RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 ENOX2Q16206 610 aaKnown RBP7.07□□□□□ -1.28
VPS29-202ENST00000447578 PKN1Q16512 942 aa7.07□□□□□ -1.28
VPS29-202ENST00000447578 FAM214BQ7L5A3 538 aa7.07□□□□□ -1.28
VPS29-202ENST00000447578 ATG4DQ86TL0 474 aaPredicted RBP7.07□□□□□ -1.28
VPS29-202ENST00000447578 C12orf40Q86WS4 652 aa7.07□□□□□ -1.28
VPS29-202ENST00000447578 FAM168AQ92567 244 aa7.07□□□□□ -1.28
VPS29-202ENST00000447578 NECAB3Q96P71 396 aaPredicted RBP7.07□□□□□ -1.28
VPS29-202ENST00000447578 EMILIN2Q9BXX0 1053 aa7.07□□□□□ -1.28
VPS29-202ENST00000447578 MKNK2Q9HBH9 465 aa7.07□□□□□ -1.28
VPS29-202ENST00000447578 TMEM265A0A087WTH1 108 aa7.06□□□□□ -1.28
VPS29-202ENST00000447578 MAPK1P28482 360 aa7.06□□□□□ -1.28
VPS29-202ENST00000447578 RASIP1Q5U651 963 aa7.06□□□□□ -1.28
VPS29-202ENST00000447578 SETDB2Q96T68 719 aa7.06□□□□□ -1.28
VPS29-202ENST00000447578 CACNA2D2Q9NY47 1150 aa7.06□□□□□ -1.28
VPS29-202ENST00000447578 B8ZZF3 427 aa7.05□□□□□ -1.28
VPS29-202ENST00000447578 ENC1O14682 589 aa7.05□□□□□ -1.28
VPS29-202ENST00000447578 TREHO43280 583 aa7.05□□□□□ -1.28
VPS29-202ENST00000447578 LILRA6Q6PI73 481 aa7.05□□□□□ -1.28
VPS29-202ENST00000447578 TNKS2Q9H2K2 1166 aa7.05□□□□□ -1.28
VPS29-202ENST00000447578 OSBPL7Q9BZF2 842 aa7.04□□□□□ -1.28
VPS29-202ENST00000447578 PRDM10Q9NQV6 1147 aa7.04□□□□□ -1.28
VPS29-202ENST00000447578 PICK1Q9NRD5 415 aa7.04□□□□□ -1.28
VPS29-202ENST00000447578 RING1Q06587 406 aa7.03□□□□□ -1.28
VPS29-202ENST00000447578 PDE4CQ08493 712 aa7.03□□□□□ -1.28
VPS29-202ENST00000447578 ANGEL2Q5VTE6 544 aaKnown RBP7.03□□□□□ -1.28
VPS29-202ENST00000447578 GSTT1P30711 240 aa7.02□□□□□ -1.29
VPS29-202ENST00000447578 MAPK8P45983 427 aa7.02□□□□□ -1.29
VPS29-202ENST00000447578 NKPD1Q17RQ9 610 aa7.02□□□□□ -1.29
VPS29-202ENST00000447578 SLC23A3Q6PIS1 610 aa7.02□□□□□ -1.29
VPS29-202ENST00000447578 SPACA3Q8IXA5 215 aa7.02□□□□□ -1.29
VPS29-202ENST00000447578 GTF2IRD1Q9UHL9 959 aa7.02□□□□□ -1.29
VPS29-202ENST00000447578 WWC3Q9ULE0 1092 aa7.02□□□□□ -1.29
VPS29-202ENST00000447578 PCDHA4Q9UN74 947 aa7.02□□□□□ -1.29
VPS29-202ENST00000447578 GNEQ9Y223 722 aaKnown RBP7.02□□□□□ -1.29
VPS29-202ENST00000447578 SNX11Q9Y5W9 270 aa7.02□□□□□ -1.29
VPS29-202ENST00000447578 RBAK-RBAKDNI3L0D1 243 aa7.01□□□□□ -1.29
VPS29-202ENST00000447578 FARP2O94887 1054 aaPredicted RBP7.01□□□□□ -1.29
VPS29-202ENST00000447578 TRIM37O94972 964 aa7.01□□□□□ -1.29
VPS29-202ENST00000447578 EOMESO95936 686 aa7.01□□□□□ -1.29
VPS29-202ENST00000447578 IKZF1Q13422 519 aa7.01□□□□□ -1.29
VPS29-202ENST00000447578 ZBTB37Q5TC79 503 aa7.01□□□□□ -1.29
VPS29-202ENST00000447578 IGF2BP3O00425 579 aaKnown RBP eCLIP7□□□□□ -1.29
VPS29-202ENST00000447578 CELA3AP09093 270 aa7□□□□□ -1.29
VPS29-202ENST00000447578 ZP2Q05996 745 aa7□□□□□ -1.29
VPS29-202ENST00000447578 PTPN11Q06124 597 aaPredicted RBP7□□□□□ -1.29
VPS29-202ENST00000447578 INPP5AQ14642 412 aa7□□□□□ -1.29
VPS29-202ENST00000447578 LLGL2Q6P1M3 1020 aa7□□□□□ -1.29
VPS29-202ENST00000447578 TMEM40Q8WWA1 233 aa7□□□□□ -1.29
VPS29-202ENST00000447578 ASB11Q8WXH4 323 aa7□□□□□ -1.29
VPS29-202ENST00000447578 CEP44Q9C0F1 390 aa7□□□□□ -1.29
VPS29-202ENST00000447578 SAMM50Q9Y512 469 aa7□□□□□ -1.29
VPS29-202ENST00000447578 CNTNAP4Q9C0A0 1308 aa7□□□□□ -1.29
VPS29-202ENST00000447578 FANCGO15287 622 aa6.99□□□□□ -1.29
VPS29-202ENST00000447578 BUD31P41223 144 aaPredicted RBP6.99□□□□□ -1.29
VPS29-202ENST00000447578 CDC37L1Q7L3B6 337 aa6.99□□□□□ -1.29
VPS29-202ENST00000447578 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.99□□□□□ -1.29
VPS29-202ENST00000447578 FMR1Q06787 632 aaKnown RBP eCLIP6.98□□□□□ -1.29
VPS29-202ENST00000447578 ARMCX6Q7L4S7 300 aa6.98□□□□□ -1.29
VPS29-202ENST00000447578 ELMO3Q96BJ8 720 aa6.98□□□□□ -1.29
VPS29-202ENST00000447578 SRCIN1Q9C0H9 1055 aa6.98□□□□□ -1.29
VPS29-202ENST00000447578 GZF1Q9H116 711 aaPredicted RBP6.98□□□□□ -1.29
VPS29-202ENST00000447578 PPM1HQ9ULR3 514 aa6.98□□□□□ -1.29
VPS29-202ENST00000447578 PRAMEF27A3QJZ7 478 aa6.97□□□□□ -1.29
VPS29-202ENST00000447578 GNAT3A8MTJ3 354 aa6.97□□□□□ -1.29
VPS29-202ENST00000447578 PRR33A8MZF0 331 aa6.97□□□□□ -1.29
VPS29-202ENST00000447578 SLITRK5O94991 958 aa6.97□□□□□ -1.29
VPS29-202ENST00000447578 BRD1O95696 1058 aa6.97□□□□□ -1.29
VPS29-202ENST00000447578 LRRC14Q15048 493 aa6.97□□□□□ -1.29
VPS29-202ENST00000447578 FYB2Q5VWT5 728 aa6.97□□□□□ -1.29
VPS29-202ENST00000447578 PCNX4Q63HM2 1172 aa6.97□□□□□ -1.29
VPS29-202ENST00000447578 LRFN4Q6PJG9 635 aa6.97□□□□□ -1.29
VPS29-202ENST00000447578 KSR1Q8IVT5 923 aa6.97□□□□□ -1.29
VPS29-202ENST00000447578 FLAD1Q8NFF5 587 aa6.97□□□□□ -1.29
VPS29-202ENST00000447578 FBF1Q8TES7 1133 aa6.97□□□□□ -1.29
VPS29-202ENST00000447578 FBRSQ9HAH7 460 aa6.97□□□□□ -1.29
VPS29-202ENST00000447578 PRDM5Q9NQX1 630 aaPredicted RBP6.97□□□□□ -1.29
VPS29-202ENST00000447578 PITPNM2Q9BZ72 1349 aa6.97□□□□□ -1.29
VPS29-202ENST00000447578 ZNF503-AS2A6NEH8 195 aa6.96□□□□□ -1.3
VPS29-202ENST00000447578 LRRC10BA6NIK2 292 aa6.96□□□□□ -1.3
VPS29-202ENST00000447578 CDK8P49336 464 aa6.96□□□□□ -1.3
VPS29-202ENST00000447578 MESP2Q0VG99 397 aa6.96□□□□□ -1.3
VPS29-202ENST00000447578 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.96□□□□□ -1.3
VPS29-202ENST00000447578 ZSWIM9Q86XI8 627 aa6.96□□□□□ -1.3
VPS29-202ENST00000447578 ZNF507Q8TCN5 953 aa6.96□□□□□ -1.3
VPS29-202ENST00000447578 CYP8B1Q9UNU6 501 aa6.96□□□□□ -1.3
VPS29-202ENST00000447578 CTNND2Q9UQB3 1225 aa6.96□□□□□ -1.3
VPS29-202ENST00000447578 LRIG2O94898 1065 aa6.95□□□□□ -1.3
VPS29-202ENST00000447578 SLBPQ14493 270 aaKnown RBP eCLIP6.95□□□□□ -1.3
VPS29-202ENST00000447578 KCNMB1Q16558 191 aa6.95□□□□□ -1.3
VPS29-202ENST00000447578 NKG7Q16617 165 aa6.95□□□□□ -1.3
VPS29-202ENST00000447578 MLANAQ16655 118 aa6.95□□□□□ -1.3
VPS29-202ENST00000447578 TMCO4Q5TGY1 634 aa6.95□□□□□ -1.3
VPS29-202ENST00000447578 CDKAL1Q5VV42 579 aa6.95□□□□□ -1.3
VPS29-202ENST00000447578 KCT2Q8NC54 265 aa6.95□□□□□ -1.3
VPS29-202ENST00000447578 RIN3Q8TB24 985 aa6.95□□□□□ -1.3
VPS29-202ENST00000447578 PLPPR2Q96GM1 343 aa6.95□□□□□ -1.3
VPS29-202ENST00000447578 LIN37Q96GY3 246 aaPredicted RBP6.95□□□□□ -1.3
VPS29-202ENST00000447578 HSPA12BQ96MM6 686 aa6.95□□□□□ -1.3
VPS29-202ENST00000447578 ATP13A1Q9HD20 1204 aa6.95□□□□□ -1.3
VPS29-202ENST00000447578 USP17L7P0C7H9 530 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms