RNA–Protein interactions for RNA: ENST00000355480.9

COL18A1-202, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL18A1, Length 5,924 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-202ENST00000355480 SNX29Q8TEQ0 813 aa20.15■□□□□ 0.82
COL18A1-202ENST00000355480 MYL10Q9BUA6 226 aa20.15■□□□□ 0.82
COL18A1-202ENST00000355480 CSRNP2Q9H175 543 aa20.15■□□□□ 0.82
COL18A1-202ENST00000355480 LRWD1Q9UFC0 647 aa20.15■□□□□ 0.82
COL18A1-202ENST00000355480 SH3BP5O60239 455 aa20.15■□□□□ 0.82
COL18A1-202ENST00000355480 ERCC5P28715 1186 aaPredicted RBP20.15■□□□□ 0.82
COL18A1-202ENST00000355480 LIN9Q5TKA1 542 aa20.15■□□□□ 0.82
COL18A1-202ENST00000355480 LLPHQ9BRT6 129 aaKnown RBP20.15■□□□□ 0.82
COL18A1-202ENST00000355480 MROH5Q6ZUA9 1318 aa20.15■□□□□ 0.82
COL18A1-202ENST00000355480 UAP1Q16222 522 aaPredicted RBP20.14■□□□□ 0.82
COL18A1-202ENST00000355480 PPP1R21Q6ZMI0 780 aa20.14■□□□□ 0.82
COL18A1-202ENST00000355480 TGFBRAP1Q8WUH2 860 aa20.14■□□□□ 0.82
COL18A1-202ENST00000355480 STK24Q9Y6E0 443 aa20.14■□□□□ 0.82
COL18A1-202ENST00000355480 POLR2DO15514 142 aaKnown RBP20.14■□□□□ 0.81
COL18A1-202ENST00000355480 DNAJC21Q5F1R6 531 aaKnown RBP20.14■□□□□ 0.81
COL18A1-202ENST00000355480 KRT25Q7Z3Z0 450 aa20.14■□□□□ 0.81
COL18A1-202ENST00000355480 CDAN1Q8IWY9 1227 aa20.14■□□□□ 0.81
COL18A1-202ENST00000355480 SMC1BQ8NDV3 1235 aa20.14■□□□□ 0.81
COL18A1-202ENST00000355480 CCDC26Q8TAB7 109 aa20.14■□□□□ 0.81
COL18A1-202ENST00000355480 IPO4Q8TEX9 1081 aaKnown RBP20.14■□□□□ 0.81
COL18A1-202ENST00000355480 UBLCP1Q8WVY7 318 aaPredicted RBP20.14■□□□□ 0.81
COL18A1-202ENST00000355480 ANAPC4Q9UJX5 808 aa20.14■□□□□ 0.81
COL18A1-202ENST00000355480 USP19O94966 1318 aa20.14■□□□□ 0.81
COL18A1-202ENST00000355480 DAPK3O43293 454 aa20.14■□□□□ 0.81
COL18A1-202ENST00000355480 KBTBD3Q8NAB2 608 aa20.14■□□□□ 0.81
COL18A1-202ENST00000355480 CFBP00751 764 aa20.14■□□□□ 0.81
COL18A1-202ENST00000355480 ASIC2Q16515 512 aa20.14■□□□□ 0.81
COL18A1-202ENST00000355480 NOX5Q96PH1 765 aa20.14■□□□□ 0.81
COL18A1-202ENST00000355480 UIMC1Q96RL1 719 aa20.14■□□□□ 0.81
COL18A1-202ENST00000355480 ALDH3A1P30838 453 aa20.13■□□□□ 0.81
COL18A1-202ENST00000355480 CPLX4Q7Z7G2 160 aa20.13■□□□□ 0.81
COL18A1-202ENST00000355480 TRIM7Q9C029 511 aa20.13■□□□□ 0.81
COL18A1-202ENST00000355480 SNX14Q9Y5W7 946 aa20.13■□□□□ 0.81
COL18A1-202ENST00000355480 APBA3O96018 575 aa20.13■□□□□ 0.81
COL18A1-202ENST00000355480 MNAT1P51948 309 aa20.13■□□□□ 0.81
COL18A1-202ENST00000355480 DLGAP5Q15398 846 aa20.13■□□□□ 0.81
COL18A1-202ENST00000355480 ZEB2O60315 1214 aa20.13■□□□□ 0.81
COL18A1-202ENST00000355480 IVLP07476 585 aa20.13■□□□□ 0.81
COL18A1-202ENST00000355480 NAP1L3Q99457 506 aaPredicted RBP20.13■□□□□ 0.81
COL18A1-202ENST00000355480 DNM3Q9UQ16 869 aa20.13■□□□□ 0.81
COL18A1-202ENST00000355480 ZNF532Q9HCE3 1301 aa20.13■□□□□ 0.81
COL18A1-202ENST00000355480 GCKRQ14397 625 aa20.13■□□□□ 0.81
COL18A1-202ENST00000355480 OTUD7BQ6GQQ9 843 aa20.13■□□□□ 0.81
COL18A1-202ENST00000355480 HAUS7Q99871 368 aa20.13■□□□□ 0.81
COL18A1-202ENST00000355480 USP21Q9UK80 565 aa20.13■□□□□ 0.81
COL18A1-202ENST00000355480 NDUFB9Q9Y6M9 179 aa20.13■□□□□ 0.81
COL18A1-202ENST00000355480 TRIM14Q14142 442 aa20.12■□□□□ 0.81
COL18A1-202ENST00000355480 CCDC121Q6ZUS5 278 aa20.12■□□□□ 0.81
COL18A1-202ENST00000355480 GPR161Q8N6U8 529 aaKnown RBP20.12■□□□□ 0.81
COL18A1-202ENST00000355480 EDC4Q6P2E9 1401 aaKnown RBP20.12■□□□□ 0.81
COL18A1-202ENST00000355480 IBTKQ9P2D0 1353 aaPredicted RBP20.12■□□□□ 0.81
COL18A1-202ENST00000355480 ZAP70P43403 619 aa20.12■□□□□ 0.81
COL18A1-202ENST00000355480 HERC4Q5GLZ8 1057 aaPredicted RBP20.12■□□□□ 0.81
COL18A1-202ENST00000355480 ALDH1B1P30837 517 aa20.12■□□□□ 0.81
COL18A1-202ENST00000355480 SYNRGQ9UMZ2 1314 aa20.12■□□□□ 0.81
COL18A1-202ENST00000355480 UHRF1BP1Q6BDS2 1440 aa20.12■□□□□ 0.81
COL18A1-202ENST00000355480 CUTAO60888 179 aa20.12■□□□□ 0.81
COL18A1-202ENST00000355480 IRX3P78415 501 aaPredicted RBP20.12■□□□□ 0.81
COL18A1-202ENST00000355480 MYCT1Q8N699 235 aa20.12■□□□□ 0.81
COL18A1-202ENST00000355480 ARFGAP2Q8N6H7 521 aa20.12■□□□□ 0.81
COL18A1-202ENST00000355480 BEGAINQ9BUH8 593 aa20.12■□□□□ 0.81
COL18A1-202ENST00000355480 DNM2P50570 870 aa20.11■□□□□ 0.81
COL18A1-202ENST00000355480 PAK1Q13153 545 aa20.11■□□□□ 0.81
COL18A1-202ENST00000355480 CAPN2P17655 700 aa20.11■□□□□ 0.81
COL18A1-202ENST00000355480 DYMQ7RTS9 669 aa20.11■□□□□ 0.81
COL18A1-202ENST00000355480 PHKBQ93100 1093 aa20.11■□□□□ 0.81
COL18A1-202ENST00000355480 LZTS2Q9BRK4 669 aa20.11■□□□□ 0.81
COL18A1-202ENST00000355480 CALCRLQ16602 461 aa20.11■□□□□ 0.81
COL18A1-202ENST00000355480 TBC1D22AQ8WUA7 517 aa20.11■□□□□ 0.81
COL18A1-202ENST00000355480 PPIP5K2O43314 1243 aa20.11■□□□□ 0.81
COL18A1-202ENST00000355480 DDX17Q92841 729 aaKnown RBP20.11■□□□□ 0.81
COL18A1-202ENST00000355480 TBC1D7Q9P0N9 293 aa20.11■□□□□ 0.81
COL18A1-202ENST00000355480 VPS18Q9P253 973 aa20.11■□□□□ 0.81
COL18A1-202ENST00000355480 AOX1Q06278 1338 aa20.11■□□□□ 0.81
COL18A1-202ENST00000355480 GEN1Q17RS7 908 aa20.11■□□□□ 0.81
COL18A1-202ENST00000355480 CHL1O00533 1208 aa20.1■□□□□ 0.81
COL18A1-202ENST00000355480 TFAP4Q01664 338 aa20.1■□□□□ 0.81
COL18A1-202ENST00000355480 CCT6BQ92526 530 aa20.1■□□□□ 0.81
COL18A1-202ENST00000355480 UTP18Q9Y5J1 556 aaKnown RBP eCLIP20.1■□□□□ 0.814e-6■■■■□ 20.2
COL18A1-202ENST00000355480 M0QZ92 97 aa20.09■□□□□ 0.81
COL18A1-202ENST00000355480 TCIRG1Q13488 830 aa20.09■□□□□ 0.81
COL18A1-202ENST00000355480 SEC62Q99442 399 aaKnown RBP20.09■□□□□ 0.81
COL18A1-202ENST00000355480 NACA2Q9H009 215 aa20.09■□□□□ 0.81
COL18A1-202ENST00000355480 CRCPO75575 148 aa20.09■□□□□ 0.81
COL18A1-202ENST00000355480 ARID4AP29374 1257 aaPredicted RBP20.09■□□□□ 0.81
COL18A1-202ENST00000355480 RAD51AP2Q09MP3 1159 aa20.09■□□□□ 0.81
COL18A1-202ENST00000355480 CYP26C1Q6V0L0 522 aa20.09■□□□□ 0.81
COL18A1-202ENST00000355480 EXOC3O60645 756 aa20.09■□□□□ 0.81
COL18A1-202ENST00000355480 KRT19P08727 400 aa20.09■□□□□ 0.81
COL18A1-202ENST00000355480 PPP2R5BQ15173 497 aa20.09■□□□□ 0.81
COL18A1-202ENST00000355480 SMCR8Q8TEV9 937 aaPredicted RBP20.09■□□□□ 0.81
COL18A1-202ENST00000355480 ZNF496Q96IT1 587 aaPredicted RBP20.09■□□□□ 0.81
COL18A1-202ENST00000355480 SAMD15Q9P1V8 674 aa20.09■□□□□ 0.81
COL18A1-202ENST00000355480 ARHGEF10O15013 1369 aa20.09■□□□□ 0.81
COL18A1-202ENST00000355480 EAPPQ56P03 285 aaPredicted RBP20.09■□□□□ 0.81
COL18A1-202ENST00000355480 RNASE9P60153 205 aaKnown RBP20.09■□□□□ 0.81
COL18A1-202ENST00000355480 SETDB1Q15047 1291 aa20.09■□□□□ 0.81
COL18A1-202ENST00000355480 ZNF365Q70YC5 407 aa20.09■□□□□ 0.81
COL18A1-202ENST00000355480 NKIRAS1Q9NYS0 192 aa20.09■□□□□ 0.81
COL18A1-202ENST00000355480 SGSM2O43147 1006 aa20.08■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms