RNA–Protein interactions for RNA: ENST00000460925.1

SF3A3-202, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 2

Gene SF3A3, Length 793 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-202ENST00000460925 VPS37DQ86XT2 251 aa6.61□□□□□ -1.35
SF3A3-202ENST00000460925 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.61□□□□□ -1.35
SF3A3-202ENST00000460925 GTPBP3Q969Y2 492 aaKnown RBP6.61□□□□□ -1.35
SF3A3-202ENST00000460925 SPATA32Q96LK8 384 aa6.61□□□□□ -1.35
SF3A3-202ENST00000460925 CEP44Q9C0F1 390 aa6.61□□□□□ -1.35
SF3A3-202ENST00000460925 PANK3Q9H999 370 aa6.61□□□□□ -1.35
SF3A3-202ENST00000460925 PPP1R1BQ9UD71 204 aaPredicted RBP6.61□□□□□ -1.35
SF3A3-202ENST00000460925 CRYBG1Q9Y4K1 1723 aa6.61□□□□□ -1.35
SF3A3-202ENST00000460925 PXDNQ92626 1479 aa6.6□□□□□ -1.35
SF3A3-202ENST00000460925 POLR3AO14802 1390 aaPredicted RBP6.6□□□□□ -1.35
SF3A3-202ENST00000460925 KTN1Q86UP2 1357 aaKnown RBP6.6□□□□□ -1.35
SF3A3-202ENST00000460925 LOC102724428A0A0B4J2F2 783 aa6.6□□□□□ -1.35
SF3A3-202ENST00000460925 ZBTB42B2RXF5 422 aa6.6□□□□□ -1.35
SF3A3-202ENST00000460925 GRIA4P48058 902 aa6.6□□□□□ -1.35
SF3A3-202ENST00000460925 SIK1P57059 783 aa6.6□□□□□ -1.35
SF3A3-202ENST00000460925 RBL2Q08999 1139 aa6.6□□□□□ -1.35
SF3A3-202ENST00000460925 PAK2Q13177 524 aa6.6□□□□□ -1.35
SF3A3-202ENST00000460925 NUTM2GQ5VZR2 741 aa6.6□□□□□ -1.35
SF3A3-202ENST00000460925 RELL1Q8IUW5 271 aa6.6□□□□□ -1.35
SF3A3-202ENST00000460925 NGDNQ8NEJ9 315 aaKnown RBP6.6□□□□□ -1.35
SF3A3-202ENST00000460925 NANOS1Q8WY41 292 aaKnown RBP6.6□□□□□ -1.35
SF3A3-202ENST00000460925 NXPE3Q969Y0 559 aa6.6□□□□□ -1.35
SF3A3-202ENST00000460925 GPRASP2Q96D09 838 aa6.6□□□□□ -1.35
SF3A3-202ENST00000460925 SPACA7Q96KW9 195 aa6.6□□□□□ -1.35
SF3A3-202ENST00000460925 TMEM74Q96NL1 305 aa6.6□□□□□ -1.35
SF3A3-202ENST00000460925 PBX4Q9BYU1 374 aa6.6□□□□□ -1.35
SF3A3-202ENST00000460925 AVENQ9NQS1 362 aaPredicted RBP6.6□□□□□ -1.35
SF3A3-202ENST00000460925 COL16A1Q07092 1604 aaPredicted RBP6.6□□□□□ -1.35
SF3A3-202ENST00000460925 AHDC1Q5TGY3 1603 aaPredicted RBP6.6□□□□□ -1.35
SF3A3-202ENST00000460925 PHRF1Q9P1Y6 1649 aaKnown RBP6.6□□□□□ -1.35
SF3A3-202ENST00000460925 IQSEC2Q5JU85 1478 aa6.6□□□□□ -1.35
SF3A3-202ENST00000460925 SIN3BO75182 1162 aa6.59□□□□□ -1.35
SF3A3-202ENST00000460925 HMGB1P09429 215 aaKnown RBP6.59□□□□□ -1.35
SF3A3-202ENST00000460925 FGRP09769 529 aa6.59□□□□□ -1.35
SF3A3-202ENST00000460925 ACPPP15309 386 aa6.59□□□□□ -1.35
SF3A3-202ENST00000460925 ATF4P18848 351 aaPredicted RBP6.59□□□□□ -1.35
SF3A3-202ENST00000460925 DNAJA1P31689 397 aaKnown RBP6.59□□□□□ -1.35
SF3A3-202ENST00000460925 ZNF468Q5VIY5 522 aaPredicted RBP6.59□□□□□ -1.35
SF3A3-202ENST00000460925 FOXR1Q6PIV2 292 aa6.59□□□□□ -1.35
SF3A3-202ENST00000460925 NME9Q86XW9 330 aa6.59□□□□□ -1.35
SF3A3-202ENST00000460925 TRERF1Q96PN7 1200 aa6.59□□□□□ -1.35
SF3A3-202ENST00000460925 SPON2Q9BUD6 331 aa6.59□□□□□ -1.35
SF3A3-202ENST00000460925 AKAP2Q9Y2D5 859 aa6.59□□□□□ -1.35
SF3A3-202ENST00000460925 EDC4Q6P2E9 1401 aaKnown RBP6.59□□□□□ -1.36
SF3A3-202ENST00000460925 NINLQ9Y2I6 1382 aa6.58□□□□□ -1.36
SF3A3-202ENST00000460925 MAP2P11137 1827 aaKnown RBP6.58□□□□□ -1.36
SF3A3-202ENST00000460925 A0A096LPE4 126 aa6.58□□□□□ -1.36
SF3A3-202ENST00000460925 A0A1W2PPZ6 126 aa6.58□□□□□ -1.36
SF3A3-202ENST00000460925 PDE2AO00408 941 aaPredicted RBP6.58□□□□□ -1.36
SF3A3-202ENST00000460925 CTBSQ01459 385 aa6.58□□□□□ -1.36
SF3A3-202ENST00000460925 CC2D1BQ5T0F9 858 aaKnown RBP6.58□□□□□ -1.36
SF3A3-202ENST00000460925 HDGFL2Q7Z4V5 671 aaPredicted RBP6.58□□□□□ -1.36
SF3A3-202ENST00000460925 RAB44Q7Z6P3 723 aaPredicted RBP6.58□□□□□ -1.36
SF3A3-202ENST00000460925 MCF2L2Q86YR7 1114 aa6.58□□□□□ -1.36
SF3A3-202ENST00000460925 SEC16BQ96JE7 1060 aa6.58□□□□□ -1.36
SF3A3-202ENST00000460925 RHOVQ96L33 236 aa6.58□□□□□ -1.36
SF3A3-202ENST00000460925 NSUN5Q96P11 429 aaKnown RBP6.58□□□□□ -1.36
SF3A3-202ENST00000460925 NECAB3Q96P71 396 aaPredicted RBP6.58□□□□□ -1.36
SF3A3-202ENST00000460925 GMPR2Q9P2T1 348 aaKnown RBP6.58□□□□□ -1.36
SF3A3-202ENST00000460925 ADAMTS1Q9UHI8 967 aa6.58□□□□□ -1.36
SF3A3-202ENST00000460925 LTN1O94822 1766 aa6.58□□□□□ -1.36
SF3A3-202ENST00000460925 USP54Q70EL1 1684 aa6.58□□□□□ -1.36
SF3A3-202ENST00000460925 SSH2Q76I76 1423 aa6.58□□□□□ -1.36
SF3A3-202ENST00000460925 MED1Q15648 1581 aaPredicted RBP6.57□□□□□ -1.36
SF3A3-202ENST00000460925 RGPD5Q99666 1765 aa6.57□□□□□ -1.36
SF3A3-202ENST00000460925 TTC21BQ7Z4L5 1316 aa6.57□□□□□ -1.36
SF3A3-202ENST00000460925 ENC1O14682 589 aa6.57□□□□□ -1.36
SF3A3-202ENST00000460925 PPFIA3O75145 1194 aa6.57□□□□□ -1.36
SF3A3-202ENST00000460925 FBLN1P23142 703 aa6.57□□□□□ -1.36
SF3A3-202ENST00000460925 EIF4A3P38919 411 aaKnown RBP6.57□□□□□ -1.36
SF3A3-202ENST00000460925 LIG3P49916 1009 aa6.57□□□□□ -1.36
SF3A3-202ENST00000460925 RPS26P62854 115 aaKnown RBP6.57□□□□□ -1.36
SF3A3-202ENST00000460925 DIEXFQ68CQ4 756 aaKnown RBP6.57□□□□□ -1.36
SF3A3-202ENST00000460925 KRT28Q7Z3Y7 464 aa6.57□□□□□ -1.36
SF3A3-202ENST00000460925 KIAA0825Q8IV33 1275 aa6.57□□□□□ -1.36
SF3A3-202ENST00000460925 PHC3Q8NDX5 983 aa6.57□□□□□ -1.36
SF3A3-202ENST00000460925 TNFRSF25Q93038 417 aa6.57□□□□□ -1.36
SF3A3-202ENST00000460925 HHIPQ96QV1 700 aa6.57□□□□□ -1.36
SF3A3-202ENST00000460925 MDFIQ99750 246 aa6.57□□□□□ -1.36
SF3A3-202ENST00000460925 TRIM56Q9BRZ2 755 aaKnown RBP6.57□□□□□ -1.36
SF3A3-202ENST00000460925 NT5C1AQ9BXI3 368 aa6.57□□□□□ -1.36
SF3A3-202ENST00000460925 ZNF576Q9H609 170 aa6.57□□□□□ -1.36
SF3A3-202ENST00000460925 DNAJB12Q9NXW2 375 aaKnown RBP6.57□□□□□ -1.36
SF3A3-202ENST00000460925 TERF2IPQ9NYB0 399 aa6.57□□□□□ -1.36
SF3A3-202ENST00000460925 PRR12Q9ULL5 1215 aa6.57□□□□□ -1.36
SF3A3-202ENST00000460925 OVOS2A0A0J9YW53 1432 aa6.57□□□□□ -1.36
SF3A3-202ENST00000460925 TNS3Q68CZ2 1445 aa6.57□□□□□ -1.36
SF3A3-202ENST00000460925 OVOS2Q6IE36 1432 aa6.57□□□□□ -1.36
SF3A3-202ENST00000460925 PEAK1Q9H792 1746 aa6.56□□□□□ -1.36
SF3A3-202ENST00000460925 NPHP3Q7Z494 1330 aa6.56□□□□□ -1.36
SF3A3-202ENST00000460925 GREM1O60565 184 aa6.56□□□□□ -1.36
SF3A3-202ENST00000460925 TOM1O60784 492 aa6.56□□□□□ -1.36
SF3A3-202ENST00000460925 TRPA1O75762 1119 aa6.56□□□□□ -1.36
SF3A3-202ENST00000460925 GARTP22102 1010 aa6.56□□□□□ -1.36
SF3A3-202ENST00000460925 GBP2P32456 591 aaPredicted RBP6.56□□□□□ -1.36
SF3A3-202ENST00000460925 TNNT2P45379 298 aaPredicted RBP6.56□□□□□ -1.36
SF3A3-202ENST00000460925 SPRED3Q2MJR0 410 aa6.56□□□□□ -1.36
SF3A3-202ENST00000460925 SOGA3Q5TF21 947 aa6.56□□□□□ -1.36
SF3A3-202ENST00000460925 ERICH6BQ5W0A0 696 aa6.56□□□□□ -1.36
SF3A3-202ENST00000460925 DPH6Q7L8W6 267 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms