RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 HELZ2Q9BYK8 2649 aaKnown RBP7.68□□□□□ -1.18
CLN3-244ENST00000636147 CELSR1Q9NYQ6 3014 aa7.68□□□□□ -1.18
CLN3-244ENST00000636147 NDUFC2-KCTD14E9PQ53 114 aa7.67□□□□□ -1.18
CLN3-244ENST00000636147 CELA1Q9UNI1 258 aa7.67□□□□□ -1.18
CLN3-244ENST00000636147 SMIM26A0A096LP01 95 aa7.67□□□□□ -1.18
CLN3-244ENST00000636147 J3QKU1 62 aa7.67□□□□□ -1.18
CLN3-244ENST00000636147 MIFP14174 115 aa7.67□□□□□ -1.18
CLN3-244ENST00000636147 TRAV10A0A0B4J240 114 aa7.67□□□□□ -1.18
CLN3-244ENST00000636147 LINC00575Q6W349 94 aa7.67□□□□□ -1.18
CLN3-244ENST00000636147 FUSP35637 526 aaKnown RBP eCLIP7.66□□□□□ -1.18
CLN3-244ENST00000636147 ITPR3Q14573 2671 aa7.66□□□□□ -1.18
CLN3-244ENST00000636147 ZNF73O43830 326 aaPredicted RBP7.65□□□□□ -1.18
CLN3-244ENST00000636147 SPART-AS1P0CW21 52 aa7.64□□□□□ -1.19
CLN3-244ENST00000636147 APOC4P55056 127 aa7.64□□□□□ -1.19
CLN3-244ENST00000636147 C10orf25Q5T742 122 aa7.64□□□□□ -1.19
CLN3-244ENST00000636147 COX17Q14061 63 aa7.63□□□□□ -1.19
CLN3-244ENST00000636147 MUC7Q8TAX7 377 aa7.63□□□□□ -1.19
CLN3-244ENST00000636147 UNC79Q9P2D8 2635 aa7.63□□□□□ -1.19
CLN3-244ENST00000636147 FBN2P35556 2912 aa7.62□□□□□ -1.19
CLN3-244ENST00000636147 UBE2BP63146 152 aa7.62□□□□□ -1.19
CLN3-244ENST00000636147 NF1P21359 2839 aa7.62□□□□□ -1.19
CLN3-244ENST00000636147 ATRQ13535 2644 aa7.62□□□□□ -1.19
CLN3-244ENST00000636147 CFAP46Q8IYW2 2715 aa7.62□□□□□ -1.19
CLN3-244ENST00000636147 ETDCA0A1B0GVM5 59 aa7.62□□□□□ -1.19
CLN3-244ENST00000636147 FAM19A3Q7Z5A8 133 aa7.62□□□□□ -1.19
CLN3-244ENST00000636147 TM2D3Q9BRN9 247 aa7.62□□□□□ -1.19
CLN3-244ENST00000636147 CRYBG3Q68DQ2 2970 aa7.61□□□□□ -1.19
CLN3-244ENST00000636147 C22orf24Q9Y442 160 aa7.61□□□□□ -1.19
CLN3-244ENST00000636147 TRBV7-6A0A0J9YX20 115 aa7.61□□□□□ -1.19
CLN3-244ENST00000636147 FAM30AQ9NZY2 134 aa7.61□□□□□ -1.19
CLN3-244ENST00000636147 TMEM254Q8TBM7 123 aa7.61□□□□□ -1.19
CLN3-244ENST00000636147 NDUFC1O43677 76 aa7.6□□□□□ -1.19
CLN3-244ENST00000636147 Q6ZQT0 140 aa7.6□□□□□ -1.19
CLN3-244ENST00000636147 SPATA3Q8NHX4 192 aa7.6□□□□□ -1.19
CLN3-244ENST00000636147 A0A1B0GUV1 79 aa7.6□□□□□ -1.19
CLN3-244ENST00000636147 H3BQ85 93 aa7.6□□□□□ -1.19
CLN3-244ENST00000636147 IGLV1-51P01701 117 aa7.6□□□□□ -1.19
CLN3-244ENST00000636147 M0R2N4 97 aa7.59□□□□□ -1.19
CLN3-244ENST00000636147 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.59□□□□□ -1.19
CLN3-244ENST00000636147 LINC00474Q9P2X8 69 aa7.58□□□□□ -1.2
CLN3-244ENST00000636147 LYRM9A8MSI8 78 aa7.57□□□□□ -1.2
CLN3-244ENST00000636147 LINC00336Q6ZUF6 198 aa7.57□□□□□ -1.2
CLN3-244ENST00000636147 PRO0628Q9UI54 55 aa7.57□□□□□ -1.2
CLN3-244ENST00000636147 NANOS2P60321 138 aaKnown RBP7.57□□□□□ -1.2
CLN3-244ENST00000636147 IGSF10Q6WRI0 2623 aa7.57□□□□□ -1.2
CLN3-244ENST00000636147 RPL37AP8A6NKH3 93 aa7.56□□□□□ -1.2
CLN3-244ENST00000636147 C1orf195Q5TG92 126 aa7.56□□□□□ -1.2
CLN3-244ENST00000636147 CR1P17927 2039 aa7.56□□□□□ -1.2
CLN3-244ENST00000636147 UTP20O75691 2785 aaKnown RBP7.55□□□□□ -1.2
CLN3-244ENST00000636147 H7BZZ5 65 aa7.55□□□□□ -1.2
CLN3-244ENST00000636147 PRYO14603 147 aa7.55□□□□□ -1.2
CLN3-244ENST00000636147 LY6G6DO95868 133 aa7.55□□□□□ -1.2
CLN3-244ENST00000636147 M0R378 163 aa7.54□□□□□ -1.2
CLN3-244ENST00000636147 GIG44P09565 113 aaPredicted RBP7.54□□□□□ -1.2
CLN3-244ENST00000636147 C9orf66Q5T8R8 295 aa7.54□□□□□ -1.2
CLN3-244ENST00000636147 HIGD2AQ9BW72 106 aa7.54□□□□□ -1.2
CLN3-244ENST00000636147 OXTP01178 125 aa7.54□□□□□ -1.2
CLN3-244ENST00000636147 LELP1Q5T871 98 aa7.54□□□□□ -1.2
CLN3-244ENST00000636147 V9GYY9 64 aa7.53□□□□□ -1.2
CLN3-244ENST00000636147 CXCL6P80162 114 aa7.53□□□□□ -1.2
CLN3-244ENST00000636147 WFDC13Q8IUB5 93 aa7.53□□□□□ -1.2
CLN3-244ENST00000636147 BAHCC1Q9P281 2608 aa7.53□□□□□ -1.2
CLN3-244ENST00000636147 PLAC8L1A1L4L8 177 aa7.53□□□□□ -1.2
CLN3-244ENST00000636147 ATP5EP56381 51 aaPredicted RBP7.53□□□□□ -1.2
CLN3-244ENST00000636147 OBSCN-AS1Q96MR7 158 aa7.52□□□□□ -1.21
CLN3-244ENST00000636147 PSPHP1O15172 72 aa7.52□□□□□ -1.21
CLN3-244ENST00000636147 SEC61GP60059 68 aa7.52□□□□□ -1.21
CLN3-244ENST00000636147 A0A096LNT2 108 aa7.52□□□□□ -1.21
CLN3-244ENST00000636147 MP68P56378 58 aa7.51□□□□□ -1.21
CLN3-244ENST00000636147 WFDC10BQ8IUB3 73 aa7.51□□□□□ -1.21
CLN3-244ENST00000636147 A0A096LNI7 61 aa7.51□□□□□ -1.21
CLN3-244ENST00000636147 IL17DQ8TAD2 202 aa7.51□□□□□ -1.21
CLN3-244ENST00000636147 KIAA0087Q14695 138 aa7.51□□□□□ -1.21
CLN3-244ENST00000636147 SYCNQ0VAF6 134 aa7.5□□□□□ -1.21
CLN3-244ENST00000636147 C6orf48Q9UBA6 75 aa7.5□□□□□ -1.21
CLN3-244ENST00000636147 UBR5O95071 2799 aaPredicted RBP7.5□□□□□ -1.21
CLN3-244ENST00000636147 LOC110117498A0A087WWA1 95 aa7.5□□□□□ -1.21
CLN3-244ENST00000636147 DEFB116Q30KQ4 102 aa7.5□□□□□ -1.21
CLN3-244ENST00000636147 SPTSSBQ8NFR3 76 aa7.49□□□□□ -1.21
CLN3-244ENST00000636147 CELSR2Q9HCU4 2923 aa7.49□□□□□ -1.21
CLN3-244ENST00000636147 SETXQ7Z333 2677 aaKnown RBP7.49□□□□□ -1.21
CLN3-244ENST00000636147 MXRA5Q9NR99 2828 aa7.49□□□□□ -1.21
CLN3-244ENST00000636147 Q6ZRU5 148 aa7.49□□□□□ -1.21
CLN3-244ENST00000636147 ESRGQ1W209 222 aa7.49□□□□□ -1.21
CLN3-244ENST00000636147 APCP25054 2843 aa7.48□□□□□ -1.21
CLN3-244ENST00000636147 KPRPQ5T749 579 aaPredicted RBP7.48□□□□□ -1.21
CLN3-244ENST00000636147 IGKV2-24A0A0C4DH68 120 aa7.48□□□□□ -1.21
CLN3-244ENST00000636147 WIPF1O43516 503 aa7.48□□□□□ -1.21
CLN3-244ENST00000636147 SMR3AQ99954 134 aa7.48□□□□□ -1.21
CLN3-244ENST00000636147 KLKP1Q107X0 134 aa7.47□□□□□ -1.21
CLN3-244ENST00000636147 Q5XG85 94 aa7.47□□□□□ -1.21
CLN3-244ENST00000636147 SMIM29Q86T20 159 aa7.47□□□□□ -1.21
CLN3-244ENST00000636147 CSNK1G2-AS1Q8NCQ2 148 aa7.47□□□□□ -1.21
CLN3-244ENST00000636147 PSCAO43653 123 aa7.47□□□□□ -1.21
CLN3-244ENST00000636147 C1orf137Q5JT78 98 aa7.47□□□□□ -1.21
CLN3-244ENST00000636147 X6R8D5 127 aa7.47□□□□□ -1.21
CLN3-244ENST00000636147 A0A0J9YWU9 116 aa7.46□□□□□ -1.21
CLN3-244ENST00000636147 EGFEM1PQ0D2K5 195 aa7.46□□□□□ -1.21
CLN3-244ENST00000636147 TEP1Q99973 2627 aaKnown RBP7.46□□□□□ -1.22
CLN3-244ENST00000636147 FSHBP01225 129 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms