RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 TMEM203Q969S6 136 aa0.29□□□□□ -2.36
CD44-234ENST00000531873 NDUFA4L2Q9NRX3 87 aa0.29□□□□□ -2.36
CD44-234ENST00000531873 GNG8Q9UK08 70 aa0.29□□□□□ -2.36
CD44-234ENST00000531873 TIMM8BQ9Y5J9 83 aaPredicted RBP0.29□□□□□ -2.36
CD44-234ENST00000531873 LOC285095A0A1B0GVY8 99 aa0.28□□□□□ -2.36
CD44-234ENST00000531873 C9orf92A6NGG3 77 aa0.28□□□□□ -2.36
CD44-234ENST00000531873 FAM223BA6NKX1 122 aa0.28□□□□□ -2.36
CD44-234ENST00000531873 H0YAA0 97 aa0.28□□□□□ -2.36
CD44-234ENST00000531873 GNG4P50150 75 aa0.28□□□□□ -2.36
CD44-234ENST00000531873 Q0VG73 95 aa0.28□□□□□ -2.36
CD44-234ENST00000531873 FAM223AQ8IWN6 122 aa0.28□□□□□ -2.36
CD44-234ENST00000531873 AMELXQ99217 191 aa0.28□□□□□ -2.36
CD44-234ENST00000531873 NOP10Q9NPE3 64 aaKnown RBP0.28□□□□□ -2.36
CD44-234ENST00000531873 SPINK1P00995 79 aa0.27□□□□□ -2.37
CD44-234ENST00000531873 S100A1P23297 94 aa0.27□□□□□ -2.37
CD44-234ENST00000531873 UBE2D2P62837 147 aa0.27□□□□□ -2.37
CD44-234ENST00000531873 PPP3R1P63098 170 aa0.27□□□□□ -2.37
CD44-234ENST00000531873 DEFA5Q01523 94 aa0.27□□□□□ -2.37
CD44-234ENST00000531873 PSMG4Q5JS54 123 aa0.27□□□□□ -2.37
CD44-234ENST00000531873 HEPN1Q6WQI6 88 aa0.27□□□□□ -2.37
CD44-234ENST00000531873 LEAP2Q969E1 77 aa0.27□□□□□ -2.37
CD44-234ENST00000531873 MGST2Q99735 147 aa0.27□□□□□ -2.37
CD44-234ENST00000531873 RHPN1-AS1Q9BWJ2 59 aa0.27□□□□□ -2.37
CD44-234ENST00000531873 LINC00472Q9H8W2 130 aa0.27□□□□□ -2.37
CD44-234ENST00000531873 PRO0255Q9UI72 69 aa0.27□□□□□ -2.37
CD44-234ENST00000531873 V9GYH0 126 aa0.27□□□□□ -2.37
CD44-234ENST00000531873 CTXND1A0A1B0GTU2 59 aa0.26□□□□□ -2.37
CD44-234ENST00000531873 UBE2L5PA0A1B0GUS4 154 aa0.26□□□□□ -2.37
CD44-234ENST00000531873 UBE2L3P68036 154 aaKnown RBP0.26□□□□□ -2.37
CD44-234ENST00000531873 TMEM167AQ8TBQ9 72 aa0.26□□□□□ -2.37
CD44-234ENST00000531873 DPY30Q9C005 99 aa0.26□□□□□ -2.37
CD44-234ENST00000531873 IGLC7A0M8Q6 106 aa0.25□□□□□ -2.37
CD44-234ENST00000531873 HMGN4O00479 90 aa0.25□□□□□ -2.37
CD44-234ENST00000531873 MT1GP13640 62 aa0.25□□□□□ -2.37
CD44-234ENST00000531873 NPVFQ9HCQ7 196 aa0.25□□□□□ -2.37
CD44-234ENST00000531873 A0A096LNI7 61 aa0.24□□□□□ -2.37
CD44-234ENST00000531873 PVALEFA0A1B0GWK0 134 aa0.24□□□□□ -2.37
CD44-234ENST00000531873 FAM24AA6NFZ4 105 aa0.24□□□□□ -2.37
CD44-234ENST00000531873 TMEM262E9PQX1 116 aa0.24□□□□□ -2.37
CD44-234ENST00000531873 F8VRH5 84 aa0.24□□□□□ -2.37
CD44-234ENST00000531873 NCBP2-AS2Q69YL0 99 aa0.24□□□□□ -2.37
CD44-234ENST00000531873 TMEM263Q8WUH6 116 aaKnown RBP0.24□□□□□ -2.37
CD44-234ENST00000531873 SMIM4Q8WVI0 70 aa0.24□□□□□ -2.37
CD44-234ENST00000531873 LINC01558Q9Y6Z2 57 aa0.24□□□□□ -2.37
CD44-234ENST00000531873 A0A087WWC5 75 aa0.23□□□□□ -2.37
CD44-234ENST00000531873 NDUFA3O95167 84 aa0.23□□□□□ -2.37
CD44-234ENST00000531873 CYB5AP00167 134 aa0.23□□□□□ -2.37
CD44-234ENST00000531873 SPINK8P0C7L1 97 aa0.23□□□□□ -2.37
CD44-234ENST00000531873 IFITM1P13164 125 aa0.23□□□□□ -2.37
CD44-234ENST00000531873 MRPS10P82664 201 aaKnown RBP0.23□□□□□ -2.37
CD44-234ENST00000531873 KRTAP19-8Q3LI54 63 aa0.23□□□□□ -2.37
CD44-234ENST00000531873 Q5BKY6 102 aa0.23□□□□□ -2.37
CD44-234ENST00000531873 BAGE2Q86Y30 109 aa0.23□□□□□ -2.37
CD44-234ENST00000531873 SVBPQ8N300 66 aa0.23□□□□□ -2.37
CD44-234ENST00000531873 CHKB-CPT1BH3BT56 60 aa0.22□□□□□ -2.37
CD44-234ENST00000531873 UQCR11O14957 56 aa0.22□□□□□ -2.37
CD44-234ENST00000531873 BCE1O60756 84 aa0.22□□□□□ -2.37
CD44-234ENST00000531873 PRCDQ00LT1 54 aa0.22□□□□□ -2.37
CD44-234ENST00000531873 TMEM170BQ5T4T1 132 aa0.22□□□□□ -2.37
CD44-234ENST00000531873 CDC42SE2Q9NRR3 84 aa0.22□□□□□ -2.37
CD44-234ENST00000531873 SPINK4O60575 86 aa0.21□□□□□ -2.38
CD44-234ENST00000531873 HMGN2P05204 90 aaKnown RBP0.21□□□□□ -2.38
CD44-234ENST00000531873 SFTA3P0C7M3 94 aa0.21□□□□□ -2.38
CD44-234ENST00000531873 ATP5EP56381 51 aaPredicted RBP0.21□□□□□ -2.38
CD44-234ENST00000531873 GNG11P61952 73 aa0.21□□□□□ -2.38
CD44-234ENST00000531873 FAM213BQ8TBF2 198 aa0.21□□□□□ -2.38
CD44-234ENST00000531873 CNFNQ9BYD5 112 aa0.21□□□□□ -2.38
CD44-234ENST00000531873 TRAV22A0A0B4J277 110 aa0.2□□□□□ -2.38
CD44-234ENST00000531873 CRYM-AS1A6NIL9 109 aa0.2□□□□□ -2.38
CD44-234ENST00000531873 IFI6P09912 130 aa0.2□□□□□ -2.38
CD44-234ENST00000531873 S100PP25815 95 aa0.2□□□□□ -2.38
CD44-234ENST00000531873 PKIAP61925 76 aa0.2□□□□□ -2.38
CD44-234ENST00000531873 HSD52Q0P140 79 aa0.2□□□□□ -2.38
CD44-234ENST00000531873 KRTAP6-2Q3LI66 62 aa0.2□□□□□ -2.38
CD44-234ENST00000531873 MT1MQ8N339 61 aa0.2□□□□□ -2.38
CD44-234ENST00000531873 SPRR2GQ9BYE4 73 aa0.2□□□□□ -2.38
CD44-234ENST00000531873 SFT2D2O95562 160 aa0.19□□□□□ -2.38
CD44-234ENST00000531873 MT1EP04732 61 aa0.19□□□□□ -2.38
CD44-234ENST00000531873 COX17Q14061 63 aa0.19□□□□□ -2.38
CD44-234ENST00000531873 ENHOQ6UWT2 76 aa0.19□□□□□ -2.38
CD44-234ENST00000531873 C14orf144Q96I85 54 aa0.19□□□□□ -2.38
CD44-234ENST00000531873 FAM167A-AS1Q96KT0 104 aa0.19□□□□□ -2.38
CD44-234ENST00000531873 DEFB1P60022 68 aa0.18□□□□□ -2.38
CD44-234ENST00000531873 MT1XP80297 61 aa0.18□□□□□ -2.38
CD44-234ENST00000531873 WHAMMP3Q1A5X7 153 aa0.18□□□□□ -2.38
CD44-234ENST00000531873 Q6JHZ5 121 aa0.18□□□□□ -2.38
CD44-234ENST00000531873 CLPSL2Q6UWE3 100 aa0.18□□□□□ -2.38
CD44-234ENST00000531873 GTF2H5Q6ZYL4 71 aa0.18□□□□□ -2.38
CD44-234ENST00000531873 SPRR4Q96PI1 79 aa0.18□□□□□ -2.38
CD44-234ENST00000531873 A0A1B0GWA3 101 aa0.17□□□□□ -2.38
CD44-234ENST00000531873 H3BQ15 152 aa0.17□□□□□ -2.38
CD44-234ENST00000531873 APOC3P02656 99 aa0.17□□□□□ -2.38
CD44-234ENST00000531873 IGLC1P0CG04 106 aa0.17□□□□□ -2.38
CD44-234ENST00000531873 SAA2P0DJI9 122 aaPredicted RBP0.17□□□□□ -2.38
CD44-234ENST00000531873 SNCAP37840 140 aa0.17□□□□□ -2.38
CD44-234ENST00000531873 NXT2Q9NPJ8 142 aaKnown RBP0.17□□□□□ -2.38
CD44-234ENST00000531873 CRIPTQ9P021 101 aa0.17□□□□□ -2.38
CD44-234ENST00000531873 ABRACLQ9P1F3 81 aa0.17□□□□□ -2.38
CD44-234ENST00000531873 I3L2K1 104 aa0.16□□□□□ -2.38
CD44-234ENST00000531873 RPL39P5Q59GN2 51 aa0.16□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms