RNA–Protein interactions for RNA: ENST00000284637.13

SH3RF1-201, Transcript of SH3 domain containing ring finger 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SH3RF1, Length 5,272 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-201ENST00000284637 LGR6Q9HBX8 967 aa18.38■□□□□ 0.53
SH3RF1-201ENST00000284637 KAT6BQ8WYB5 2073 aa18.38■□□□□ 0.53
SH3RF1-201ENST00000284637 MED4Q9NPJ6 270 aa18.38■□□□□ 0.53
SH3RF1-201ENST00000284637 NKIRAS1Q9NYS0 192 aa18.38■□□□□ 0.53
SH3RF1-201ENST00000284637 SF3A3Q12874 501 aaKnown RBP eCLIP18.37■□□□□ 0.53
SH3RF1-201ENST00000284637 TTLL12Q14166 644 aaPredicted RBP18.37■□□□□ 0.53
SH3RF1-201ENST00000284637 NSFL1CQ9UNZ2 370 aaKnown RBP18.37■□□□□ 0.53
SH3RF1-201ENST00000284637 ATP11AP98196 1134 aa18.37■□□□□ 0.53
SH3RF1-201ENST00000284637 SEL1L2Q5TEA6 688 aa18.37■□□□□ 0.53
SH3RF1-201ENST00000284637 LRRC8AQ8IWT6 810 aa18.37■□□□□ 0.53
SH3RF1-201ENST00000284637 IFT20Q8IY31 132 aa18.37■□□□□ 0.53
SH3RF1-201ENST00000284637 PPFIBP2Q8ND30 876 aa18.37■□□□□ 0.53
SH3RF1-201ENST00000284637 TM6SF1Q9BZW5 370 aa18.37■□□□□ 0.53
SH3RF1-201ENST00000284637 TRAPPC8Q9Y2L5 1435 aa18.37■□□□□ 0.53
SH3RF1-201ENST00000284637 PARP1P09874 1014 aaKnown RBP18.37■□□□□ 0.53
SH3RF1-201ENST00000284637 MAGEA1P43355 309 aa18.37■□□□□ 0.53
SH3RF1-201ENST00000284637 MAP3K9P80192 1104 aa18.37■□□□□ 0.53
SH3RF1-201ENST00000284637 MICAL1Q8TDZ2 1067 aa18.37■□□□□ 0.53
SH3RF1-201ENST00000284637 NOX5Q96PH1 765 aa18.37■□□□□ 0.53
SH3RF1-201ENST00000284637 STIM2Q9P246 746 aa18.37■□□□□ 0.53
SH3RF1-201ENST00000284637 DDX41Q9UJV9 622 aaKnown RBP18.37■□□□□ 0.53
SH3RF1-201ENST00000284637 hCG_1642624A0A1W2PR95 340 aa18.37■□□□□ 0.53
SH3RF1-201ENST00000284637 PTH1RQ03431 593 aa18.37■□□□□ 0.53
SH3RF1-201ENST00000284637 ZNF804AQ7Z570 1209 aa18.37■□□□□ 0.53
SH3RF1-201ENST00000284637 KLHL7Q8IXQ5 586 aa18.37■□□□□ 0.53
SH3RF1-201ENST00000284637 FAM212AQ96EL1 285 aa18.37■□□□□ 0.53
SH3RF1-201ENST00000284637 MTMR6Q9Y217 621 aa18.37■□□□□ 0.53
SH3RF1-201ENST00000284637 CNNM4Q6P4Q7 775 aa18.36■□□□□ 0.53
SH3RF1-201ENST00000284637 ZNF790Q6PG37 636 aa18.36■□□□□ 0.53
SH3RF1-201ENST00000284637 INTS8Q75QN2 995 aaKnown RBP18.36■□□□□ 0.53
SH3RF1-201ENST00000284637 DESI2Q9BSY9 194 aa18.36■□□□□ 0.53
SH3RF1-201ENST00000284637 RAPGEF6Q8TEU7 1601 aa18.36■□□□□ 0.53
SH3RF1-201ENST00000284637 A2MP01023 1474 aa18.36■□□□□ 0.53
SH3RF1-201ENST00000284637 ITGA6P23229 1130 aa18.36■□□□□ 0.53
SH3RF1-201ENST00000284637 TXKP42681 527 aa18.36■□□□□ 0.53
SH3RF1-201ENST00000284637 EXOC4Q96A65 974 aa18.36■□□□□ 0.53
SH3RF1-201ENST00000284637 MRFAP1L1Q96HT8 127 aa18.36■□□□□ 0.53
SH3RF1-201ENST00000284637 PLEKHA4Q9H4M7 779 aa18.36■□□□□ 0.53
SH3RF1-201ENST00000284637 KIAA1468Q9P260 1216 aa18.36■□□□□ 0.53
SH3RF1-201ENST00000284637 PZPP20742 1482 aa18.36■□□□□ 0.53
SH3RF1-201ENST00000284637 A0A087WUV0 522 aaPredicted RBP18.36■□□□□ 0.53
SH3RF1-201ENST00000284637 SPOPO43791 374 aa18.36■□□□□ 0.53
SH3RF1-201ENST00000284637 LDHBP07195 334 aaKnown RBP18.36■□□□□ 0.53
SH3RF1-201ENST00000284637 ST5P78524 1137 aa18.36■□□□□ 0.53
SH3RF1-201ENST00000284637 FAM71BQ8TC56 605 aa18.36■□□□□ 0.53
SH3RF1-201ENST00000284637 USP28Q96RU2 1077 aa18.36■□□□□ 0.53
SH3RF1-201ENST00000284637 SPATS2LQ9NUQ6 558 aaKnown RBP18.36■□□□□ 0.53
SH3RF1-201ENST00000284637 UHRF1BP1LA0JNW5 1464 aa18.36■□□□□ 0.53
SH3RF1-201ENST00000284637 PPP1R2P41236 205 aa18.36■□□□□ 0.53
SH3RF1-201ENST00000284637 CTDSPL2Q05D32 466 aa18.36■□□□□ 0.53
SH3RF1-201ENST00000284637 BLZF1Q9H2G9 400 aa18.36■□□□□ 0.53
SH3RF1-201ENST00000284637 FEZ2Q9UHY8 353 aaPredicted RBP18.36■□□□□ 0.53
SH3RF1-201ENST00000284637 MYO1CO00159 1063 aa18.35■□□□□ 0.53
SH3RF1-201ENST00000284637 RBBP5Q15291 538 aaKnown RBP18.35■□□□□ 0.53
SH3RF1-201ENST00000284637 LAMC3Q9Y6N6 1575 aa18.35■□□□□ 0.53
SH3RF1-201ENST00000284637 E7EWF7 191 aa18.35■□□□□ 0.53
SH3RF1-201ENST00000284637 CCNT1O60563 726 aaKnown RBP18.35■□□□□ 0.53
SH3RF1-201ENST00000284637 DAAM2Q86T65 1068 aa18.35■□□□□ 0.53
SH3RF1-201ENST00000284637 PNMA8AQ86V59 439 aaPredicted RBP18.35■□□□□ 0.53
SH3RF1-201ENST00000284637 PLBD2Q8NHP8 589 aa18.35■□□□□ 0.53
SH3RF1-201ENST00000284637 MRRFQ96E11 262 aaKnown RBP18.35■□□□□ 0.53
SH3RF1-201ENST00000284637 SWAP70Q9UH65 585 aa18.35■□□□□ 0.53
SH3RF1-201ENST00000284637 CEP104O60308 925 aa18.35■□□□□ 0.53
SH3RF1-201ENST00000284637 MYSM1Q5VVJ2 828 aa18.35■□□□□ 0.53
SH3RF1-201ENST00000284637 IP6K1Q92551 441 aa18.35■□□□□ 0.53
SH3RF1-201ENST00000284637 SERTAD1Q9UHV2 236 aa18.35■□□□□ 0.53
SH3RF1-201ENST00000284637 TPCN1Q9ULQ1 816 aa18.35■□□□□ 0.53
SH3RF1-201ENST00000284637 TNFAIP3P21580 790 aa18.34■□□□□ 0.53
SH3RF1-201ENST00000284637 BCAS4Q8TDM0 211 aa18.34■□□□□ 0.53
SH3RF1-201ENST00000284637 SAP30BPQ9UHR5 308 aaKnown RBP18.34■□□□□ 0.53
SH3RF1-201ENST00000284637 HMGB2P26583 209 aaKnown RBP18.34■□□□□ 0.53
SH3RF1-201ENST00000284637 ADALQ6DHV7 355 aa18.34■□□□□ 0.53
SH3RF1-201ENST00000284637 EPB41P11171 864 aaKnown RBP18.34■□□□□ 0.53
SH3RF1-201ENST00000284637 IL2RBP14784 551 aa18.34■□□□□ 0.53
SH3RF1-201ENST00000284637 PFKFB1P16118 471 aa18.34■□□□□ 0.53
SH3RF1-201ENST00000284637 SLC8A1P32418 973 aa18.34■□□□□ 0.53
SH3RF1-201ENST00000284637 SLC9C1Q4G0N8 1177 aa18.34■□□□□ 0.53
SH3RF1-201ENST00000284637 TTC6Q86TZ1 520 aa18.34■□□□□ 0.53
SH3RF1-201ENST00000284637 NELFBQ8WX92 580 aa18.34■□□□□ 0.53
SH3RF1-201ENST00000284637 NUP58Q9BVL2 599 aa18.34■□□□□ 0.53
SH3RF1-201ENST00000284637 BAIAP2L1Q9UHR4 511 aa18.34■□□□□ 0.53
SH3RF1-201ENST00000284637 UHRF1BP1Q6BDS2 1440 aa18.34■□□□□ 0.53
SH3RF1-201ENST00000284637 ARL1P40616 181 aaPredicted RBP18.34■□□□□ 0.53
SH3RF1-201ENST00000284637 VWA3BQ502W6 1294 aa18.34■□□□□ 0.53
SH3RF1-201ENST00000284637 FRMD4BQ9Y2L6 1034 aa18.34■□□□□ 0.53
SH3RF1-201ENST00000284637 PSDA5PKW4 1024 aaPredicted RBP18.33■□□□□ 0.53
SH3RF1-201ENST00000284637 ACTN4O43707 911 aaKnown RBP18.33■□□□□ 0.53
SH3RF1-201ENST00000284637 UAP1Q16222 522 aaPredicted RBP18.33■□□□□ 0.53
SH3RF1-201ENST00000284637 GPCPD1Q9NPB8 672 aa18.33■□□□□ 0.53
SH3RF1-201ENST00000284637 E2F4Q16254 413 aa18.33■□□□□ 0.53
SH3RF1-201ENST00000284637 ASIC2Q16515 512 aa18.33■□□□□ 0.53
SH3RF1-201ENST00000284637 NAP1L3Q99457 506 aaPredicted RBP18.33■□□□□ 0.53
SH3RF1-201ENST00000284637 UTP11Q9Y3A2 253 aaKnown RBP18.33■□□□□ 0.53
SH3RF1-201ENST00000284637 ABCC4O15439 1325 aa18.33■□□□□ 0.52
SH3RF1-201ENST00000284637 BRD2P25440 801 aaKnown RBP18.33■□□□□ 0.52
SH3RF1-201ENST00000284637 DYMQ7RTS9 669 aa18.33■□□□□ 0.52
SH3RF1-201ENST00000284637 PLCG2P16885 1265 aa18.33■□□□□ 0.52
SH3RF1-201ENST00000284637 RABGGTAQ92696 567 aa18.33■□□□□ 0.52
SH3RF1-201ENST00000284637 LRRC45Q96CN5 670 aa18.33■□□□□ 0.52
SH3RF1-201ENST00000284637 TRIM7Q9C029 511 aa18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms