RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 POLR2AP24928 1970 aaKnown RBP11.12□□□□□ -0.63
HDAC3-205ENST00000469550 C6orf229H3BNL8 230 aa11.11□□□□□ -0.63
HDAC3-205ENST00000469550 PAXIP1Q6ZW49 1069 aaPredicted RBP11.11□□□□□ -0.63
HDAC3-205ENST00000469550 DHX40Q8IX18 779 aaKnown RBP11.11□□□□□ -0.63
HDAC3-205ENST00000469550 SMARCC2Q8TAQ2 1214 aa11.11□□□□□ -0.63
HDAC3-205ENST00000469550 BRF1Q92994 677 aa11.11□□□□□ -0.63
HDAC3-205ENST00000469550 TIGD1Q96MW7 591 aa11.11□□□□□ -0.63
HDAC3-205ENST00000469550 METTL22Q9BUU2 404 aaPredicted RBP11.11□□□□□ -0.63
HDAC3-205ENST00000469550 NAT10Q9H0A0 1025 aaKnown RBP11.11□□□□□ -0.63
HDAC3-205ENST00000469550 TMEM51Q9NW97 253 aa11.11□□□□□ -0.63
HDAC3-205ENST00000469550 UTYO14607 1347 aa11.11□□□□□ -0.63
HDAC3-205ENST00000469550 PDE8AO60658 829 aa11.1□□□□□ -0.63
HDAC3-205ENST00000469550 VIL1P09327 827 aaKnown RBP11.1□□□□□ -0.63
HDAC3-205ENST00000469550 SLC20A2Q08357 652 aa11.1□□□□□ -0.63
HDAC3-205ENST00000469550 ARID5BQ14865 1188 aa11.1□□□□□ -0.63
HDAC3-205ENST00000469550 ELF2Q15723 593 aa11.1□□□□□ -0.63
HDAC3-205ENST00000469550 CCDC152Q4G0S7 254 aa11.1□□□□□ -0.63
HDAC3-205ENST00000469550 CEP57L1Q8IYX8 460 aa11.1□□□□□ -0.63
HDAC3-205ENST00000469550 ENGASEQ8NFI3 743 aa11.1□□□□□ -0.63
HDAC3-205ENST00000469550 ABHD8Q96I13 439 aa11.1□□□□□ -0.63
HDAC3-205ENST00000469550 BPIFA3Q9BQP9 254 aa11.1□□□□□ -0.63
HDAC3-205ENST00000469550 CWC25Q9NXE8 425 aaPredicted RBP11.1□□□□□ -0.63
HDAC3-205ENST00000469550 ZBTB12Q9Y330 459 aaPredicted RBP11.1□□□□□ -0.63
HDAC3-205ENST00000469550 RFX7Q2KHR2 1363 aa11.1□□□□□ -0.63
HDAC3-205ENST00000469550 A0A0D9SFI3 127 aa11.1□□□□□ -0.63
HDAC3-205ENST00000469550 H3BQV1 296 aa11.1□□□□□ -0.63
HDAC3-205ENST00000469550 AOC2O75106 756 aa11.1□□□□□ -0.63
HDAC3-205ENST00000469550 TAF5LO75529 589 aa11.1□□□□□ -0.63
HDAC3-205ENST00000469550 DDX58O95786 925 aaKnown RBP11.1□□□□□ -0.63
HDAC3-205ENST00000469550 SNW1Q13573 536 aaKnown RBP11.1□□□□□ -0.63
HDAC3-205ENST00000469550 CCDC73Q6ZRK6 1079 aa11.1□□□□□ -0.63
HDAC3-205ENST00000469550 CCAR1Q8IX12 1150 aaKnown RBP11.1□□□□□ -0.63
HDAC3-205ENST00000469550 CCDC150Q8NCX0 1101 aa11.1□□□□□ -0.63
HDAC3-205ENST00000469550 EAF2Q96CJ1 260 aaPredicted RBP11.1□□□□□ -0.63
HDAC3-205ENST00000469550 MYD88Q99836 296 aa11.1□□□□□ -0.63
HDAC3-205ENST00000469550 RIMBP2O15034 1052 aa11.09□□□□□ -0.63
HDAC3-205ENST00000469550 SASH1O94885 1247 aa11.09□□□□□ -0.63
HDAC3-205ENST00000469550 ZNF280AP59817 542 aaPredicted RBP11.09□□□□□ -0.63
HDAC3-205ENST00000469550 FAM160A1Q05DH4 1040 aa11.09□□□□□ -0.63
HDAC3-205ENST00000469550 NOGQ13253 232 aa11.09□□□□□ -0.63
HDAC3-205ENST00000469550 G3BP1Q13283 466 aaKnown RBP eCLIP11.09□□□□□ -0.63
HDAC3-205ENST00000469550 COL9A3Q14050 684 aaPredicted RBP11.09□□□□□ -0.63
HDAC3-205ENST00000469550 SAMD7Q7Z3H4 446 aa11.09□□□□□ -0.63
HDAC3-205ENST00000469550 ZNF396Q96N95 335 aaPredicted RBP11.09□□□□□ -0.63
HDAC3-205ENST00000469550 NEK1Q96PY6 1258 aa11.09□□□□□ -0.63
HDAC3-205ENST00000469550 FSD1Q9BTV5 496 aa11.09□□□□□ -0.63
HDAC3-205ENST00000469550 SEC31BQ9NQW1 1179 aa11.09□□□□□ -0.63
HDAC3-205ENST00000469550 ZNF446Q9NWS9 450 aa11.09□□□□□ -0.63
HDAC3-205ENST00000469550 C9orf78Q9NZ63 289 aaPredicted RBP11.09□□□□□ -0.63
HDAC3-205ENST00000469550 GGA1Q9UJY5 639 aa11.09□□□□□ -0.63
HDAC3-205ENST00000469550 SPEF2Q9C093 1822 aa11.09□□□□□ -0.63
HDAC3-205ENST00000469550 JAK2O60674 1132 aa11.08□□□□□ -0.64
HDAC3-205ENST00000469550 KINO60870 393 aaKnown RBP11.08□□□□□ -0.64
HDAC3-205ENST00000469550 UFL1O94874 794 aa11.08□□□□□ -0.64
HDAC3-205ENST00000469550 EGFRP00533 1210 aa11.08□□□□□ -0.64
HDAC3-205ENST00000469550 KSR2Q6VAB6 950 aa11.08□□□□□ -0.64
HDAC3-205ENST00000469550 FILIP1Q7Z7B0 1213 aa11.08□□□□□ -0.64
HDAC3-205ENST00000469550 AGBL3Q8NEM8 1001 aa11.08□□□□□ -0.64
HDAC3-205ENST00000469550 BBXQ8WY36 941 aaPredicted RBP11.08□□□□□ -0.64
HDAC3-205ENST00000469550 CHMP4CQ96CF2 233 aa11.08□□□□□ -0.64
HDAC3-205ENST00000469550 TCEANC2Q96MN5 208 aa11.08□□□□□ -0.64
HDAC3-205ENST00000469550 ZC3H12CQ9C0D7 883 aaKnown RBP11.08□□□□□ -0.64
HDAC3-205ENST00000469550 U3KPZ7 1027 aaPredicted RBP11.08□□□□□ -0.64
HDAC3-205ENST00000469550 XDHP47989 1333 aa11.08□□□□□ -0.64
HDAC3-205ENST00000469550 PAPPA2Q9BXP8 1791 aa11.08□□□□□ -0.64
HDAC3-205ENST00000469550 CCP110O43303 1012 aa11.08□□□□□ -0.64
HDAC3-205ENST00000469550 ATP8B1O43520 1251 aa11.08□□□□□ -0.64
HDAC3-205ENST00000469550 PFKFB2O60825 505 aa11.08□□□□□ -0.64
HDAC3-205ENST00000469550 CYP2C19P33261 490 aa11.08□□□□□ -0.64
HDAC3-205ENST00000469550 DOK7Q18PE1 504 aa11.08□□□□□ -0.64
HDAC3-205ENST00000469550 KIF4BQ2VIQ3 1234 aa11.08□□□□□ -0.64
HDAC3-205ENST00000469550 TBC1D10BQ4KMP7 808 aaPredicted RBP11.08□□□□□ -0.64
HDAC3-205ENST00000469550 KRT26Q7Z3Y9 468 aa11.08□□□□□ -0.64
HDAC3-205ENST00000469550 NBPF11Q86T75 865 aa11.08□□□□□ -0.64
HDAC3-205ENST00000469550 KCNQ5Q9NR82 932 aa11.08□□□□□ -0.64
HDAC3-205ENST00000469550 PA2G4Q9UQ80 394 aaKnown RBP11.08□□□□□ -0.64
HDAC3-205ENST00000469550 TULP2O00295 520 aa11.07□□□□□ -0.64
HDAC3-205ENST00000469550 NRDCO43847 1150 aa11.07□□□□□ -0.64
HDAC3-205ENST00000469550 HMGB1P09429 215 aaKnown RBP11.07□□□□□ -0.64
HDAC3-205ENST00000469550 HUNKP57058 714 aa11.07□□□□□ -0.64
HDAC3-205ENST00000469550 STK3Q13188 491 aa11.07□□□□□ -0.64
HDAC3-205ENST00000469550 GRM1Q13255 1194 aa11.07□□□□□ -0.64
HDAC3-205ENST00000469550 E4F1Q66K89 784 aaPredicted RBP11.07□□□□□ -0.64
HDAC3-205ENST00000469550 LINS1Q8NG48 757 aa11.07□□□□□ -0.64
HDAC3-205ENST00000469550 DCPSQ96C86 337 aaKnown RBP11.07□□□□□ -0.64
HDAC3-205ENST00000469550 GMLQ99445 158 aa11.07□□□□□ -0.64
HDAC3-205ENST00000469550 NOL10Q9BSC4 688 aaKnown RBP11.07□□□□□ -0.64
HDAC3-205ENST00000469550 GOLPH3LQ9H4A5 285 aa11.07□□□□□ -0.64
HDAC3-205ENST00000469550 ZNF408Q9H9D4 720 aa11.07□□□□□ -0.64
HDAC3-205ENST00000469550 TRMT1Q9NXH9 659 aaKnown RBP11.07□□□□□ -0.64
HDAC3-205ENST00000469550 TAF6LQ9Y6J9 622 aa11.07□□□□□ -0.64
HDAC3-205ENST00000469550 MYH15Q9Y2K3 1946 aa11.07□□□□□ -0.64
HDAC3-205ENST00000469550 A0A1W2PQ27 194 aa11.07□□□□□ -0.64
HDAC3-205ENST00000469550 A0A1W2PQ64 194 aa11.07□□□□□ -0.64
HDAC3-205ENST00000469550 A0A1W2PQD8 194 aa11.07□□□□□ -0.64
HDAC3-205ENST00000469550 FAM155AB1AL88 458 aaPredicted RBP11.07□□□□□ -0.64
HDAC3-205ENST00000469550 ATP2B4P23634 1241 aa11.07□□□□□ -0.64
HDAC3-205ENST00000469550 CTSWP56202 376 aa11.07□□□□□ -0.64
HDAC3-205ENST00000469550 RGMBQ6NW40 437 aa11.07□□□□□ -0.64
HDAC3-205ENST00000469550 RSBN1LQ6PCB5 846 aaPredicted RBP11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms