RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 CTNND2Q9UQB3 1225 aa18.34■□□□□ 0.53
PCDH1-203ENST00000394536 SPATA31D1Q6ZQQ2 1576 aa18.34■□□□□ 0.53
PCDH1-203ENST00000394536 CTAGE15A4D2H0 777 aa18.33■□□□□ 0.53
PCDH1-203ENST00000394536 CTAGE8P0CG41 777 aa18.33■□□□□ 0.53
PCDH1-203ENST00000394536 CTAGE6Q86UF2 777 aa18.33■□□□□ 0.53
PCDH1-203ENST00000394536 CTAGE4Q8IX94 777 aa18.33■□□□□ 0.53
PCDH1-203ENST00000394536 CCDC148Q8NFR7 591 aa18.33■□□□□ 0.53
PCDH1-203ENST00000394536 MKNK2Q9HBH9 465 aa18.33■□□□□ 0.53
PCDH1-203ENST00000394536 ZCCHC17Q9NP64 241 aaKnown RBP18.33■□□□□ 0.53
PCDH1-203ENST00000394536 NIP7Q9Y221 180 aaKnown RBP eCLIP18.33■□□□□ 0.53
PCDH1-203ENST00000394536 PATL2C9JE40 543 aaKnown RBP18.33■□□□□ 0.52
PCDH1-203ENST00000394536 CIAO1O76071 339 aa18.33■□□□□ 0.52
PCDH1-203ENST00000394536 OAS2P29728 719 aaKnown RBP18.33■□□□□ 0.52
PCDH1-203ENST00000394536 ADD2P35612 726 aa18.33■□□□□ 0.52
PCDH1-203ENST00000394536 CHMP4BP1P59074 171 aa18.33■□□□□ 0.52
PCDH1-203ENST00000394536 SYCP1Q15431 976 aa18.33■□□□□ 0.52
PCDH1-203ENST00000394536 SHC4Q6S5L8 630 aa18.33■□□□□ 0.52
PCDH1-203ENST00000394536 IKBKBO14920 756 aa18.33■□□□□ 0.52
PCDH1-203ENST00000394536 PDE8BO95263 885 aa18.33■□□□□ 0.52
PCDH1-203ENST00000394536 TERF2Q15554 542 aa18.33■□□□□ 0.52
PCDH1-203ENST00000394536 NOM1Q5C9Z4 860 aaKnown RBP18.33■□□□□ 0.52
PCDH1-203ENST00000394536 TRIM47Q96LD4 638 aa18.33■□□□□ 0.52
PCDH1-203ENST00000394536 PCDHB6Q9Y5E3 794 aa18.33■□□□□ 0.52
PCDH1-203ENST00000394536 KRT2P35908 639 aa18.32■□□□□ 0.52
PCDH1-203ENST00000394536 UBXN1Q04323 297 aa18.32■□□□□ 0.52
PCDH1-203ENST00000394536 LPIN2Q92539 896 aa18.32■□□□□ 0.52
PCDH1-203ENST00000394536 TAB2Q9NYJ8 693 aa18.32■□□□□ 0.52
PCDH1-203ENST00000394536 PRDM4Q9UKN5 801 aa18.32■□□□□ 0.52
PCDH1-203ENST00000394536 STX8Q9UNK0 236 aa18.32■□□□□ 0.52
PCDH1-203ENST00000394536 MAGEB6P1A0A0J9YX57 407 aa18.32■□□□□ 0.52
PCDH1-203ENST00000394536 PCCAP05165 728 aaPredicted RBP18.32■□□□□ 0.52
PCDH1-203ENST00000394536 CTSWP56202 376 aa18.32■□□□□ 0.52
PCDH1-203ENST00000394536 ZNF654Q8IZM8 581 aa18.32■□□□□ 0.52
PCDH1-203ENST00000394536 CDK5RAP3Q96JB5 506 aa18.32■□□□□ 0.52
PCDH1-203ENST00000394536 HEG1Q9ULI3 1381 aa18.32■□□□□ 0.52
PCDH1-203ENST00000394536 SH2B2O14492 632 aaPredicted RBP18.32■□□□□ 0.52
PCDH1-203ENST00000394536 SMC1AQ14683 1233 aaKnown RBP18.32■□□□□ 0.52
PCDH1-203ENST00000394536 PIK3AP1Q6ZUJ8 805 aa18.32■□□□□ 0.52
PCDH1-203ENST00000394536 ZHX3Q9H4I2 956 aa18.32■□□□□ 0.52
PCDH1-203ENST00000394536 JADE2Q9NQC1 790 aa18.32■□□□□ 0.52
PCDH1-203ENST00000394536 TRIM21P19474 475 aaKnown RBP18.31■□□□□ 0.52
PCDH1-203ENST00000394536 FANCBQ8NB91 859 aa18.31■□□□□ 0.52
PCDH1-203ENST00000394536 GDAP1L1Q96MZ0 367 aa18.31■□□□□ 0.52
PCDH1-203ENST00000394536 CTAGE1Q96RT6 745 aa18.31■□□□□ 0.52
PCDH1-203ENST00000394536 SLF1Q9BQI6 1058 aa18.31■□□□□ 0.52
PCDH1-203ENST00000394536 CRACR2AQ9BSW2 395 aa18.31■□□□□ 0.52
PCDH1-203ENST00000394536 CSRNP2Q9H175 543 aa18.31■□□□□ 0.52
PCDH1-203ENST00000394536 PDE8AO60658 829 aa18.31■□□□□ 0.52
PCDH1-203ENST00000394536 CAPN2P17655 700 aa18.31■□□□□ 0.52
PCDH1-203ENST00000394536 STAT6P42226 847 aa18.31■□□□□ 0.52
PCDH1-203ENST00000394536 HLFQ16534 295 aa18.31■□□□□ 0.52
PCDH1-203ENST00000394536 HINFPQ9BQA5 517 aa18.31■□□□□ 0.52
PCDH1-203ENST00000394536 COL15A1P39059 1388 aa18.31■□□□□ 0.52
PCDH1-203ENST00000394536 USP5P45974 858 aa18.31■□□□□ 0.52
PCDH1-203ENST00000394536 MTIF2P46199 727 aaKnown RBP18.31■□□□□ 0.52
PCDH1-203ENST00000394536 ANTXR2P58335 489 aa18.31■□□□□ 0.52
PCDH1-203ENST00000394536 VSTM4Q8IW00 320 aa18.31■□□□□ 0.52
PCDH1-203ENST00000394536 MAN1B1Q9UKM7 699 aa18.31■□□□□ 0.52
PCDH1-203ENST00000394536 SYNRGQ9UMZ2 1314 aa18.31■□□□□ 0.52
PCDH1-203ENST00000394536 PXDNQ92626 1479 aa18.31■□□□□ 0.52
PCDH1-203ENST00000394536 ERVV-2B6SEH9 535 aa18.3■□□□□ 0.52
PCDH1-203ENST00000394536 PPP6R2O75170 966 aa18.3■□□□□ 0.52
PCDH1-203ENST00000394536 ERCC3P19447 782 aa18.3■□□□□ 0.52
PCDH1-203ENST00000394536 GYS2P54840 703 aa18.3■□□□□ 0.52
PCDH1-203ENST00000394536 ATP2B2Q01814 1243 aa18.3■□□□□ 0.52
PCDH1-203ENST00000394536 CCDC152Q4G0S7 254 aa18.3■□□□□ 0.52
PCDH1-203ENST00000394536 CCDC181Q5TID7 509 aa18.3■□□□□ 0.52
PCDH1-203ENST00000394536 IRX2Q9BZI1 471 aaPredicted RBP18.3■□□□□ 0.52
PCDH1-203ENST00000394536 ADAMTS2O95450 1211 aa18.3■□□□□ 0.52
PCDH1-203ENST00000394536 PNMA6AP0CW24 399 aaPredicted RBP18.3■□□□□ 0.52
PCDH1-203ENST00000394536 CDC25AP30304 524 aa18.3■□□□□ 0.52
PCDH1-203ENST00000394536 KRT9P35527 623 aa18.3■□□□□ 0.52
PCDH1-203ENST00000394536 BBXQ8WY36 941 aaPredicted RBP18.3■□□□□ 0.52
PCDH1-203ENST00000394536 DIP2AQ14689 1571 aa18.3■□□□□ 0.52
PCDH1-203ENST00000394536 NYAP1Q6ZVC0 841 aa18.3■□□□□ 0.52
PCDH1-203ENST00000394536 IQUBQ8NA54 791 aa18.3■□□□□ 0.52
PCDH1-203ENST00000394536 EPSTI1Q96J88 318 aa18.3■□□□□ 0.52
PCDH1-203ENST00000394536 AGLP35573 1532 aa18.29■□□□□ 0.52
PCDH1-203ENST00000394536 SOWAHDA6NJG2 315 aa18.29■□□□□ 0.52
PCDH1-203ENST00000394536 EFCAB8A8MWE9 144 aa18.29■□□□□ 0.52
PCDH1-203ENST00000394536 IDEP14735 1019 aa18.29■□□□□ 0.52
PCDH1-203ENST00000394536 ILDR1Q86SU0 546 aaPredicted RBP18.29■□□□□ 0.52
PCDH1-203ENST00000394536 GBP3Q9H0R5 595 aa18.29■□□□□ 0.52
PCDH1-203ENST00000394536 NCAPD2Q15021 1401 aa18.29■□□□□ 0.52
PCDH1-203ENST00000394536 NUTM2BA6NNL0 878 aaPredicted RBP18.29■□□□□ 0.52
PCDH1-203ENST00000394536 NUTM2EB1AL46 878 aaPredicted RBP18.29■□□□□ 0.52
PCDH1-203ENST00000394536 GUCY1A2P33402 732 aa18.29■□□□□ 0.52
PCDH1-203ENST00000394536 TTLL11Q8NHH1 800 aa18.29■□□□□ 0.52
PCDH1-203ENST00000394536 SEC31BQ9NQW1 1179 aa18.29■□□□□ 0.52
PCDH1-203ENST00000394536 DIP2BQ9P265 1576 aa18.28■□□□□ 0.52
PCDH1-203ENST00000394536 UBE3CQ15386 1083 aa18.28■□□□□ 0.52
PCDH1-203ENST00000394536 TOGARAM2Q6ZUX3 1019 aa18.28■□□□□ 0.52
PCDH1-203ENST00000394536 HPS5Q9UPZ3 1129 aa18.28■□□□□ 0.52
PCDH1-203ENST00000394536 CCDC178Q5BJE1 867 aa18.28■□□□□ 0.52
PCDH1-203ENST00000394536 CCDC24Q8N4L8 307 aa18.28■□□□□ 0.52
PCDH1-203ENST00000394536 CEP112Q8N8E3 955 aa18.28■□□□□ 0.52
PCDH1-203ENST00000394536 ZBTB1Q9Y2K1 713 aa18.28■□□□□ 0.52
PCDH1-203ENST00000394536 MORC2Q9Y6X9 1032 aaPredicted RBP18.28■□□□□ 0.52
PCDH1-203ENST00000394536 NEDD4P46934 1319 aa18.28■□□□□ 0.52
PCDH1-203ENST00000394536 ATP6V1AP38606 617 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms