RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 TRAV13-2A0A0B4J235 113 aa7.2□□□□□ -1.26
CUX1-221ENST00000622516 EGFEM1PQ0D2K5 195 aa7.2□□□□□ -1.26
CUX1-221ENST00000622516 UNQ6190/PRO20217Q6UXQ8 127 aa7.2□□□□□ -1.26
CUX1-221ENST00000622516 LYSTQ99698 3801 aa7.2□□□□□ -1.26
CUX1-221ENST00000622516 Q5XG85 94 aa7.19□□□□□ -1.26
CUX1-221ENST00000622516 FAM236AA0A1B0GUQ0 79 aa7.19□□□□□ -1.26
CUX1-221ENST00000622516 FAM236BA0A1B0GV22 79 aa7.19□□□□□ -1.26
CUX1-221ENST00000622516 KLK5Q9Y337 293 aaPredicted RBP7.19□□□□□ -1.26
CUX1-221ENST00000622516 STAB2Q8WWQ8 2551 aa7.18□□□□□ -1.26
CUX1-221ENST00000622516 A0A087WYN8 130 aa7.18□□□□□ -1.26
CUX1-221ENST00000622516 SPAG11BQ08648 103 aa7.18□□□□□ -1.26
CUX1-221ENST00000622516 Q8NDZ9 215 aa7.18□□□□□ -1.26
CUX1-221ENST00000622516 ESRGQ1W209 222 aa7.17□□□□□ -1.26
CUX1-221ENST00000622516 C3orf22Q8N5N4 141 aa7.17□□□□□ -1.26
CUX1-221ENST00000622516 COL7A1Q02388 2944 aa7.17□□□□□ -1.26
CUX1-221ENST00000622516 RPL28P46779 137 aaKnown RBP7.17□□□□□ -1.26
CUX1-221ENST00000622516 H3BT86 120 aa7.17□□□□□ -1.26
CUX1-221ENST00000622516 DEFB121Q5J5C9 76 aa7.17□□□□□ -1.26
CUX1-221ENST00000622516 PRR34Q9NV39 138 aa7.17□□□□□ -1.26
CUX1-221ENST00000622516 DEFB131BA0A096LNP1 70 aa7.16□□□□□ -1.26
CUX1-221ENST00000622516 HIGD2BQ4VC39 106 aa7.16□□□□□ -1.26
CUX1-221ENST00000622516 C11orf45Q8TAV5 145 aa7.16□□□□□ -1.26
CUX1-221ENST00000622516 TENM2Q9NT68 2774 aa7.16□□□□□ -1.26
CUX1-221ENST00000622516 BAALC-AS2P0C853 105 aa7.16□□□□□ -1.26
CUX1-221ENST00000622516 NCR3O14931 201 aa7.15□□□□□ -1.26
CUX1-221ENST00000622516 SLPIP03973 132 aa7.15□□□□□ -1.26
CUX1-221ENST00000622516 HUWE1Q7Z6Z7 4374 aaKnown RBP7.15□□□□□ -1.26
CUX1-221ENST00000622516 UQCRQO14949 82 aa7.15□□□□□ -1.27
CUX1-221ENST00000622516 LECT2O14960 151 aa7.14□□□□□ -1.27
CUX1-221ENST00000622516 C1orf195Q5TG92 126 aa7.14□□□□□ -1.27
CUX1-221ENST00000622516 LINC00336Q6ZUF6 198 aa7.14□□□□□ -1.27
CUX1-221ENST00000622516 LINC01561Q8N1V8 128 aa7.14□□□□□ -1.27
CUX1-221ENST00000622516 XAGE1AQ9HD64 81 aa7.14□□□□□ -1.27
CUX1-221ENST00000622516 GAGE2AQ6NT46 116 aa7.13□□□□□ -1.27
CUX1-221ENST00000622516 DPH3Q96FX2 82 aa7.13□□□□□ -1.27
CUX1-221ENST00000622516 C22orf24Q9Y442 160 aa7.13□□□□□ -1.27
CUX1-221ENST00000622516 CSMD3Q7Z407 3707 aa7.13□□□□□ -1.27
CUX1-221ENST00000622516 C9orf129Q5T035 196 aaKnown RBP7.13□□□□□ -1.27
CUX1-221ENST00000622516 TRBV7-7A0A0K0K1E9 115 aa7.12□□□□□ -1.27
CUX1-221ENST00000622516 FAM236DA0A1B0GTK5 79 aa7.12□□□□□ -1.27
CUX1-221ENST00000622516 TRACP01848 142 aa7.12□□□□□ -1.27
CUX1-221ENST00000622516 FAM236CP0DP71 79 aa7.12□□□□□ -1.27
CUX1-221ENST00000622516 CXCL5P42830 114 aa7.12□□□□□ -1.27
CUX1-221ENST00000622516 DNAL4O96015 105 aa7.12□□□□□ -1.27
CUX1-221ENST00000622516 LINC01600Q96MT4 127 aa7.12□□□□□ -1.27
CUX1-221ENST00000622516 OXTP01178 125 aa7.11□□□□□ -1.27
CUX1-221ENST00000622516 COX17Q14061 63 aa7.11□□□□□ -1.27
CUX1-221ENST00000622516 C6orf48Q9UBA6 75 aa7.11□□□□□ -1.27
CUX1-221ENST00000622516 IGKV2D-24A0A075B6R9 120 aa7.1□□□□□ -1.27
CUX1-221ENST00000622516 FAM240AA0A1B0GVK7 77 aa7.09□□□□□ -1.27
CUX1-221ENST00000622516 K7EIL1 84 aa7.09□□□□□ -1.27
CUX1-221ENST00000622516 RPL18AQ02543 176 aaKnown RBP7.09□□□□□ -1.27
CUX1-221ENST00000622516 H3BNG1 76 aa7.09□□□□□ -1.27
CUX1-221ENST00000622516 S100A7L2Q5SY68 101 aa7.09□□□□□ -1.27
CUX1-221ENST00000622516 C6orf99Q4VX62 202 aa7.08□□□□□ -1.28
CUX1-221ENST00000622516 H0YGX0 51 aa7.08□□□□□ -1.28
CUX1-221ENST00000622516 KRTAP26-1Q6PEX3 210 aa7.08□□□□□ -1.28
CUX1-221ENST00000622516 CAMK2N2Q96S95 79 aa7.08□□□□□ -1.28
CUX1-221ENST00000622516 CRYGAP11844 174 aa7.08□□□□□ -1.28
CUX1-221ENST00000622516 IMUPQ9GZP8 106 aa7.08□□□□□ -1.28
CUX1-221ENST00000622516 Q6ZRU5 148 aa7.07□□□□□ -1.28
CUX1-221ENST00000622516 C15orf56Q8N910 161 aa7.07□□□□□ -1.28
CUX1-221ENST00000622516 NDUFC2O95298 119 aa7.06□□□□□ -1.28
CUX1-221ENST00000622516 TMEM258P61165 79 aa7.06□□□□□ -1.28
CUX1-221ENST00000622516 C14orf132Q9NPU4 83 aa7.06□□□□□ -1.28
CUX1-221ENST00000622516 DNAH10Q8IVF4 4471 aa7.06□□□□□ -1.28
CUX1-221ENST00000622516 COX7CP15954 63 aa7.05□□□□□ -1.28
CUX1-221ENST00000622516 FAM19A1Q7Z5A9 133 aa7.05□□□□□ -1.28
CUX1-221ENST00000622516 DSCR8Q96T75 97 aa7.05□□□□□ -1.28
CUX1-221ENST00000622516 LINC00588Q9Y4M8 146 aa7.05□□□□□ -1.28
CUX1-221ENST00000622516 LINC01556Q5JQF7 62 aa7.04□□□□□ -1.28
CUX1-221ENST00000622516 DNAH7Q8WXX0 4024 aa7.04□□□□□ -1.28
CUX1-221ENST00000622516 CASC10Q5T4H9 136 aa7.04□□□□□ -1.28
CUX1-221ENST00000622516 Q8N814 137 aa7.04□□□□□ -1.28
CUX1-221ENST00000622516 C2orf48Q96LS8 159 aa7.04□□□□□ -1.28
CUX1-221ENST00000622516 TRBV10-3A0A0K0K1G6 114 aa7.03□□□□□ -1.28
CUX1-221ENST00000622516 SMCR5Q8TEV8 140 aa7.03□□□□□ -1.28
CUX1-221ENST00000622516 TM2D3Q9BRN9 247 aa7.03□□□□□ -1.28
CUX1-221ENST00000622516 MDFIQ99750 246 aa7.03□□□□□ -1.28
CUX1-221ENST00000622516 TRAV10A0A0B4J240 114 aa7.02□□□□□ -1.28
CUX1-221ENST00000622516 ACYP1P07311 99 aa7.02□□□□□ -1.28
CUX1-221ENST00000622516 ORMDL1Q9P0S3 153 aa7.02□□□□□ -1.29
CUX1-221ENST00000622516 GVQW2A0A096LPI5 108 aaPredicted RBP7.02□□□□□ -1.29
CUX1-221ENST00000622516 hADV29S1A0JD25 119 aa7.02□□□□□ -1.29
CUX1-221ENST00000622516 Q6ZRP5 223 aa7.01□□□□□ -1.29
CUX1-221ENST00000622516 DNAH9Q9NYC9 4486 aa7.01□□□□□ -1.29
CUX1-221ENST00000622516 A0A0U1RQV1 116 aa7.01□□□□□ -1.29
CUX1-221ENST00000622516 LINC00643Q86TS7 51 aa7.01□□□□□ -1.29
CUX1-221ENST00000622516 DNAH1Q9P2D7 4330 aa7□□□□□ -1.29
CUX1-221ENST00000622516 IGLV6-57P01721 117 aa7□□□□□ -1.29
CUX1-221ENST00000622516 DNAH10OSP0CZ25 163 aa7□□□□□ -1.29
CUX1-221ENST00000622516 INAFM2P0DMQ5 153 aa6.99□□□□□ -1.29
CUX1-221ENST00000622516 NDUFC2-KCTD14E9PQ53 114 aa6.99□□□□□ -1.29
CUX1-221ENST00000622516 SYCNQ0VAF6 134 aa6.98□□□□□ -1.29
CUX1-221ENST00000622516 LINC00575Q6W349 94 aa6.98□□□□□ -1.29
CUX1-221ENST00000622516 CYSTM1Q9H1C7 97 aa6.98□□□□□ -1.29
CUX1-221ENST00000622516 TRAV23DV6A0A075B6W5 121 aa6.98□□□□□ -1.29
CUX1-221ENST00000622516 ATOX1O00244 68 aa6.98□□□□□ -1.29
CUX1-221ENST00000622516 VPREB1P12018 145 aa6.97□□□□□ -1.29
CUX1-221ENST00000622516 USP17L23D6RBM5 183 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms