RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 ZBTB12Q9Y330 459 aaPredicted RBP21.97■■□□□ 1.11
CLN3-204ENST00000357857 DICER1Q9UPY3 1922 aaKnown RBP21.96■■□□□ 1.11
CLN3-204ENST00000357857 KLF18A0A0U1RQI7 1052 aa21.96■■□□□ 1.11
CLN3-204ENST00000357857 RANBP6O60518 1105 aaKnown RBP21.96■■□□□ 1.11
CLN3-204ENST00000357857 PDIA3P30101 505 aaKnown RBP21.96■■□□□ 1.11
CLN3-204ENST00000357857 PLCD1P51178 756 aa21.96■■□□□ 1.11
CLN3-204ENST00000357857 LY9Q9HBG7 655 aa21.96■■□□□ 1.11
CLN3-204ENST00000357857 DDX4Q9NQI0 724 aaKnown RBP21.96■■□□□ 1.11
CLN3-204ENST00000357857 BRPF3Q9ULD4 1205 aa21.96■■□□□ 1.11
CLN3-204ENST00000357857 NUCB2P80303 420 aa21.95■■□□□ 1.1
CLN3-204ENST00000357857 TNIP1Q15025 636 aa21.95■■□□□ 1.1
CLN3-204ENST00000357857 OGFOD1Q8N543 542 aa21.95■■□□□ 1.1
CLN3-204ENST00000357857 DYNLL2Q96FJ2 89 aa21.95■■□□□ 1.1
CLN3-204ENST00000357857 SYT17Q9BSW7 474 aa21.95■■□□□ 1.1
CLN3-204ENST00000357857 ERICH2A1L162 156 aa21.94■■□□□ 1.1
CLN3-204ENST00000357857 LIFRP42702 1097 aa21.94■■□□□ 1.1
CLN3-204ENST00000357857 NT5C2P49902 561 aa21.94■■□□□ 1.1
CLN3-204ENST00000357857 PRELPP51888 382 aa21.94■■□□□ 1.1
CLN3-204ENST00000357857 SCRN1Q12765 414 aa21.94■■□□□ 1.1
CLN3-204ENST00000357857 ZKSCAN3Q9BRR0 538 aa21.94■■□□□ 1.1
CLN3-204ENST00000357857 UBAC1Q9BSL1 405 aa21.94■■□□□ 1.1
CLN3-204ENST00000357857 MYH8P13535 1937 aa21.94■■□□□ 1.1
CLN3-204ENST00000357857 RAB3GAP1Q15042 981 aa21.94■■□□□ 1.1
CLN3-204ENST00000357857 SGMS1Q86VZ5 419 aa21.94■■□□□ 1.1
CLN3-204ENST00000357857 CHMP4CQ96CF2 233 aa21.94■■□□□ 1.1
CLN3-204ENST00000357857 OSBPL5Q9H0X9 879 aaPredicted RBP21.94■■□□□ 1.1
CLN3-204ENST00000357857 GOLGB1Q14789 3259 aaKnown RBP21.93■■□□□ 1.1
CLN3-204ENST00000357857 GOLGA8BA8MQT2 603 aa21.93■■□□□ 1.1
CLN3-204ENST00000357857 WTAPQ15007 396 aa21.93■■□□□ 1.1
CLN3-204ENST00000357857 NFXL1Q6ZNB6 911 aa21.93■■□□□ 1.1
CLN3-204ENST00000357857 ARHGAP27Q6ZUM4 889 aa21.93■■□□□ 1.1
CLN3-204ENST00000357857 TTC6Q86TZ1 520 aa21.93■■□□□ 1.1
CLN3-204ENST00000357857 IQCA1Q86XH1 822 aa21.93■■□□□ 1.1
CLN3-204ENST00000357857 IDI2Q9BXS1 227 aa21.93■■□□□ 1.1
CLN3-204ENST00000357857 MKNK2Q9HBH9 465 aa21.93■■□□□ 1.1
CLN3-204ENST00000357857 ZNF287Q9HBT7 754 aa21.93■■□□□ 1.1
CLN3-204ENST00000357857 SENP2Q9HC62 589 aa21.93■■□□□ 1.1
CLN3-204ENST00000357857 SBF1O95248 1867 aa21.93■■□□□ 1.1
CLN3-204ENST00000357857 GJB2P29033 226 aa21.92■■□□□ 1.1
CLN3-204ENST00000357857 CCT2P78371 535 aaKnown RBP21.92■■□□□ 1.1
CLN3-204ENST00000357857 NFIAQ12857 509 aa21.92■■□□□ 1.1
CLN3-204ENST00000357857 C16orf86Q6ZW13 317 aa21.92■■□□□ 1.1
CLN3-204ENST00000357857 PRMT6Q96LA8 375 aaPredicted RBP21.92■■□□□ 1.1
CLN3-204ENST00000357857 CCDC69A6NI79 296 aa21.92■■□□□ 1.1
CLN3-204ENST00000357857 FZD9O00144 591 aa21.92■■□□□ 1.1
CLN3-204ENST00000357857 NPM3O75607 178 aaKnown RBP21.92■■□□□ 1.1
CLN3-204ENST00000357857 EIF6P56537 245 aaKnown RBP21.92■■□□□ 1.1
CLN3-204ENST00000357857 DLGAP5Q15398 846 aa21.92■■□□□ 1.1
CLN3-204ENST00000357857 TMTC2Q8N394 836 aa21.92■■□□□ 1.1
CLN3-204ENST00000357857 ZSCAN10Q96SZ4 725 aaPredicted RBP21.92■■□□□ 1.1
CLN3-204ENST00000357857 LLPHQ9BRT6 129 aaKnown RBP21.92■■□□□ 1.1
CLN3-204ENST00000357857 TDRD3Q9H7E2 651 aaKnown RBP21.92■■□□□ 1.1
CLN3-204ENST00000357857 HPS5Q9UPZ3 1129 aa21.92■■□□□ 1.1
CLN3-204ENST00000357857 TNKSO95271 1327 aa21.91■■□□□ 1.1
CLN3-204ENST00000357857 SPDYE2BA6NHP3 402 aa21.91■■□□□ 1.1
CLN3-204ENST00000357857 TSPY2A6NKD2 308 aa21.91■■□□□ 1.1
CLN3-204ENST00000357857 SPDYE6P0CI01 402 aa21.91■■□□□ 1.1
CLN3-204ENST00000357857 CACNB3P54284 484 aa21.91■■□□□ 1.1
CLN3-204ENST00000357857 SEC23AQ15436 765 aa21.91■■□□□ 1.1
CLN3-204ENST00000357857 FAM47AQ5JRC9 791 aa21.91■■□□□ 1.1
CLN3-204ENST00000357857 APOA5Q6Q788 366 aa21.91■■□□□ 1.1
CLN3-204ENST00000357857 SLC44A5Q8NCS7 719 aa21.91■■□□□ 1.1
CLN3-204ENST00000357857 RPS12P25398 132 aaKnown RBP21.9■■□□□ 1.1
CLN3-204ENST00000357857 CDK8P49336 464 aa21.9■■□□□ 1.1
CLN3-204ENST00000357857 PKP1Q13835 747 aa21.9■■□□□ 1.1
CLN3-204ENST00000357857 NCOA5Q9HCD5 579 aaKnown RBP21.9■■□□□ 1.1
CLN3-204ENST00000357857 FAM198AQ9UFP1 575 aa21.9■■□□□ 1.1
CLN3-204ENST00000357857 ZNF444Q8N0Y2 327 aaPredicted RBP21.89■■□□□ 1.1
CLN3-204ENST00000357857 MTMR14Q8NCE2 650 aa21.89■■□□□ 1.1
CLN3-204ENST00000357857 SLC12A7Q9Y666 1083 aa21.89■■□□□ 1.1
CLN3-204ENST00000357857 ZBTB43O43298 467 aa21.89■■□□□ 1.09
CLN3-204ENST00000357857 DTNBO60941 627 aa21.89■■□□□ 1.09
CLN3-204ENST00000357857 HLA-DOAP06340 250 aa21.89■■□□□ 1.09
CLN3-204ENST00000357857 MMP14P50281 582 aa21.89■■□□□ 1.09
CLN3-204ENST00000357857 SYNE3Q6ZMZ3 975 aa21.89■■□□□ 1.09
CLN3-204ENST00000357857 RAB11FIP4Q86YS3 637 aa21.89■■□□□ 1.09
CLN3-204ENST00000357857 ENAHQ8N8S7 591 aaPredicted RBP21.89■■□□□ 1.09
CLN3-204ENST00000357857 TMOD2Q9NZR1 351 aa21.89■■□□□ 1.09
CLN3-204ENST00000357857 SIPA1L1O43166 1804 aa21.88■■□□□ 1.09
CLN3-204ENST00000357857 DHX16O60231 1041 aaKnown RBP21.88■■□□□ 1.09
CLN3-204ENST00000357857 LMNB1P20700 586 aa21.88■■□□□ 1.09
CLN3-204ENST00000357857 RASA1P20936 1047 aa21.88■■□□□ 1.09
CLN3-204ENST00000357857 METAP2P50579 478 aaKnown RBP eCLIP21.88■■□□□ 1.09
CLN3-204ENST00000357857 TFAP4Q01664 338 aa21.88■■□□□ 1.09
CLN3-204ENST00000357857 TCP10Q12799 353 aa21.88■■□□□ 1.09
CLN3-204ENST00000357857 NSUN7Q8NE18 718 aaKnown RBP21.88■■□□□ 1.09
CLN3-204ENST00000357857 SMARCC2Q8TAQ2 1214 aa21.88■■□□□ 1.09
CLN3-204ENST00000357857 TNPO1Q92973 898 aaKnown RBP21.88■■□□□ 1.09
CLN3-204ENST00000357857 DHX36Q9H2U1 1008 aaKnown RBP21.88■■□□□ 1.09
CLN3-204ENST00000357857 JAK2O60674 1132 aa21.87■■□□□ 1.09
CLN3-204ENST00000357857 ENTPD3O75355 529 aa21.87■■□□□ 1.09
CLN3-204ENST00000357857 CTDNEP1O95476 244 aa21.87■■□□□ 1.09
CLN3-204ENST00000357857 GABPAQ06546 454 aa21.87■■□□□ 1.09
CLN3-204ENST00000357857 IFIT1BQ5T764 474 aaKnown RBP21.87■■□□□ 1.09
CLN3-204ENST00000357857 MICU3Q86XE3 530 aa21.87■■□□□ 1.09
CLN3-204ENST00000357857 ZFPM1Q8IX07 1006 aa21.87■■□□□ 1.09
CLN3-204ENST00000357857 TSPY3P0CV98 308 aa21.86■■□□□ 1.09
CLN3-204ENST00000357857 TSPY8P0CW00 308 aa21.86■■□□□ 1.09
CLN3-204ENST00000357857 ZNF70Q9UC06 446 aaPredicted RBP21.86■■□□□ 1.09
CLN3-204ENST00000357857 SWAP70Q9UH65 585 aa21.86■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms