RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 TTLL4Q14679 1199 aa5.33□□□□□ -1.56
HMGB1-201ENST00000326004 PPM1JQ5JR12 505 aa5.33□□□□□ -1.56
HMGB1-201ENST00000326004 TMEM151AQ8N4L1 468 aa5.33□□□□□ -1.56
HMGB1-201ENST00000326004 SREK1Q8WXA9 508 aaKnown RBP5.33□□□□□ -1.56
HMGB1-201ENST00000326004 EHMT1Q9H9B1 1298 aa5.33□□□□□ -1.56
HMGB1-201ENST00000326004 GINM1Q9NU53 330 aa5.33□□□□□ -1.56
HMGB1-201ENST00000326004 ADAM30Q9UKF2 790 aa5.33□□□□□ -1.56
HMGB1-201ENST00000326004 EFR3BQ9Y2G0 817 aa5.33□□□□□ -1.56
HMGB1-201ENST00000326004 POLR3KQ9Y2Y1 108 aaPredicted RBP5.33□□□□□ -1.56
HMGB1-201ENST00000326004 CSADQ9Y600 493 aa5.33□□□□□ -1.56
HMGB1-201ENST00000326004 DNAJA1P31689 397 aaKnown RBP5.32□□□□□ -1.56
HMGB1-201ENST00000326004 NASPP49321 788 aaPredicted RBP5.32□□□□□ -1.56
HMGB1-201ENST00000326004 ETF1P62495 437 aaKnown RBP5.32□□□□□ -1.56
HMGB1-201ENST00000326004 TMEM201Q5SNT2 666 aa5.32□□□□□ -1.56
HMGB1-201ENST00000326004 ZNF507Q8TCN5 953 aa5.32□□□□□ -1.56
HMGB1-201ENST00000326004 UTP4Q969X6 686 aaKnown RBP5.32□□□□□ -1.56
HMGB1-201ENST00000326004 MYRFLQ96LU7 910 aa5.32□□□□□ -1.56
HMGB1-201ENST00000326004 SSBP4Q9BWG4 385 aaPredicted RBP5.32□□□□□ -1.56
HMGB1-201ENST00000326004 ACSS3Q9H6R3 686 aa5.32□□□□□ -1.56
HMGB1-201ENST00000326004 FAM105AQ9NUU6 356 aa5.32□□□□□ -1.56
HMGB1-201ENST00000326004 DHX15O43143 795 aaKnown RBP5.31□□□□□ -1.56
HMGB1-201ENST00000326004 GRIN3BO60391 1043 aa5.31□□□□□ -1.56
HMGB1-201ENST00000326004 HTR3BO95264 441 aa5.31□□□□□ -1.56
HMGB1-201ENST00000326004 PGRP06401 933 aa5.31□□□□□ -1.56
HMGB1-201ENST00000326004 NEFMP07197 916 aa5.31□□□□□ -1.56
HMGB1-201ENST00000326004 FGRP09769 529 aa5.31□□□□□ -1.56
HMGB1-201ENST00000326004 HCLS1P14317 486 aaPredicted RBP5.31□□□□□ -1.56
HMGB1-201ENST00000326004 PLCG1P19174 1290 aa5.31□□□□□ -1.56
HMGB1-201ENST00000326004 GRK4P32298 578 aa5.31□□□□□ -1.56
HMGB1-201ENST00000326004 NTF4P34130 210 aa5.31□□□□□ -1.56
HMGB1-201ENST00000326004 CAP2P40123 477 aa5.31□□□□□ -1.56
HMGB1-201ENST00000326004 LRRFIP1Q32MZ4 808 aaKnown RBP5.31□□□□□ -1.56
HMGB1-201ENST00000326004 GK5Q6ZS86 529 aa5.31□□□□□ -1.56
HMGB1-201ENST00000326004 CDC37L1Q7L3B6 337 aa5.31□□□□□ -1.56
HMGB1-201ENST00000326004 HID1Q8IV36 788 aa5.31□□□□□ -1.56
HMGB1-201ENST00000326004 FAM20CQ8IXL6 584 aa5.31□□□□□ -1.56
HMGB1-201ENST00000326004 SMYD4Q8IYR2 804 aaPredicted RBP5.31□□□□□ -1.56
HMGB1-201ENST00000326004 EZH1Q92800 747 aaPredicted RBP5.31□□□□□ -1.56
HMGB1-201ENST00000326004 FERD3LQ96RJ6 166 aa5.31□□□□□ -1.56
HMGB1-201ENST00000326004 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.31□□□□□ -1.566e-8■□□□□ 10.3
HMGB1-201ENST00000326004 TANGO6Q9C0B7 1094 aa5.31□□□□□ -1.56
HMGB1-201ENST00000326004 PRKAG2Q9UGJ0 569 aa5.31□□□□□ -1.56
HMGB1-201ENST00000326004 PCOLCE2Q9UKZ9 415 aa5.31□□□□□ -1.56
HMGB1-201ENST00000326004 ZNRF3Q9ULT6 936 aa5.31□□□□□ -1.56
HMGB1-201ENST00000326004 PCDHB14Q9Y5E9 798 aa5.31□□□□□ -1.56
HMGB1-201ENST00000326004 RNGTTO60942 597 aaKnown RBP5.3□□□□□ -1.56
HMGB1-201ENST00000326004 SSBP05455 408 aaKnown RBP eCLIP5.3□□□□□ -1.56
HMGB1-201ENST00000326004 BMP3P12645 472 aa5.3□□□□□ -1.56
HMGB1-201ENST00000326004 RAB6AP20340 208 aa5.3□□□□□ -1.56
HMGB1-201ENST00000326004 CLCQ05315 142 aa5.3□□□□□ -1.56
HMGB1-201ENST00000326004 MAP7Q14244 749 aa5.3□□□□□ -1.56
HMGB1-201ENST00000326004 PLA2G4EQ3MJ16 856 aa5.3□□□□□ -1.56
HMGB1-201ENST00000326004 SLC6A19Q695T7 634 aa5.3□□□□□ -1.56
HMGB1-201ENST00000326004 CDPF1Q6NVV7 123 aa5.3□□□□□ -1.56
HMGB1-201ENST00000326004 ARMC10Q8N2F6 343 aa5.3□□□□□ -1.56
HMGB1-201ENST00000326004 OR6P1Q8NGX9 317 aa5.3□□□□□ -1.56
HMGB1-201ENST00000326004 ISL2Q96A47 359 aa5.3□□□□□ -1.56
HMGB1-201ENST00000326004 SRRTQ9BXP5 876 aaKnown RBP5.3□□□□□ -1.56
HMGB1-201ENST00000326004 SSU72Q9NP77 194 aaKnown RBP5.3□□□□□ -1.56
HMGB1-201ENST00000326004 REV1Q9UBZ9 1251 aa5.3□□□□□ -1.56
HMGB1-201ENST00000326004 CORINQ9Y5Q5 1042 aa5.3□□□□□ -1.56
HMGB1-201ENST00000326004 ATP2B1P20020 1258 aa5.29□□□□□ -1.56
HMGB1-201ENST00000326004 MAP4P27816 1152 aaKnown RBP5.29□□□□□ -1.56
HMGB1-201ENST00000326004 RXRBP28702 533 aa5.29□□□□□ -1.56
HMGB1-201ENST00000326004 SGO2Q562F6 1265 aa5.29□□□□□ -1.56
HMGB1-201ENST00000326004 MCF2L2Q86YR7 1114 aa5.29□□□□□ -1.56
HMGB1-201ENST00000326004 CLEC10AQ8IUN9 316 aa5.29□□□□□ -1.56
HMGB1-201ENST00000326004 MCATQ8IVS2 390 aaKnown RBP5.29□□□□□ -1.56
HMGB1-201ENST00000326004 PHF6Q8IWS0 365 aaKnown RBP eCLIP5.29□□□□□ -1.56
HMGB1-201ENST00000326004 MRPL41Q8IXM3 137 aaKnown RBP5.29□□□□□ -1.56
HMGB1-201ENST00000326004 RBBP8NLQ8NC74 664 aaPredicted RBP5.29□□□□□ -1.56
HMGB1-201ENST00000326004 FBLIM1Q8WUP2 373 aa5.29□□□□□ -1.56
HMGB1-201ENST00000326004 CPLX3Q8WVH0 158 aa5.29□□□□□ -1.56
HMGB1-201ENST00000326004 ARMC5Q96C12 935 aa5.29□□□□□ -1.56
HMGB1-201ENST00000326004 ACSF2Q96CM8 615 aaPredicted RBP5.29□□□□□ -1.56
HMGB1-201ENST00000326004 TMEM87BQ96K49 555 aa5.29□□□□□ -1.56
HMGB1-201ENST00000326004 DRC1Q96MC2 740 aa5.29□□□□□ -1.56
HMGB1-201ENST00000326004 CRBNQ96SW2 442 aa5.29□□□□□ -1.56
HMGB1-201ENST00000326004 SEMA6CQ9H3T2 930 aa5.29□□□□□ -1.56
HMGB1-201ENST00000326004 FAM95CA0A1B0GW59 222 aa5.28□□□□□ -1.56
HMGB1-201ENST00000326004 MEIS3P2A8K0S8 358 aa5.28□□□□□ -1.56
HMGB1-201ENST00000326004 YARSP54577 528 aaKnown RBP5.28□□□□□ -1.56
HMGB1-201ENST00000326004 EIF6P56537 245 aaKnown RBP5.28□□□□□ -1.56
HMGB1-201ENST00000326004 PAOXQ6QHF9 649 aa5.28□□□□□ -1.56
HMGB1-201ENST00000326004 TP53INP1Q96A56 240 aa5.28□□□□□ -1.56
HMGB1-201ENST00000326004 KCNF1Q9H3M0 494 aa5.28□□□□□ -1.56
HMGB1-201ENST00000326004 GMIPQ9P107 970 aa5.28□□□□□ -1.56
HMGB1-201ENST00000326004 TJP2Q9UDY2 1190 aa5.28□□□□□ -1.56
HMGB1-201ENST00000326004 PPT2Q9UMR5 302 aa5.28□□□□□ -1.56
HMGB1-201ENST00000326004 RAXQ9Y2V3 346 aa5.28□□□□□ -1.56
HMGB1-201ENST00000326004 DAGLAQ9Y4D2 1042 aa5.28□□□□□ -1.56
HMGB1-201ENST00000326004 LRIG2O94898 1065 aa5.27□□□□□ -1.57
HMGB1-201ENST00000326004 ITGB2P05107 769 aa5.27□□□□□ -1.57
HMGB1-201ENST00000326004 NFICP08651 508 aa5.27□□□□□ -1.57
HMGB1-201ENST00000326004 GIPRP48546 466 aa5.27□□□□□ -1.57
HMGB1-201ENST00000326004 SLBPQ14493 270 aaKnown RBP eCLIP5.27□□□□□ -1.57
HMGB1-201ENST00000326004 FBXW10Q5XX13 1052 aa5.27□□□□□ -1.57
HMGB1-201ENST00000326004 BEND4Q6ZU67 534 aa5.27□□□□□ -1.57
HMGB1-201ENST00000326004 SLFN12Q8IYM2 578 aa5.27□□□□□ -1.57
HMGB1-201ENST00000326004 MFSD2AQ8NA29 543 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms