RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 ASB16-AS1Q495Z4 193 aa1.75□□□□□ -2.13
VPS13C-210ENST00000561258 GLIPR1L1Q6UWM5 242 aa1.75□□□□□ -2.13
VPS13C-210ENST00000561258 C6orf201Q7Z4U5 140 aa1.75□□□□□ -2.13
VPS13C-210ENST00000561258 TMEM138Q9NPI0 162 aa1.75□□□□□ -2.13
VPS13C-210ENST00000561258 BET1LQ9NYM9 111 aa1.75□□□□□ -2.13
VPS13C-210ENST00000561258 HSPB8Q9UJY1 196 aa1.75□□□□□ -2.13
VPS13C-210ENST00000561258 TRBV6-7A0A0A0MS04 114 aa1.74□□□□□ -2.13
VPS13C-210ENST00000561258 A8MTW9 85 aa1.74□□□□□ -2.13
VPS13C-210ENST00000561258 FXYD1O00168 92 aa1.74□□□□□ -2.13
VPS13C-210ENST00000561258 S100A12P80511 92 aa1.74□□□□□ -2.13
VPS13C-210ENST00000561258 OBSCN-AS1Q96MR7 158 aa1.74□□□□□ -2.13
VPS13C-210ENST00000561258 MDN1Q9NU22 5596 aa1.73□□□□□ -2.13
VPS13C-210ENST00000561258 BBIP1A8MTZ0 92 aa1.73□□□□□ -2.13
VPS13C-210ENST00000561258 H3BRM9 83 aa1.73□□□□□ -2.13
VPS13C-210ENST00000561258 SNAPC5O75971 98 aa1.73□□□□□ -2.13
VPS13C-210ENST00000561258 LSM3P62310 102 aaKnown RBP1.73□□□□□ -2.13
VPS13C-210ENST00000561258 QRFPP83859 136 aa1.73□□□□□ -2.13
VPS13C-210ENST00000561258 HIST1H1AQ02539 215 aaPredicted RBP1.73□□□□□ -2.13
VPS13C-210ENST00000561258 HSD17B12Q53GQ0 312 aa1.73□□□□□ -2.13
VPS13C-210ENST00000561258 NDUFA4L2Q9NRX3 87 aa1.73□□□□□ -2.13
VPS13C-210ENST00000561258 TRAV30A0A087WSZ9 112 aa1.72□□□□□ -2.13
VPS13C-210ENST00000561258 C3orf85A0A1B0GTC6 90 aa1.72□□□□□ -2.13
VPS13C-210ENST00000561258 ZNF727A8MUV8 499 aa1.72□□□□□ -2.13
VPS13C-210ENST00000561258 J3QLW9 94 aa1.72□□□□□ -2.13
VPS13C-210ENST00000561258 COX6B2Q6YFQ2 88 aa1.72□□□□□ -2.13
VPS13C-210ENST00000561258 LINC00526Q96FQ7 95 aa1.72□□□□□ -2.13
VPS13C-210ENST00000561258 TAS2R8Q9NYW2 309 aa1.72□□□□□ -2.13
VPS13C-210ENST00000561258 SPINK4O60575 86 aa1.71□□□□□ -2.14
VPS13C-210ENST00000561258 DNAL4O96015 105 aa1.71□□□□□ -2.14
VPS13C-210ENST00000561258 SFTA3P0C7M3 94 aa1.71□□□□□ -2.14
VPS13C-210ENST00000561258 SNCAP37840 140 aa1.71□□□□□ -2.14
VPS13C-210ENST00000561258 Q0VG73 95 aa1.71□□□□□ -2.14
VPS13C-210ENST00000561258 KRTAP19-2Q3LHN2 52 aa1.71□□□□□ -2.14
VPS13C-210ENST00000561258 CASC2Q6XLA1 102 aa1.71□□□□□ -2.14
VPS13C-210ENST00000561258 TMEM14CQ9P0S9 112 aa1.71□□□□□ -2.14
VPS13C-210ENST00000561258 TRAV12-3A0A0B4J271 114 aa1.7□□□□□ -2.14
VPS13C-210ENST00000561258 CRYM-AS1A6NIL9 109 aa1.7□□□□□ -2.14
VPS13C-210ENST00000561258 CORTO00230 105 aa1.7□□□□□ -2.14
VPS13C-210ENST00000561258 COX6A2Q02221 97 aa1.7□□□□□ -2.14
VPS13C-210ENST00000561258 TMEM91Q6ZNR0 172 aa1.7□□□□□ -2.14
VPS13C-210ENST00000561258 AP1S3Q96PC3 154 aa1.7□□□□□ -2.14
VPS13C-210ENST00000561258 CIB3Q96Q77 187 aaPredicted RBP1.7□□□□□ -2.14
VPS13C-210ENST00000561258 LOC107984156A0A0G2JMH3 177 aa1.69□□□□□ -2.14
VPS13C-210ENST00000561258 M0R129 80 aa1.69□□□□□ -2.14
VPS13C-210ENST00000561258 CATR1Q13166 79 aa1.69□□□□□ -2.14
VPS13C-210ENST00000561258 ARL17AQ8IVW1 177 aa1.69□□□□□ -2.14
VPS13C-210ENST00000561258 TSC22D3Q99576 134 aa1.69□□□□□ -2.14
VPS13C-210ENST00000561258 KRTAP2-1Q9BYU5 128 aa1.69□□□□□ -2.14
VPS13C-210ENST00000561258 LINC00474Q9P2X8 69 aa1.69□□□□□ -2.14
VPS13C-210ENST00000561258 A0A087WWC5 75 aa1.68□□□□□ -2.14
VPS13C-210ENST00000561258 IGLC1P0CG04 106 aa1.68□□□□□ -2.14
VPS13C-210ENST00000561258 AKR1D1P51857 326 aa1.68□□□□□ -2.14
VPS13C-210ENST00000561258 KRTAP19-6Q3LI70 58 aa1.68□□□□□ -2.14
VPS13C-210ENST00000561258 ARHGAP5-AS1Q96IT6 56 aa1.68□□□□□ -2.14
VPS13C-210ENST00000561258 MRPL36Q9P0J6 103 aaKnown RBP1.68□□□□□ -2.14
VPS13C-210ENST00000561258 GNGT2O14610 69 aa1.67□□□□□ -2.14
VPS13C-210ENST00000561258 CKS2P33552 79 aa1.67□□□□□ -2.14
VPS13C-210ENST00000561258 RHOHQ15669 191 aa1.67□□□□□ -2.14
VPS13C-210ENST00000561258 WHAMMP3Q1A5X7 153 aa1.67□□□□□ -2.14
VPS13C-210ENST00000561258 IZUMO2Q6UXV1 221 aa1.67□□□□□ -2.14
VPS13C-210ENST00000561258 ACBD7Q8N6N7 88 aa1.67□□□□□ -2.14
VPS13C-210ENST00000561258 C5orf17Q8NAS9 161 aa1.67□□□□□ -2.14
VPS13C-210ENST00000561258 FLGP20930 4061 aaPredicted RBP1.67□□□□□ -2.14
VPS13C-210ENST00000561258 A0A096LNI7 61 aa1.66□□□□□ -2.14
VPS13C-210ENST00000561258 A0A0G2JND7 137 aa1.66□□□□□ -2.14
VPS13C-210ENST00000561258 IFITM5A6NNB3 132 aa1.66□□□□□ -2.14
VPS13C-210ENST00000561258 TMEM262E9PQX1 116 aa1.66□□□□□ -2.14
VPS13C-210ENST00000561258 JMJD7-PLA2G4BH0Y9G9 81 aa1.66□□□□□ -2.14
VPS13C-210ENST00000561258 PPYP01298 95 aa1.66□□□□□ -2.14
VPS13C-210ENST00000561258 ANGP03950 147 aaKnown RBP1.66□□□□□ -2.14
VPS13C-210ENST00000561258 NEDD8Q15843 81 aa1.66□□□□□ -2.14
VPS13C-210ENST00000561258 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.66□□□□□ -2.14
VPS13C-210ENST00000561258 ODF3Q96PU9 254 aa1.66□□□□□ -2.14
VPS13C-210ENST00000561258 PDCD10Q9BUL8 212 aa1.66□□□□□ -2.14
VPS13C-210ENST00000561258 COPZ2Q9P299 210 aa1.66□□□□□ -2.14
VPS13C-210ENST00000561258 TNFSF18Q9UNG2 199 aa1.66□□□□□ -2.14
VPS13C-210ENST00000561258 PNMA8CA0A1B0GUJ8 204 aa1.65□□□□□ -2.15
VPS13C-210ENST00000561258 A6NN06 94 aa1.65□□□□□ -2.15
VPS13C-210ENST00000561258 SNRPGP15A8MWD9 76 aa1.65□□□□□ -2.15
VPS13C-210ENST00000561258 CD3DP04234 171 aa1.65□□□□□ -2.15
VPS13C-210ENST00000561258 ENHOQ6UWT2 76 aa1.65□□□□□ -2.15
VPS13C-210ENST00000561258 SMIM3Q9BZL3 60 aa1.65□□□□□ -2.15
VPS13C-210ENST00000561258 LPAR5Q9H1C0 372 aa1.65□□□□□ -2.15
VPS13C-210ENST00000561258 COMMD3Q9UBI1 195 aa1.65□□□□□ -2.15
VPS13C-210ENST00000561258 EDF1O60869 148 aaKnown RBP1.64□□□□□ -2.15
VPS13C-210ENST00000561258 IGLC6P0CF74 106 aa1.64□□□□□ -2.15
VPS13C-210ENST00000561258 CCDC58Q4VC31 144 aa1.64□□□□□ -2.15
VPS13C-210ENST00000561258 C12orf73Q69YU5 71 aa1.64□□□□□ -2.15
VPS13C-210ENST00000561258 TSKUQ8WUA8 353 aa1.64□□□□□ -2.15
VPS13C-210ENST00000561258 UBE2D4Q9Y2X8 147 aa1.64□□□□□ -2.15
VPS13C-210ENST00000561258 IGHV1-24A0A0C4DH33 117 aa1.63□□□□□ -2.15
VPS13C-210ENST00000561258 COX4I1P13073 169 aa1.63□□□□□ -2.15
VPS13C-210ENST00000561258 FXYD4P59646 89 aa1.63□□□□□ -2.15
VPS13C-210ENST00000561258 CLPSL2Q6UWE3 100 aa1.63□□□□□ -2.15
VPS13C-210ENST00000561258 LINC00299Q6ZSB3 139 aa1.63□□□□□ -2.15
VPS13C-210ENST00000561258 SMIM7Q9BQ49 75 aa1.63□□□□□ -2.15
VPS13C-210ENST00000561258 LIMD2Q9BT23 127 aa1.63□□□□□ -2.15
VPS13C-210ENST00000561258 SAR1AQ9NR31 198 aa1.63□□□□□ -2.15
VPS13C-210ENST00000561258 M0R2P5 195 aa1.62□□□□□ -2.15
VPS13C-210ENST00000561258 XAF1Q6GPH4 301 aa1.62□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 85.3 ms