RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 LDHBP07195 334 aaKnown RBP21.06■□□□□ 0.96
USP48-204ENST00000400301 NAPAP54920 295 aa21.06■□□□□ 0.96
USP48-204ENST00000400301 CCDC178Q5BJE1 867 aa21.06■□□□□ 0.96
USP48-204ENST00000400301 GBP3Q9H0R5 595 aa21.06■□□□□ 0.96
USP48-204ENST00000400301 PIH1D3Q9NQM4 214 aaKnown RBP21.06■□□□□ 0.96
USP48-204ENST00000400301 CACNA2D4Q7Z3S7 1137 aa21.06■□□□□ 0.96
USP48-204ENST00000400301 PLIN2Q99541 437 aa21.06■□□□□ 0.96
USP48-204ENST00000400301 RTCBQ9Y3I0 505 aaKnown RBP21.06■□□□□ 0.96
USP48-204ENST00000400301 PSMA7O14818 248 aa21.05■□□□□ 0.96
USP48-204ENST00000400301 LEKR1Q6ZMV7 388 aa21.05■□□□□ 0.96
USP48-204ENST00000400301 AK9Q5TCS8 1911 aa21.05■□□□□ 0.96
USP48-204ENST00000400301 PPP2R5BQ15173 497 aa21.05■□□□□ 0.96
USP48-204ENST00000400301 TTC38Q5R3I4 469 aa21.05■□□□□ 0.96
USP48-204ENST00000400301 USPL1Q5W0Q7 1092 aa21.05■□□□□ 0.96
USP48-204ENST00000400301 C8orf37Q96NL8 207 aa21.05■□□□□ 0.96
USP48-204ENST00000400301 EXOC1Q9NV70 894 aa21.05■□□□□ 0.96
USP48-204ENST00000400301 ZNF609O15014 1411 aa21.05■□□□□ 0.96
USP48-204ENST00000400301 GNPATO15228 680 aa21.05■□□□□ 0.96
USP48-204ENST00000400301 TNKSO95271 1327 aa21.05■□□□□ 0.96
USP48-204ENST00000400301 TRIM21P19474 475 aaKnown RBP21.05■□□□□ 0.96
USP48-204ENST00000400301 CWC15Q9P013 229 aaKnown RBP21.05■□□□□ 0.96
USP48-204ENST00000400301 USP17L12C9JPN9 530 aa21.05■□□□□ 0.96
USP48-204ENST00000400301 USP17L21D6R901 530 aa21.05■□□□□ 0.96
USP48-204ENST00000400301 IGSF3O75054 1194 aa21.05■□□□□ 0.96
USP48-204ENST00000400301 RFX5P48382 616 aaPredicted RBP21.05■□□□□ 0.96
USP48-204ENST00000400301 DTHD1Q6ZMT9 781 aa21.05■□□□□ 0.96
USP48-204ENST00000400301 STAMQ92783 540 aa21.05■□□□□ 0.96
USP48-204ENST00000400301 CHRNDQ07001 517 aa21.04■□□□□ 0.96
USP48-204ENST00000400301 TICAM2Q86XR7 235 aa21.04■□□□□ 0.96
USP48-204ENST00000400301 TXLNBQ8N3L3 684 aa21.04■□□□□ 0.96
USP48-204ENST00000400301 CCT6AP40227 531 aaKnown RBP21.04■□□□□ 0.96
USP48-204ENST00000400301 SMARCC2Q8TAQ2 1214 aa21.04■□□□□ 0.96
USP48-204ENST00000400301 ZNF827Q17R98 1081 aa21.04■□□□□ 0.96
USP48-204ENST00000400301 TSG101Q99816 390 aa21.04■□□□□ 0.96
USP48-204ENST00000400301 ISCA1Q9BUE6 129 aa21.04■□□□□ 0.96
USP48-204ENST00000400301 AKR1B15C9JRZ8 316 aaPredicted RBP21.03■□□□□ 0.96
USP48-204ENST00000400301 PRKAB2O43741 272 aa21.03■□□□□ 0.96
USP48-204ENST00000400301 KRBA2Q6ZNG9 492 aa21.03■□□□□ 0.96
USP48-204ENST00000400301 FEZ1Q99689 392 aa21.03■□□□□ 0.96
USP48-204ENST00000400301 SH2B2O14492 632 aaPredicted RBP21.03■□□□□ 0.96
USP48-204ENST00000400301 FAM193AP78312 1265 aa21.03■□□□□ 0.96
USP48-204ENST00000400301 ASIC1P78348 528 aa21.03■□□□□ 0.96
USP48-204ENST00000400301 SCARF1Q14162 830 aa21.03■□□□□ 0.96
USP48-204ENST00000400301 IQCEQ6IPM2 695 aa21.03■□□□□ 0.96
USP48-204ENST00000400301 IGSF22Q8N9C0 903 aa21.03■□□□□ 0.96
USP48-204ENST00000400301 PCDHA5Q9Y5H7 936 aa21.03■□□□□ 0.96
USP48-204ENST00000400301 SNAP23O00161 211 aa21.03■□□□□ 0.96
USP48-204ENST00000400301 ELF2Q15723 593 aa21.03■□□□□ 0.96
USP48-204ENST00000400301 SKIDA1Q1XH10 827 aa21.03■□□□□ 0.96
USP48-204ENST00000400301 FGFR1OPO95684 399 aaKnown RBP21.03■□□□□ 0.96
USP48-204ENST00000400301 ZNF76P36508 570 aa21.03■□□□□ 0.96
USP48-204ENST00000400301 ZNF804AQ7Z570 1209 aa21.03■□□□□ 0.96
USP48-204ENST00000400301 FANCLQ9NW38 375 aa21.03■□□□□ 0.96
USP48-204ENST00000400301 MAPK8IP1Q9UQF2 711 aa21.03■□□□□ 0.96
USP48-204ENST00000400301 ANKRD26Q9UPS8 1709 aa21.02■□□□□ 0.96
USP48-204ENST00000400301 LOC102724428A0A0B4J2F2 783 aa21.02■□□□□ 0.96
USP48-204ENST00000400301 SIK1P57059 783 aa21.02■□□□□ 0.96
USP48-204ENST00000400301 FAM47AQ5JRC9 791 aa21.02■□□□□ 0.96
USP48-204ENST00000400301 ZSWIM5Q9P217 1185 aa21.02■□□□□ 0.96
USP48-204ENST00000400301 FAM114A1Q8IWE2 563 aa21.02■□□□□ 0.95
USP48-204ENST00000400301 ARFGAP3Q9NP61 516 aa21.02■□□□□ 0.95
USP48-204ENST00000400301 CRKLP46109 303 aaKnown RBP21.01■□□□□ 0.95
USP48-204ENST00000400301 ENOX2Q16206 610 aaKnown RBP21.01■□□□□ 0.95
USP48-204ENST00000400301 TNS3Q68CZ2 1445 aa21.01■□□□□ 0.95
USP48-204ENST00000400301 F8W031 263 aaPredicted RBP21.01■□□□□ 0.95
USP48-204ENST00000400301 ARHGAP6O43182 974 aa21.01■□□□□ 0.95
USP48-204ENST00000400301 CDC25BP30305 580 aa21.01■□□□□ 0.95
USP48-204ENST00000400301 TDRD12Q587J7 1177 aaKnown RBP21.01■□□□□ 0.95
USP48-204ENST00000400301 VPS16Q9H269 839 aa21.01■□□□□ 0.95
USP48-204ENST00000400301 GOLPH3LQ9H4A5 285 aa21.01■□□□□ 0.95
USP48-204ENST00000400301 CTNND2Q9UQB3 1225 aa21.01■□□□□ 0.95
USP48-204ENST00000400301 USO1O60763 962 aaKnown RBP21■□□□□ 0.95
USP48-204ENST00000400301 RPS8P62241 208 aaKnown RBP21■□□□□ 0.95
USP48-204ENST00000400301 UBXN1Q04323 297 aa21■□□□□ 0.95
USP48-204ENST00000400301 RASGRF1Q13972 1273 aa21■□□□□ 0.95
USP48-204ENST00000400301 C6orf50Q9HD87 102 aa21■□□□□ 0.95
USP48-204ENST00000400301 RNF216Q9NWF9 866 aaPredicted RBP21■□□□□ 0.95
USP48-204ENST00000400301 OGFRQ9NZT2 677 aa21■□□□□ 0.95
USP48-204ENST00000400301 SYNRGQ9UMZ2 1314 aa21■□□□□ 0.95
USP48-204ENST00000400301 STRBPQ96SI9 672 aaKnown RBP21■□□□□ 0.95
USP48-204ENST00000400301 GNL3Q9BVP2 549 aaKnown RBP eCLIP21■□□□□ 0.95
USP48-204ENST00000400301 ZNF215Q9UL58 517 aaPredicted RBP21■□□□□ 0.95
USP48-204ENST00000400301 PICALMQ13492 652 aa21■□□□□ 0.95
USP48-204ENST00000400301 LCORLQ8N3X6 602 aa21■□□□□ 0.95
USP48-204ENST00000400301 ZSCAN10Q96SZ4 725 aaPredicted RBP21■□□□□ 0.95
USP48-204ENST00000400301 SAP30BPQ9UHR5 308 aaKnown RBP21■□□□□ 0.95
USP48-204ENST00000400301 PPP6R2O75170 966 aa20.99■□□□□ 0.95
USP48-204ENST00000400301 EXOSC10Q01780 885 aaKnown RBP20.99■□□□□ 0.95
USP48-204ENST00000400301 ZNF569Q5MCW4 686 aa20.99■□□□□ 0.95
USP48-204ENST00000400301 CNGA4Q8IV77 575 aa20.99■□□□□ 0.95
USP48-204ENST00000400301 KCNB2Q92953 911 aa20.99■□□□□ 0.95
USP48-204ENST00000400301 FERMT2Q96AC1 680 aa20.99■□□□□ 0.95
USP48-204ENST00000400301 TBC1D10CQ8IV04 446 aa20.99■□□□□ 0.95
USP48-204ENST00000400301 MB21D2Q8IYB1 491 aaPredicted RBP20.99■□□□□ 0.95
USP48-204ENST00000400301 CRACR2AQ9BSW2 395 aa20.99■□□□□ 0.95
USP48-204ENST00000400301 WWC2Q6AWC2 1192 aa20.98■□□□□ 0.95
USP48-204ENST00000400301 CARD6Q9BX69 1037 aa20.98■□□□□ 0.95
USP48-204ENST00000400301 ERVV-1B6SEH8 477 aa20.98■□□□□ 0.95
USP48-204ENST00000400301 POTEB2H3BUK9 544 aa20.98■□□□□ 0.95
USP48-204ENST00000400301 ARID5BQ14865 1188 aa20.98■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms