RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 M0R143 59 aa7.76□□□□□ -1.17
SQSTM1-208ENST00000485412 SMIM13P0DJ93 91 aa7.76□□□□□ -1.17
SQSTM1-208ENST00000485412 SMCR5Q8TEV8 140 aa7.76□□□□□ -1.17
SQSTM1-208ENST00000485412 TRAV12-1A0A0B4J245 112 aa7.75□□□□□ -1.17
SQSTM1-208ENST00000485412 TMEM223A0PJW6 202 aa7.75□□□□□ -1.17
SQSTM1-208ENST00000485412 SPRR1AP35321 89 aa7.75□□□□□ -1.17
SQSTM1-208ENST00000485412 SPATA45Q537H7 98 aa7.75□□□□□ -1.17
SQSTM1-208ENST00000485412 PRYO14603 147 aa7.74□□□□□ -1.17
SQSTM1-208ENST00000485412 BOD1L2Q8IYS8 172 aa7.74□□□□□ -1.17
SQSTM1-208ENST00000485412 CHTOPQ9Y3Y2 248 aaKnown RBP7.74□□□□□ -1.17
SQSTM1-208ENST00000485412 ZNF706Q9Y5V0 76 aaPredicted RBP7.74□□□□□ -1.17
SQSTM1-208ENST00000485412 ERC2-IT1O76042 136 aa7.73□□□□□ -1.17
SQSTM1-208ENST00000485412 MIR7-3HGQ8N6C7 128 aa7.73□□□□□ -1.17
SQSTM1-208ENST00000485412 NDUFA12Q9UI09 145 aa7.73□□□□□ -1.17
SQSTM1-208ENST00000485412 TRBV10-3A0A0K0K1G6 114 aa7.72□□□□□ -1.17
SQSTM1-208ENST00000485412 LINC00483Q53H64 154 aa7.72□□□□□ -1.17
SQSTM1-208ENST00000485412 SFTA2Q6UW10 78 aa7.72□□□□□ -1.17
SQSTM1-208ENST00000485412 ATOH7Q8N100 152 aa7.72□□□□□ -1.17
SQSTM1-208ENST00000485412 KCNQ1DNQ9H478 68 aa7.72□□□□□ -1.17
SQSTM1-208ENST00000485412 UQCR10Q9UDW1 63 aa7.72□□□□□ -1.17
SQSTM1-208ENST00000485412 SPINK1P00995 79 aa7.71□□□□□ -1.18
SQSTM1-208ENST00000485412 MOBPQ13875 183 aa7.71□□□□□ -1.18
SQSTM1-208ENST00000485412 GAGE2AQ6NT46 116 aa7.71□□□□□ -1.18
SQSTM1-208ENST00000485412 IGLV9-49A0A0B4J1Y8 123 aa7.7□□□□□ -1.18
SQSTM1-208ENST00000485412 ETDCA0A1B0GVM5 59 aa7.7□□□□□ -1.18
SQSTM1-208ENST00000485412 MEIG1Q5JSS6 88 aa7.7□□□□□ -1.18
SQSTM1-208ENST00000485412 Q8N377 158 aa7.7□□□□□ -1.18
SQSTM1-208ENST00000485412 H0Y8G0 127 aa7.69□□□□□ -1.18
SQSTM1-208ENST00000485412 B5MCH6 92 aa7.68□□□□□ -1.18
SQSTM1-208ENST00000485412 DPM2O94777 84 aa7.68□□□□□ -1.18
SQSTM1-208ENST00000485412 IGKCP01834 107 aa7.68□□□□□ -1.18
SQSTM1-208ENST00000485412 PLNP26678 52 aa7.68□□□□□ -1.18
SQSTM1-208ENST00000485412 TSPEAR-AS2P59090 65 aa7.68□□□□□ -1.18
SQSTM1-208ENST00000485412 PMCHL2Q9BQD1 86 aa7.68□□□□□ -1.18
SQSTM1-208ENST00000485412 Q9BRP9 147 aa7.68□□□□□ -1.18
SQSTM1-208ENST00000485412 HSBP1L1C9JCN9 74 aa7.67□□□□□ -1.18
SQSTM1-208ENST00000485412 LCE2CQ5TA81 110 aa7.67□□□□□ -1.18
SQSTM1-208ENST00000485412 BATFQ16520 125 aa7.64□□□□□ -1.19
SQSTM1-208ENST00000485412 KRTAP19-2Q3LHN2 52 aa7.64□□□□□ -1.19
SQSTM1-208ENST00000485412 COL5A1-AS1Q5SY13 56 aa7.64□□□□□ -1.19
SQSTM1-208ENST00000485412 XP32Q5T750 250 aa7.64□□□□□ -1.19
SQSTM1-208ENST00000485412 CFC1BP0CG36 223 aa7.63□□□□□ -1.19
SQSTM1-208ENST00000485412 HERV-K104P63124 156 aa7.63□□□□□ -1.19
SQSTM1-208ENST00000485412 SLC25A20O43772 301 aa7.62□□□□□ -1.19
SQSTM1-208ENST00000485412 RPS29P62273 56 aaKnown RBP7.62□□□□□ -1.19
SQSTM1-208ENST00000485412 Q6ZRX8 168 aa7.62□□□□□ -1.19
SQSTM1-208ENST00000485412 DLEU1O43261 78 aa7.61□□□□□ -1.19
SQSTM1-208ENST00000485412 EIF4EBP3O60516 100 aaPredicted RBP7.61□□□□□ -1.19
SQSTM1-208ENST00000485412 MT1HP80294 61 aa7.61□□□□□ -1.19
SQSTM1-208ENST00000485412 ANKRD39Q53RE8 183 aa7.61□□□□□ -1.19
SQSTM1-208ENST00000485412 SSBP3-AS1Q7Z2R9 100 aa7.61□□□□□ -1.19
SQSTM1-208ENST00000485412 LOC107984156A0A0G2JMH3 177 aa7.6□□□□□ -1.19
SQSTM1-208ENST00000485412 MYMXA0A1B0GTQ4 84 aa7.6□□□□□ -1.19
SQSTM1-208ENST00000485412 COX8AP10176 69 aa7.6□□□□□ -1.19
SQSTM1-208ENST00000485412 ARL17AQ8IVW1 177 aa7.6□□□□□ -1.19
SQSTM1-208ENST00000485412 ST20-AS1Q8NBB2 130 aa7.6□□□□□ -1.19
SQSTM1-208ENST00000485412 E9PLD3 99 aa7.59□□□□□ -1.19
SQSTM1-208ENST00000485412 HINT1P49773 126 aaPredicted RBP7.59□□□□□ -1.19
SQSTM1-208ENST00000485412 SLC25A34Q6PIV7 304 aa7.59□□□□□ -1.19
SQSTM1-208ENST00000485412 TRBV10-2A0A0K0K1G8 114 aa7.58□□□□□ -1.2
SQSTM1-208ENST00000485412 C9orf153Q5TBE3 101 aa7.58□□□□□ -1.2
SQSTM1-208ENST00000485412 SOSTDC1Q6X4U4 206 aa7.58□□□□□ -1.2
SQSTM1-208ENST00000485412 LEPROTO15243 131 aa7.57□□□□□ -1.2
SQSTM1-208ENST00000485412 IGLV6-57P01721 117 aa7.57□□□□□ -1.2
SQSTM1-208ENST00000485412 HERVK_113P61574 105 aa7.57□□□□□ -1.2
SQSTM1-208ENST00000485412 C2orf91Q6ZV80 131 aa7.57□□□□□ -1.2
SQSTM1-208ENST00000485412 NPC2P61916 151 aa7.56□□□□□ -1.2
SQSTM1-208ENST00000485412 BVES-AS1Q5T3Y7 98 aa7.56□□□□□ -1.2
SQSTM1-208ENST00000485412 SPANXB1Q9NS25 103 aaPredicted RBP7.56□□□□□ -1.2
SQSTM1-208ENST00000485412 IGLV8-61A0A075B6I0 122 aa7.55□□□□□ -1.2
SQSTM1-208ENST00000485412 J3QQQ9 107 aa7.55□□□□□ -1.2
SQSTM1-208ENST00000485412 NMUP48645 174 aa7.55□□□□□ -1.2
SQSTM1-208ENST00000485412 TRAV23DV6A0A075B6W5 121 aa7.54□□□□□ -1.2
SQSTM1-208ENST00000485412 PCOTHQ58A44 107 aa7.54□□□□□ -1.2
SQSTM1-208ENST00000485412 ADAMTSL4-AS1Q5T5F5 129 aa7.54□□□□□ -1.2
SQSTM1-208ENST00000485412 Q6ZVH6 145 aa7.54□□□□□ -1.2
SQSTM1-208ENST00000485412 PCP2Q8IVA1 136 aa7.54□□□□□ -1.2
SQSTM1-208ENST00000485412 LORP23490 312 aaPredicted RBP7.53□□□□□ -1.2
SQSTM1-208ENST00000485412 KRTAP10-6P60371 365 aaPredicted RBP7.53□□□□□ -1.2
SQSTM1-208ENST00000485412 S100A7L2Q5SY68 101 aa7.53□□□□□ -1.2
SQSTM1-208ENST00000485412 HRCT1Q6UXD1 115 aa7.53□□□□□ -1.2
SQSTM1-208ENST00000485412 HIGD1BQ9P298 99 aa7.53□□□□□ -1.2
SQSTM1-208ENST00000485412 FLGP20930 4061 aaPredicted RBP7.52□□□□□ -1.2
SQSTM1-208ENST00000485412 C9orf92A6NGG3 77 aa7.52□□□□□ -1.21
SQSTM1-208ENST00000485412 TAX1BP3O14907 124 aa7.52□□□□□ -1.21
SQSTM1-208ENST00000485412 ZNF73O43830 326 aaPredicted RBP7.52□□□□□ -1.21
SQSTM1-208ENST00000485412 M0R2T5 61 aa7.51□□□□□ -1.21
SQSTM1-208ENST00000485412 NDUFC2O95298 119 aa7.51□□□□□ -1.21
SQSTM1-208ENST00000485412 A0A0J9YXY3 114 aa7.49□□□□□ -1.21
SQSTM1-208ENST00000485412 LGALS3P17931 250 aaKnown RBP7.49□□□□□ -1.21
SQSTM1-208ENST00000485412 UBE2V1Q13404 147 aa7.48□□□□□ -1.21
SQSTM1-208ENST00000485412 TTTY13Q9BZ97 58 aa7.48□□□□□ -1.21
SQSTM1-208ENST00000485412 ZNF815PA8K554 130 aa7.47□□□□□ -1.21
SQSTM1-208ENST00000485412 HSD52Q0P140 79 aa7.47□□□□□ -1.21
SQSTM1-208ENST00000485412 SPRR1BP22528 89 aa7.46□□□□□ -1.22
SQSTM1-208ENST00000485412 TAL2Q16559 108 aa7.46□□□□□ -1.22
SQSTM1-208ENST00000485412 LITAFQ99732 161 aa7.45□□□□□ -1.22
SQSTM1-208ENST00000485412 LIMD2Q9BT23 127 aa7.45□□□□□ -1.22
SQSTM1-208ENST00000485412 A0A0G2JQZ4 141 aa7.43□□□□□ -1.22
SQSTM1-208ENST00000485412 H7C2G1 150 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms