RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 BSDC1Q9NW68 430 aaPredicted RBP11.96□□□□□ -0.49
LIMA1-201ENST00000341247 C4AP0C0L4 1744 aa11.96□□□□□ -0.5
LIMA1-201ENST00000341247 C4BP0C0L5 1744 aa11.96□□□□□ -0.5
LIMA1-201ENST00000341247 A0A1W2PQ27 194 aa11.96□□□□□ -0.5
LIMA1-201ENST00000341247 A0A1W2PQ64 194 aa11.96□□□□□ -0.5
LIMA1-201ENST00000341247 A0A1W2PQD8 194 aa11.96□□□□□ -0.5
LIMA1-201ENST00000341247 USP17L12C9JPN9 530 aa11.96□□□□□ -0.5
LIMA1-201ENST00000341247 USP17L21D6R901 530 aa11.96□□□□□ -0.5
LIMA1-201ENST00000341247 GRIN1Q05586 938 aa11.96□□□□□ -0.5
LIMA1-201ENST00000341247 PNOCQ13519 176 aa11.96□□□□□ -0.5
LIMA1-201ENST00000341247 SHC4Q6S5L8 630 aa11.96□□□□□ -0.5
LIMA1-201ENST00000341247 CCNL1Q9UK58 526 aaPredicted RBP11.96□□□□□ -0.5
LIMA1-201ENST00000341247 SMC2O95347 1197 aa11.95□□□□□ -0.5
LIMA1-201ENST00000341247 FAM47AQ5JRC9 791 aa11.95□□□□□ -0.5
LIMA1-201ENST00000341247 PDILTQ8N807 584 aa11.95□□□□□ -0.5
LIMA1-201ENST00000341247 CYP2D6P10635 497 aa11.95□□□□□ -0.5
LIMA1-201ENST00000341247 VPS72Q15906 364 aa11.95□□□□□ -0.5
LIMA1-201ENST00000341247 CLEC4GQ6UXB4 293 aa11.95□□□□□ -0.5
LIMA1-201ENST00000341247 FANCBQ8NB91 859 aa11.95□□□□□ -0.5
LIMA1-201ENST00000341247 PNPLA7Q6ZV29 1317 aa11.95□□□□□ -0.5
LIMA1-201ENST00000341247 TNRC6CQ9HCJ0 1690 aaKnown RBP11.95□□□□□ -0.5
LIMA1-201ENST00000341247 FAM205CA6NFA0 338 aa11.95□□□□□ -0.5
LIMA1-201ENST00000341247 FOXN1O15353 648 aa11.95□□□□□ -0.5
LIMA1-201ENST00000341247 TOM1O60784 492 aa11.95□□□□□ -0.5
LIMA1-201ENST00000341247 FMNL1O95466 1100 aaPredicted RBP11.95□□□□□ -0.5
LIMA1-201ENST00000341247 UBE4AQ14139 1066 aa11.95□□□□□ -0.5
LIMA1-201ENST00000341247 SAFBQ15424 915 aaKnown RBP eCLIP11.95□□□□□ -0.5
LIMA1-201ENST00000341247 LRRC4BQ9NT99 713 aa11.95□□□□□ -0.5
LIMA1-201ENST00000341247 VPS54Q9P1Q0 977 aa11.95□□□□□ -0.5
LIMA1-201ENST00000341247 CMA1P23946 247 aa11.94□□□□□ -0.5
LIMA1-201ENST00000341247 LMOD1P29536 600 aaPredicted RBP11.94□□□□□ -0.5
LIMA1-201ENST00000341247 SF3B3Q15393 1217 aaKnown RBP11.94□□□□□ -0.5
LIMA1-201ENST00000341247 RIOK1Q9BRS2 568 aaKnown RBP11.94□□□□□ -0.5
LIMA1-201ENST00000341247 RNF41Q9H4P4 317 aaPredicted RBP11.94□□□□□ -0.5
LIMA1-201ENST00000341247 ECM29Q5VYK3 1845 aa11.94□□□□□ -0.5
LIMA1-201ENST00000341247 FNBP4Q8N3X1 1017 aaPredicted RBP11.94□□□□□ -0.5
LIMA1-201ENST00000341247 ESR2Q92731 530 aa11.94□□□□□ -0.5
LIMA1-201ENST00000341247 CACNA1SQ13698 1873 aa11.94□□□□□ -0.5
LIMA1-201ENST00000341247 IFNAR1P17181 557 aa11.94□□□□□ -0.5
LIMA1-201ENST00000341247 AKAP17AQ02040 695 aaKnown RBP11.94□□□□□ -0.5
LIMA1-201ENST00000341247 MECOMQ03112 1051 aa11.94□□□□□ -0.5
LIMA1-201ENST00000341247 PTPAQ15257 358 aa11.94□□□□□ -0.5
LIMA1-201ENST00000341247 NAT10Q9H0A0 1025 aaKnown RBP11.94□□□□□ -0.5
LIMA1-201ENST00000341247 CABP5Q9NP86 173 aa11.94□□□□□ -0.5
LIMA1-201ENST00000341247 PLEKHA8P1O95397 391 aa11.93□□□□□ -0.5
LIMA1-201ENST00000341247 HIBADHP31937 336 aaKnown RBP11.93□□□□□ -0.5
LIMA1-201ENST00000341247 NOSTRINQ8IVI9 506 aa11.93□□□□□ -0.5
LIMA1-201ENST00000341247 ENAHQ8N8S7 591 aaPredicted RBP11.93□□□□□ -0.5
LIMA1-201ENST00000341247 ARHGEF1Q92888 912 aaKnown RBP11.93□□□□□ -0.5
LIMA1-201ENST00000341247 MAP3K14Q99558 947 aa11.93□□□□□ -0.5
LIMA1-201ENST00000341247 ANKIB1Q9P2G1 1089 aa11.93□□□□□ -0.5
LIMA1-201ENST00000341247 PCDHB6Q9Y5E3 794 aa11.93□□□□□ -0.5
LIMA1-201ENST00000341247 V9GY48 417 aaPredicted RBP11.93□□□□□ -0.5
LIMA1-201ENST00000341247 SCN7AQ01118 1682 aa11.93□□□□□ -0.5
LIMA1-201ENST00000341247 BAZ2AQ9UIF9 1905 aaKnown RBP11.93□□□□□ -0.5
LIMA1-201ENST00000341247 TPM3P06753 285 aa11.93□□□□□ -0.5
LIMA1-201ENST00000341247 LONRF3Q496Y0 759 aa11.93□□□□□ -0.5
LIMA1-201ENST00000341247 IFIT1BQ5T764 474 aaKnown RBP11.93□□□□□ -0.5
LIMA1-201ENST00000341247 CRACR2BQ8N4Y2 399 aaPredicted RBP11.93□□□□□ -0.5
LIMA1-201ENST00000341247 ZNF592Q92610 1267 aa11.93□□□□□ -0.5
LIMA1-201ENST00000341247 RTCBQ9Y3I0 505 aaKnown RBP11.93□□□□□ -0.5
LIMA1-201ENST00000341247 ZNF804BA4D1E1 1349 aa11.93□□□□□ -0.5
LIMA1-201ENST00000341247 MMP1P03956 469 aa11.93□□□□□ -0.5
LIMA1-201ENST00000341247 TOB1P50616 345 aaPredicted RBP11.93□□□□□ -0.5
LIMA1-201ENST00000341247 GRAMD1CQ8IYS0 662 aa11.93□□□□□ -0.5
LIMA1-201ENST00000341247 TRMT1Q9NXH9 659 aaKnown RBP11.93□□□□□ -0.5
LIMA1-201ENST00000341247 IFNKQ9P0W0 207 aa11.93□□□□□ -0.5
LIMA1-201ENST00000341247 USP21Q9UK80 565 aa11.93□□□□□ -0.5
LIMA1-201ENST00000341247 THSD7AQ9UPZ6 1657 aa11.92□□□□□ -0.5
LIMA1-201ENST00000341247 TPTE2Q6XPS3 522 aa11.92□□□□□ -0.5
LIMA1-201ENST00000341247 JMYQ8N9B5 988 aa11.92□□□□□ -0.5
LIMA1-201ENST00000341247 CNNM3Q8NE01 707 aa11.92□□□□□ -0.5
LIMA1-201ENST00000341247 NARFQ9UHQ1 456 aa11.92□□□□□ -0.5
LIMA1-201ENST00000341247 TAF1LQ8IZX4 1826 aa11.92□□□□□ -0.5
LIMA1-201ENST00000341247 CAVIN2O95810 425 aa11.92□□□□□ -0.5
LIMA1-201ENST00000341247 U2AF2P26368 475 aaKnown RBP eCLIP11.92□□□□□ -0.5
LIMA1-201ENST00000341247 TM4SF1P30408 202 aa11.92□□□□□ -0.5
LIMA1-201ENST00000341247 CTR9Q6PD62 1173 aa11.92□□□□□ -0.5
LIMA1-201ENST00000341247 ZSCAN10Q96SZ4 725 aaPredicted RBP11.92□□□□□ -0.5
LIMA1-201ENST00000341247 SPTLC3Q9NUV7 552 aa11.92□□□□□ -0.5
LIMA1-201ENST00000341247 CHD4Q14839 1912 aa11.92□□□□□ -0.5
LIMA1-201ENST00000341247 ATP1A3P13637 1013 aa11.91□□□□□ -0.5
LIMA1-201ENST00000341247 NOM1Q5C9Z4 860 aaKnown RBP11.91□□□□□ -0.5
LIMA1-201ENST00000341247 NSUN4Q96CB9 384 aaKnown RBP11.91□□□□□ -0.5
LIMA1-201ENST00000341247 KCNH3Q9ULD8 1083 aa11.91□□□□□ -0.5
LIMA1-201ENST00000341247 RTL9Q8NET4 1388 aa11.91□□□□□ -0.5
LIMA1-201ENST00000341247 ZNF827Q17R98 1081 aa11.91□□□□□ -0.5
LIMA1-201ENST00000341247 USP49Q70CQ1 688 aa11.91□□□□□ -0.5
LIMA1-201ENST00000341247 NBPF11Q86T75 865 aa11.91□□□□□ -0.5
LIMA1-201ENST00000341247 XPO4Q9C0E2 1151 aaKnown RBP11.91□□□□□ -0.5
LIMA1-201ENST00000341247 SBF2Q86WG5 1849 aa11.91□□□□□ -0.5
LIMA1-201ENST00000341247 RPS6KA4O75676 772 aa11.91□□□□□ -0.5
LIMA1-201ENST00000341247 DEXIO95424 95 aa11.91□□□□□ -0.5
LIMA1-201ENST00000341247 RFC4P35249 363 aa11.91□□□□□ -0.5
LIMA1-201ENST00000341247 TPD52L1Q16890 204 aaPredicted RBP11.91□□□□□ -0.5
LIMA1-201ENST00000341247 IQCA1Q86XH1 822 aa11.91□□□□□ -0.5
LIMA1-201ENST00000341247 WASF1Q92558 559 aa11.91□□□□□ -0.5
LIMA1-201ENST00000341247 CCDC196A0A1B0GTZ2 297 aa11.9□□□□□ -0.5
LIMA1-201ENST00000341247 USP27XA6NNY8 438 aa11.9□□□□□ -0.5
LIMA1-201ENST00000341247 NLRP12P59046 1061 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms