transcript of upstream transcription factor 1, humanhuman

TSL 2

Gene USF1, Length 1,097 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-204ENST00000472217 ANTXR1Q9H6X2 564 aa11.02□□□□□ -0.65
USF1-204ENST00000472217 AFG3L2Q9Y4W6 797 aa11.02□□□□□ -0.65
USF1-204ENST00000472217 FLT1P17948 1338 aa11.02□□□□□ -0.65
USF1-204ENST00000472217 ADGRA2Q96PE1 1338 aa11.02□□□□□ -0.65
USF1-204ENST00000472217 A0A0G2JLL6 359 aaPredicted RBP11.01□□□□□ -0.65
USF1-204ENST00000472217 TRIM75PA6NK02 468 aa11.01□□□□□ -0.65
USF1-204ENST00000472217 CYP7A1P22680 504 aa11.01□□□□□ -0.65
USF1-204ENST00000472217 DYNLL1P63167 89 aaKnown RBP11.01□□□□□ -0.65
USF1-204ENST00000472217 LACTBP83111 547 aaPredicted RBP11.01□□□□□ -0.65
USF1-204ENST00000472217 C17orf99Q6UX52 265 aa11.01□□□□□ -0.65
USF1-204ENST00000472217 PRRT2Q7Z6L0 340 aaPredicted RBP11.01□□□□□ -0.65
USF1-204ENST00000472217 MAPKAPK5Q8IW41 473 aa11.01□□□□□ -0.65
USF1-204ENST00000472217 KIF1BPQ96EK5 621 aa11.01□□□□□ -0.65
USF1-204ENST00000472217 ARHGAP39Q9C0H5 1083 aa11.01□□□□□ -0.65
USF1-204ENST00000472217 DHX36Q9H2U1 1008 aaKnown RBP11.01□□□□□ -0.65
USF1-204ENST00000472217 CHMP4BQ9H444 224 aaKnown RBP11.01□□□□□ -0.65
USF1-204ENST00000472217 CPA4Q9UI42 421 aa11.01□□□□□ -0.65
USF1-204ENST00000472217 CYP2C8P10632 490 aa11□□□□□ -0.65
USF1-204ENST00000472217 CAP2P40123 477 aa11□□□□□ -0.65
USF1-204ENST00000472217 PDE3AQ14432 1141 aa11□□□□□ -0.65
USF1-204ENST00000472217 RRP1BQ14684 758 aaKnown RBP11□□□□□ -0.65
USF1-204ENST00000472217 ARHGEF6Q15052 776 aa11□□□□□ -0.65
USF1-204ENST00000472217 GADL1Q6ZQY3 521 aa11□□□□□ -0.65
USF1-204ENST00000472217 FASTKD5Q7L8L6 764 aaKnown RBP11□□□□□ -0.65
USF1-204ENST00000472217 CLASRPQ8N2M8 674 aaKnown RBP11□□□□□ -0.65
USF1-204ENST00000472217 MAGEB6Q8N7X4 407 aa11□□□□□ -0.65
USF1-204ENST00000472217 MIGA1Q8NAN2 632 aa11□□□□□ -0.65
USF1-204ENST00000472217 BCL11AQ9H165 835 aa11□□□□□ -0.65
USF1-204ENST00000472217 DNAJC18Q9H819 358 aa11□□□□□ -0.65
USF1-204ENST00000472217 HERC5Q9UII4 1024 aaKnown RBP11□□□□□ -0.65
USF1-204ENST00000472217 LOC285556D6RIA3 1793 aa11□□□□□ -0.65
USF1-204ENST00000472217 RBBP6Q7Z6E9 1792 aaKnown RBP11□□□□□ -0.65
USF1-204ENST00000472217 DDX60LQ5H9U9 1706 aaKnown RBP10.99□□□□□ -0.65
USF1-204ENST00000472217 RAB11FIP3O75154 756 aa10.99□□□□□ -0.65
USF1-204ENST00000472217 ECM2O94769 699 aaPredicted RBP10.99□□□□□ -0.65
USF1-204ENST00000472217 IFIT2P09913 472 aaKnown RBP10.99□□□□□ -0.65
USF1-204ENST00000472217 MAP3K12Q12852 859 aa10.99□□□□□ -0.65
USF1-204ENST00000472217 KIF22Q14807 665 aa10.99□□□□□ -0.65
USF1-204ENST00000472217 ARMC5Q96C12 935 aa10.99□□□□□ -0.65
USF1-204ENST00000472217 PARK7Q99497 189 aaKnown RBP10.99□□□□□ -0.65
USF1-204ENST00000472217 PI4KBQ9UBF8 816 aa10.99□□□□□ -0.65
USF1-204ENST00000472217 SAP30BPQ9UHR5 308 aaKnown RBP10.99□□□□□ -0.65
USF1-204ENST00000472217 PALD1Q9ULE6 856 aa10.99□□□□□ -0.65
USF1-204ENST00000472217 PTCH2Q9Y6C5 1203 aa10.99□□□□□ -0.65
USF1-204ENST00000472217 CTGFP29279 349 aa10.98□□□□□ -0.65
USF1-204ENST00000472217 SLC4A8Q2Y0W8 1093 aa10.98□□□□□ -0.65
USF1-204ENST00000472217 METTL16Q86W50 562 aaKnown RBP10.98□□□□□ -0.65
USF1-204ENST00000472217 CERS3Q8IU89 383 aa10.98□□□□□ -0.65
USF1-204ENST00000472217 TRIM47Q96LD4 638 aa10.98□□□□□ -0.65
USF1-204ENST00000472217 DNAJC2Q99543 621 aaKnown RBP10.98□□□□□ -0.65
USF1-204ENST00000472217 SLC45A1Q9Y2W3 748 aa10.98□□□□□ -0.65
USF1-204ENST00000472217 MYH1P12882 1939 aa10.97□□□□□ -0.65
USF1-204ENST00000472217 POTEFA5A3E0 1075 aa10.97□□□□□ -0.65
USF1-204ENST00000472217 USP17L5A8MUK1 530 aa10.97□□□□□ -0.65
USF1-204ENST00000472217 GOLIM4O00461 696 aa10.97□□□□□ -0.65
USF1-204ENST00000472217 GNRH1P01148 92 aa10.97□□□□□ -0.65
USF1-204ENST00000472217 BCRP11274 1271 aa10.97□□□□□ -0.65
USF1-204ENST00000472217 PSMC4P43686 418 aa10.97□□□□□ -0.65
USF1-204ENST00000472217 JAG1P78504 1218 aa10.97□□□□□ -0.65
USF1-204ENST00000472217 SPP2Q13103 211 aa10.97□□□□□ -0.65
USF1-204ENST00000472217 TTF1Q15361 905 aaPredicted RBP10.97□□□□□ -0.65
USF1-204ENST00000472217 SLC9C1Q4G0N8 1177 aa10.97□□□□□ -0.65
USF1-204ENST00000472217 TREML2Q5T2D2 321 aa10.97□□□□□ -0.65
USF1-204ENST00000472217 TMED8Q6PL24 325 aaPredicted RBP10.97□□□□□ -0.65
USF1-204ENST00000472217 FOXP4Q8IVH2 680 aaPredicted RBP10.97□□□□□ -0.65
USF1-204ENST00000472217 CRACR2BQ8N4Y2 399 aaPredicted RBP10.97□□□□□ -0.65
USF1-204ENST00000472217 PROCA1Q8NCQ7 364 aaPredicted RBP10.97□□□□□ -0.65
USF1-204ENST00000472217 ZNF280CQ8ND82 737 aa10.97□□□□□ -0.65
USF1-204ENST00000472217 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.97□□□□□ -0.65
USF1-204ENST00000472217 EDC3Q96F86 508 aaKnown RBP10.97□□□□□ -0.65
USF1-204ENST00000472217 ZNF333Q96JL9 665 aa10.97□□□□□ -0.65
USF1-204ENST00000472217 RIOK1Q9BRS2 568 aaKnown RBP10.97□□□□□ -0.65
USF1-204ENST00000472217 TRIM34Q9BYJ4 488 aa10.97□□□□□ -0.65
USF1-204ENST00000472217 TBC1D2Q9BYX2 928 aa10.97□□□□□ -0.65
USF1-204ENST00000472217 AGTPBP1Q9UPW5 1226 aa10.97□□□□□ -0.65
USF1-204ENST00000472217 NAV1Q8NEY1 1877 aa10.97□□□□□ -0.65
USF1-204ENST00000472217 MGAMO43451 1857 aa10.96□□□□□ -0.65
USF1-204ENST00000472217 GDF11O95390 407 aa10.96□□□□□ -0.65
USF1-204ENST00000472217 HLA-DOAP06340 250 aa10.96□□□□□ -0.65
USF1-204ENST00000472217 PDE6AP16499 860 aa10.96□□□□□ -0.65
USF1-204ENST00000472217 USP5P45974 858 aa10.96□□□□□ -0.65
USF1-204ENST00000472217 HMGCS2P54868 508 aa10.96□□□□□ -0.65
USF1-204ENST00000472217 SHROOM1Q2M3G4 852 aaPredicted RBP10.96□□□□□ -0.65
USF1-204ENST00000472217 SLC9C2Q5TAH2 1124 aa10.96□□□□□ -0.65
USF1-204ENST00000472217 SMCR8Q8TEV9 937 aaPredicted RBP10.96□□□□□ -0.65
USF1-204ENST00000472217 LRRCC1Q9C099 1032 aa10.96□□□□□ -0.65
USF1-204ENST00000472217 SRRDQ9UH36 339 aa10.96□□□□□ -0.65
USF1-204ENST00000472217 ZNF532Q9HCE3 1301 aa10.95□□□□□ -0.66
USF1-204ENST00000472217 TCRBV5S4A2TA0A5A2 114 aa10.95□□□□□ -0.66
USF1-204ENST00000472217 SMARCA5O60264 1052 aaPredicted RBP10.95□□□□□ -0.66
USF1-204ENST00000472217 FMNL1O95466 1100 aaPredicted RBP10.95□□□□□ -0.66
USF1-204ENST00000472217 ASNSP08243 561 aa10.95□□□□□ -0.66
USF1-204ENST00000472217 ATP5JP18859 108 aa10.95□□□□□ -0.66
USF1-204ENST00000472217 OSBPP22059 807 aa10.95□□□□□ -0.66
USF1-204ENST00000472217 PRMT2P55345 433 aa10.95□□□□□ -0.66
USF1-204ENST00000472217 SH3D19Q5HYK7 790 aa10.95□□□□□ -0.66
USF1-204ENST00000472217 NBPF11Q86T75 865 aa10.95□□□□□ -0.66
USF1-204ENST00000472217 SH3TC2Q8TF17 1288 aa10.95□□□□□ -0.66
USF1-204ENST00000472217 BOLA2Q9H3K6 86 aa10.95□□□□□ -0.66
USF1-204ENST00000472217 AS3MTQ9HBK9 375 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms