RNA–Protein interactions for RNA: ENST00000354193.4

SVIP-201, Transcript of small VCP interacting protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SVIP, Length 4,541 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SVIP-201ENST00000354193 A0A087WWV3 80 aa12.86□□□□□ -0.35
SVIP-201ENST00000354193 A0A1B0GVL5 298 aa12.86□□□□□ -0.35
SVIP-201ENST00000354193 EXOSC10Q01780 885 aaKnown RBP12.86□□□□□ -0.35
SVIP-201ENST00000354193 KRT40Q6A162 431 aa12.86□□□□□ -0.35
SVIP-201ENST00000354193 BRMS1Q9HCU9 246 aa12.86□□□□□ -0.35
SVIP-201ENST00000354193 CTR9Q6PD62 1173 aa12.86□□□□□ -0.35
SVIP-201ENST00000354193 HEATR3Q7Z4Q2 680 aa12.86□□□□□ -0.35
SVIP-201ENST00000354193 CCAR1Q8IX12 1150 aaKnown RBP12.86□□□□□ -0.35
SVIP-201ENST00000354193 NKX2-3Q8TAU0 364 aa12.86□□□□□ -0.35
SVIP-201ENST00000354193 SH2B2O14492 632 aaPredicted RBP12.85□□□□□ -0.35
SVIP-201ENST00000354193 SRGNP10124 158 aa12.85□□□□□ -0.35
SVIP-201ENST00000354193 ZYXQ15942 572 aaKnown RBP12.85□□□□□ -0.35
SVIP-201ENST00000354193 ZSCAN10Q96SZ4 725 aaPredicted RBP12.85□□□□□ -0.35
SVIP-201ENST00000354193 PLCH1Q4KWH8 1693 aa12.85□□□□□ -0.35
SVIP-201ENST00000354193 RPAP1Q9BWH6 1393 aaPredicted RBP12.85□□□□□ -0.35
SVIP-201ENST00000354193 TCRBV5S4A2TA0A5A2 114 aa12.85□□□□□ -0.35
SVIP-201ENST00000354193 BTBD18B2RXH4 712 aa12.85□□□□□ -0.35
SVIP-201ENST00000354193 LIG1P18858 919 aa12.85□□□□□ -0.35
SVIP-201ENST00000354193 LRRC47Q8N1G4 583 aaKnown RBP12.85□□□□□ -0.35
SVIP-201ENST00000354193 FANCBQ8NB91 859 aa12.85□□□□□ -0.35
SVIP-201ENST00000354193 CNKSR1Q969H4 720 aa12.85□□□□□ -0.35
SVIP-201ENST00000354193 GPCPD1Q9NPB8 672 aa12.85□□□□□ -0.35
SVIP-201ENST00000354193 HLA-DOAP06340 250 aa12.85□□□□□ -0.35
SVIP-201ENST00000354193 TMTC2Q8N394 836 aa12.85□□□□□ -0.35
SVIP-201ENST00000354193 SPC24Q8NBT2 197 aa12.85□□□□□ -0.35
SVIP-201ENST00000354193 LEO1Q8WVC0 666 aaPredicted RBP12.85□□□□□ -0.35
SVIP-201ENST00000354193 TEKT1Q969V4 418 aa12.85□□□□□ -0.35
SVIP-201ENST00000354193 ZNF287Q9HBT7 754 aa12.85□□□□□ -0.35
SVIP-201ENST00000354193 ZBTB12Q9Y330 459 aaPredicted RBP12.85□□□□□ -0.35
SVIP-201ENST00000354193 TCP10L2B9ZVM9 353 aa12.84□□□□□ -0.35
SVIP-201ENST00000354193 SEMA3EO15041 775 aa12.84□□□□□ -0.35
SVIP-201ENST00000354193 DDIT3P35638 169 aa12.84□□□□□ -0.35
SVIP-201ENST00000354193 DNTTIP2Q5QJE6 756 aaKnown RBP12.84□□□□□ -0.35
SVIP-201ENST00000354193 CABP5Q9NP86 173 aa12.84□□□□□ -0.35
SVIP-201ENST00000354193 TSGA10IPQ3SY00 556 aa12.84□□□□□ -0.35
SVIP-201ENST00000354193 DIS3L2Q8IYB7 885 aaKnown RBP12.84□□□□□ -0.35
SVIP-201ENST00000354193 TBC1D22AQ8WUA7 517 aa12.84□□□□□ -0.35
SVIP-201ENST00000354193 ZNF512BQ96KM6 892 aaPredicted RBP12.84□□□□□ -0.35
SVIP-201ENST00000354193 ZSCAN16Q9H4T2 348 aaPredicted RBP12.84□□□□□ -0.35
SVIP-201ENST00000354193 ATP6V0A2Q9Y487 856 aa12.84□□□□□ -0.35
SVIP-201ENST00000354193 ABCA3Q99758 1704 aa12.84□□□□□ -0.35
SVIP-201ENST00000354193 PLSCR1O15162 318 aa12.84□□□□□ -0.35
SVIP-201ENST00000354193 FOXP2O15409 715 aa12.84□□□□□ -0.35
SVIP-201ENST00000354193 PLCD1P51178 756 aa12.84□□□□□ -0.35
SVIP-201ENST00000354193 JDP2Q8WYK2 163 aa12.84□□□□□ -0.35
SVIP-201ENST00000354193 UBA5Q9GZZ9 404 aa12.84□□□□□ -0.35
SVIP-201ENST00000354193 GOLGA6L19H0YKK7 550 aa12.83□□□□□ -0.35
SVIP-201ENST00000354193 UTRNP46939 3433 aa12.83□□□□□ -0.36
SVIP-201ENST00000354193 CCDC183Q5T5S1 534 aa12.83□□□□□ -0.36
SVIP-201ENST00000354193 GPKOWQ92917 476 aaPredicted RBP eCLIP12.83□□□□□ -0.36
SVIP-201ENST00000354193 ATP8A2Q9NTI2 1148 aa12.83□□□□□ -0.36
SVIP-201ENST00000354193 PLEKHA8P1O95397 391 aa12.83□□□□□ -0.36
SVIP-201ENST00000354193 NR5A1Q13285 461 aa12.83□□□□□ -0.36
SVIP-201ENST00000354193 DHX8Q14562 1220 aaKnown RBP12.83□□□□□ -0.36
SVIP-201ENST00000354193 MAP3K11Q16584 847 aa12.83□□□□□ -0.36
SVIP-201ENST00000354193 WASF1Q92558 559 aa12.83□□□□□ -0.36
SVIP-201ENST00000354193 CTDNEP1O95476 244 aa12.83□□□□□ -0.36
SVIP-201ENST00000354193 PLCG2P16885 1265 aa12.83□□□□□ -0.36
SVIP-201ENST00000354193 SP8Q8IXZ3 490 aa12.83□□□□□ -0.36
SVIP-201ENST00000354193 PNMA1Q8ND90 353 aa12.83□□□□□ -0.36
SVIP-201ENST00000354193 TDRD7Q8NHU6 1098 aaKnown RBP12.83□□□□□ -0.36
SVIP-201ENST00000354193 RIOK1Q9BRS2 568 aaKnown RBP12.83□□□□□ -0.36
SVIP-201ENST00000354193 LY9Q9HBG7 655 aa12.83□□□□□ -0.36
SVIP-201ENST00000354193 ARPP21Q9UBL0 812 aaPredicted RBP12.83□□□□□ -0.36
SVIP-201ENST00000354193 USP25Q9UHP3 1055 aa12.83□□□□□ -0.36
SVIP-201ENST00000354193 SIPA1L3O60292 1781 aaPredicted RBP12.82□□□□□ -0.36
SVIP-201ENST00000354193 GUCY1A2P33402 732 aa12.82□□□□□ -0.36
SVIP-201ENST00000354193 TTLL6Q8N841 843 aa12.82□□□□□ -0.36
SVIP-201ENST00000354193 ENAHQ8N8S7 591 aaPredicted RBP12.82□□□□□ -0.36
SVIP-201ENST00000354193 LLPHQ9BRT6 129 aaKnown RBP12.82□□□□□ -0.36
SVIP-201ENST00000354193 TDRD3Q9H7E2 651 aaKnown RBP12.82□□□□□ -0.36
SVIP-201ENST00000354193 CLIP2Q9UDT6 1046 aa12.82□□□□□ -0.36
SVIP-201ENST00000354193 FRMPD2Q68DX3 1309 aaPredicted RBP12.82□□□□□ -0.36
SVIP-201ENST00000354193 PNPLA7Q6ZV29 1317 aa12.82□□□□□ -0.36
SVIP-201ENST00000354193 SOGA3Q5TF21 947 aa12.82□□□□□ -0.36
SVIP-201ENST00000354193 CRAMP1Q96RY5 1269 aa12.82□□□□□ -0.36
SVIP-201ENST00000354193 ATRNO75882 1429 aa12.82□□□□□ -0.36
SVIP-201ENST00000354193 RFX7Q2KHR2 1363 aa12.82□□□□□ -0.36
SVIP-201ENST00000354193 PRKG1Q13976 671 aa12.82□□□□□ -0.36
SVIP-201ENST00000354193 FBXO18Q8NFZ0 1043 aa12.82□□□□□ -0.36
SVIP-201ENST00000354193 PCDHAC2Q9Y5I4 1007 aa12.82□□□□□ -0.36
SVIP-201ENST00000354193 KIF5BP33176 963 aa12.81□□□□□ -0.36
SVIP-201ENST00000354193 HSP90AA4PQ58FG1 418 aa12.81□□□□□ -0.36
SVIP-201ENST00000354193 NBPF3Q9H094 633 aa12.81□□□□□ -0.36
SVIP-201ENST00000354193 RBSNQ9H1K0 784 aa12.81□□□□□ -0.36
SVIP-201ENST00000354193 CRYBG1Q9Y4K1 1723 aa12.81□□□□□ -0.36
SVIP-201ENST00000354193 SPTLC2O15270 562 aa12.81□□□□□ -0.36
SVIP-201ENST00000354193 ECE2O60344 883 aa12.81□□□□□ -0.36
SVIP-201ENST00000354193 CCDC192P0DO97 292 aa12.81□□□□□ -0.36
SVIP-201ENST00000354193 COA1Q9GZY4 146 aa12.81□□□□□ -0.36
SVIP-201ENST00000354193 CLIC4Q9Y696 253 aa12.81□□□□□ -0.36
SVIP-201ENST00000354193 MSNP26038 577 aaKnown RBP12.81□□□□□ -0.36
SVIP-201ENST00000354193 KCNB2Q92953 911 aa12.81□□□□□ -0.36
SVIP-201ENST00000354193 SEC63Q9UGP8 760 aaKnown RBP12.81□□□□□ -0.36
SVIP-201ENST00000354193 ZMYM6O95789 1325 aa12.81□□□□□ -0.36
SVIP-201ENST00000354193 RASGRP4Q8TDF6 673 aa12.81□□□□□ -0.36
SVIP-201ENST00000354193 GDF11O95390 407 aa12.8□□□□□ -0.36
SVIP-201ENST00000354193 ZNF174Q15697 407 aa12.8□□□□□ -0.36
SVIP-201ENST00000354193 USP17L2Q6R6M4 530 aa12.8□□□□□ -0.36
SVIP-201ENST00000354193 IGDCC4Q8TDY8 1250 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms