RNA–Protein interactions for RNA: ENST00000380285.7

SNX1-202, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 8,119 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-202ENST00000380285 SPOPO43791 374 aa10.67□□□□□ -0.7
SNX1-202ENST00000380285 RAPGEF1Q13905 1077 aa10.67□□□□□ -0.7
SNX1-202ENST00000380285 ZKSCAN3Q9BRR0 538 aa10.67□□□□□ -0.7
SNX1-202ENST00000380285 ZNF853P0CG23 659 aa10.67□□□□□ -0.7
SNX1-202ENST00000380285 VSIG1Q86XK7 387 aa10.67□□□□□ -0.7
SNX1-202ENST00000380285 POLKQ9UBT6 870 aa10.67□□□□□ -0.7
SNX1-202ENST00000380285 KCNG1Q9UIX4 513 aa10.67□□□□□ -0.7
SNX1-202ENST00000380285 TMEM110-MUSTN1A8MSY1 372 aa10.66□□□□□ -0.7
SNX1-202ENST00000380285 GKAP1Q5VSY0 366 aaPredicted RBP10.66□□□□□ -0.7
SNX1-202ENST00000380285 HOMER3Q9NSC5 361 aa10.66□□□□□ -0.7
SNX1-202ENST00000380285 EXOC7Q9UPT5 735 aa10.66□□□□□ -0.7
SNX1-202ENST00000380285 A2MP01023 1474 aa10.66□□□□□ -0.7
SNX1-202ENST00000380285 C6orf229H3BNL8 230 aa10.66□□□□□ -0.7
SNX1-202ENST00000380285 ATP6V1AP38606 617 aa10.66□□□□□ -0.7
SNX1-202ENST00000380285 KIAA0232Q92628 1395 aa10.66□□□□□ -0.7
SNX1-202ENST00000380285 POLR2DO15514 142 aaKnown RBP10.66□□□□□ -0.7
SNX1-202ENST00000380285 HOXA7P31268 230 aaPredicted RBP10.66□□□□□ -0.7
SNX1-202ENST00000380285 PDE4DQ08499 809 aa10.66□□□□□ -0.7
SNX1-202ENST00000380285 CEP120Q8N960 986 aa10.66□□□□□ -0.7
SNX1-202ENST00000380285 FAN1Q9Y2M0 1017 aa10.66□□□□□ -0.7
SNX1-202ENST00000380285 KRT9P35527 623 aa10.66□□□□□ -0.7
SNX1-202ENST00000380285 PHLDB3Q6NSJ2 640 aa10.66□□□□□ -0.7
SNX1-202ENST00000380285 RABGGTAQ92696 567 aa10.66□□□□□ -0.7
SNX1-202ENST00000380285 RUNDC3BQ96NL0 473 aa10.66□□□□□ -0.7
SNX1-202ENST00000380285 NFE2L3Q9Y4A8 694 aa10.66□□□□□ -0.7
SNX1-202ENST00000380285 DKC1O60832 514 aaKnown RBP eCLIP10.66□□□□□ -0.7
SNX1-202ENST00000380285 STK10O94804 968 aaKnown RBP10.66□□□□□ -0.7
SNX1-202ENST00000380285 PARP1P09874 1014 aaKnown RBP10.66□□□□□ -0.7
SNX1-202ENST00000380285 RPS6KA1Q15418 735 aa10.66□□□□□ -0.7
SNX1-202ENST00000380285 APPBP2Q92624 585 aa10.66□□□□□ -0.7
SNX1-202ENST00000380285 STX10O60499 249 aa10.66□□□□□ -0.7
SNX1-202ENST00000380285 BCRP11274 1271 aa10.66□□□□□ -0.7
SNX1-202ENST00000380285 SMTNP53814 917 aa10.66□□□□□ -0.7
SNX1-202ENST00000380285 LARSQ9P2J5 1176 aaKnown RBP10.66□□□□□ -0.7
SNX1-202ENST00000380285 UHRF1BP1LA0JNW5 1464 aa10.65□□□□□ -0.7
SNX1-202ENST00000380285 SMIM23A6NLE4 172 aa10.65□□□□□ -0.7
SNX1-202ENST00000380285 ARMC9Q7Z3E5 817 aa10.65□□□□□ -0.7
SNX1-202ENST00000380285 DMTNQ08495 405 aa10.65□□□□□ -0.7
SNX1-202ENST00000380285 SRGAP1Q7Z6B7 1085 aa10.65□□□□□ -0.7
SNX1-202ENST00000380285 NUF2Q9BZD4 464 aa10.65□□□□□ -0.7
SNX1-202ENST00000380285 EDC4Q6P2E9 1401 aaKnown RBP10.65□□□□□ -0.7
SNX1-202ENST00000380285 RPUSD2Q8IZ73 545 aaKnown RBP10.65□□□□□ -0.7
SNX1-202ENST00000380285 MAGEB6Q8N7X4 407 aa10.65□□□□□ -0.7
SNX1-202ENST00000380285 DSCC1Q9BVC3 393 aa10.65□□□□□ -0.7
SNX1-202ENST00000380285 KIAA1468Q9P260 1216 aa10.65□□□□□ -0.7
SNX1-202ENST00000380285 RGS12O14924 1447 aa10.65□□□□□ -0.7
SNX1-202ENST00000380285 KRT28Q7Z3Y7 464 aa10.65□□□□□ -0.7
SNX1-202ENST00000380285 NUTM2BA6NNL0 878 aaPredicted RBP10.65□□□□□ -0.7
SNX1-202ENST00000380285 NUTM2EB1AL46 878 aaPredicted RBP10.65□□□□□ -0.7
SNX1-202ENST00000380285 TCP1P17987 556 aaKnown RBP10.65□□□□□ -0.7
SNX1-202ENST00000380285 NLRP3Q96P20 1036 aa10.65□□□□□ -0.7
SNX1-202ENST00000380285 DENND2AQ9ULE3 1009 aa10.65□□□□□ -0.7
SNX1-202ENST00000380285 PTPRKQ15262 1439 aa10.65□□□□□ -0.71
SNX1-202ENST00000380285 PER1O15534 1290 aaPredicted RBP10.65□□□□□ -0.71
SNX1-202ENST00000380285 ETF1P62495 437 aaKnown RBP10.65□□□□□ -0.71
SNX1-202ENST00000380285 VPS16Q9H269 839 aa10.65□□□□□ -0.71
SNX1-202ENST00000380285 WDR62O43379 1518 aa10.64□□□□□ -0.71
SNX1-202ENST00000380285 EVI5O60447 810 aa10.64□□□□□ -0.71
SNX1-202ENST00000380285 MAGEA1P43355 309 aa10.64□□□□□ -0.71
SNX1-202ENST00000380285 TFCP2Q12800 502 aa10.64□□□□□ -0.71
SNX1-202ENST00000380285 MCTP2Q6DN12 878 aa10.64□□□□□ -0.71
SNX1-202ENST00000380285 Q9H521 79 aa10.64□□□□□ -0.71
SNX1-202ENST00000380285 FAM114A2Q9NRY5 505 aa10.64□□□□□ -0.71
SNX1-202ENST00000380285 DCAF17Q5H9S7 520 aaPredicted RBP10.64□□□□□ -0.71
SNX1-202ENST00000380285 HHATQ5VTY9 493 aa10.64□□□□□ -0.71
SNX1-202ENST00000380285 KRT25Q7Z3Z0 450 aa10.64□□□□□ -0.71
SNX1-202ENST00000380285 RGS22Q8NE09 1264 aa10.64□□□□□ -0.71
SNX1-202ENST00000380285 ZNF274Q96GC6 653 aaPredicted RBP10.64□□□□□ -0.71
SNX1-202ENST00000380285 IFIH1Q9BYX4 1025 aaKnown RBP10.64□□□□□ -0.71
SNX1-202ENST00000380285 DDX21Q9NR30 783 aaKnown RBP eCLIP10.64□□□□□ -0.71
SNX1-202ENST00000380285 E7EVH7 732 aa10.64□□□□□ -0.71
SNX1-202ENST00000380285 ITIH3Q06033 890 aa10.64□□□□□ -0.71
SNX1-202ENST00000380285 SFMBT2Q5VUG0 894 aa10.64□□□□□ -0.71
SNX1-202ENST00000380285 LRRC8AQ8IWT6 810 aa10.64□□□□□ -0.71
SNX1-202ENST00000380285 HAUS4Q9H6D7 363 aa10.64□□□□□ -0.71
SNX1-202ENST00000380285 SERPINA10Q9UK55 444 aa10.64□□□□□ -0.71
SNX1-202ENST00000380285 TTC38Q5R3I4 469 aa10.64□□□□□ -0.71
SNX1-202ENST00000380285 SDCCAG8Q86SQ7 713 aaPredicted RBP10.64□□□□□ -0.71
SNX1-202ENST00000380285 NBPF5PQ86XG9 351 aaPredicted RBP10.64□□□□□ -0.71
SNX1-202ENST00000380285 EFCAB13Q8IY85 973 aa10.64□□□□□ -0.71
SNX1-202ENST00000380285 ARHGEF2Q92974 986 aaKnown RBP10.64□□□□□ -0.71
SNX1-202ENST00000380285 ATP2A3Q93084 1043 aa10.64□□□□□ -0.71
SNX1-202ENST00000380285 AGTPBP1Q9UPW5 1226 aa10.64□□□□□ -0.71
SNX1-202ENST00000380285 NBPF14Q5TI25 921 aa10.64□□□□□ -0.71
SNX1-202ENST00000380285 RNF168Q8IYW5 571 aaPredicted RBP10.64□□□□□ -0.71
SNX1-202ENST00000380285 OR8K1Q8NGG5 319 aa10.64□□□□□ -0.71
SNX1-202ENST00000380285 BICC1Q9H694 974 aaKnown RBP10.64□□□□□ -0.71
SNX1-202ENST00000380285 VCX3AQ9NNX9 186 aa10.64□□□□□ -0.71
SNX1-202ENST00000380285 HIP1RO75146 1068 aa10.64□□□□□ -0.71
SNX1-202ENST00000380285 TROVE2P10155 538 aaKnown RBP eCLIP10.64□□□□□ -0.71
SNX1-202ENST00000380285 GRK7Q8WTQ7 553 aa10.64□□□□□ -0.71
SNX1-202ENST00000380285 SH2D4AQ9H788 454 aa10.64□□□□□ -0.71
SNX1-202ENST00000380285 FAM204AQ9H8W3 233 aa10.64□□□□□ -0.71
SNX1-202ENST00000380285 TNNI2P48788 182 aa10.63□□□□□ -0.71
SNX1-202ENST00000380285 ZCRB1Q8TBF4 217 aaKnown RBP10.63□□□□□ -0.71
SNX1-202ENST00000380285 ADGRL2O95490 1459 aa10.63□□□□□ -0.71
SNX1-202ENST00000380285 KBTBD3Q8NAB2 608 aa10.63□□□□□ -0.71
SNX1-202ENST00000380285 MAGEF1Q9HAY2 307 aa10.63□□□□□ -0.71
SNX1-202ENST00000380285 HAUS2Q9NVX0 235 aa10.63□□□□□ -0.71
SNX1-202ENST00000380285 TMEM63CQ9P1W3 806 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 92.5 ms