RNA–Protein interactions for RNA: ENST00000615843.4

SPAST-203, Transcript of spastin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SPAST, Length 5,212 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPAST-203ENST00000615843 CENPFP49454 3210 aa12.96□□□□□ -0.34
SPAST-203ENST00000615843 Q8NBF4 154 aa12.96□□□□□ -0.34
SPAST-203ENST00000615843 LINC01556Q5JQF7 62 aa12.95□□□□□ -0.34
SPAST-203ENST00000615843 USP9YO00507 2555 aaPredicted RBP12.94□□□□□ -0.34
SPAST-203ENST00000615843 PKD1L2Q7Z442 2459 aa12.94□□□□□ -0.34
SPAST-203ENST00000615843 LINC00167Q96N53 147 aa12.94□□□□□ -0.34
SPAST-203ENST00000615843 SPAG11AQ6PDA7 123 aa12.93□□□□□ -0.34
SPAST-203ENST00000615843 SMR3AQ99954 134 aa12.93□□□□□ -0.34
SPAST-203ENST00000615843 TP53AIP1Q9HCN2 124 aa12.93□□□□□ -0.34
SPAST-203ENST00000615843 H3BPC8 53 aa12.92□□□□□ -0.34
SPAST-203ENST00000615843 ZNF462Q96JM2 2506 aa12.92□□□□□ -0.34
SPAST-203ENST00000615843 EIF4EBP3O60516 100 aaPredicted RBP12.92□□□□□ -0.34
SPAST-203ENST00000615843 PIEZO1Q92508 2521 aa12.91□□□□□ -0.34
SPAST-203ENST00000615843 A0A1B0GU69 56 aa12.9□□□□□ -0.34
SPAST-203ENST00000615843 JMJD1CQ15652 2540 aa12.9□□□□□ -0.34
SPAST-203ENST00000615843 ERC2-IT1O76042 136 aa12.89□□□□□ -0.35
SPAST-203ENST00000615843 KLK9Q2XQG4 91 aa12.88□□□□□ -0.35
SPAST-203ENST00000615843 EP400Q96L91 3159 aa12.87□□□□□ -0.35
SPAST-203ENST00000615843 Q6ZRX8 168 aa12.87□□□□□ -0.35
SPAST-203ENST00000615843 LINC00476Q8WZB0 136 aa12.87□□□□□ -0.35
SPAST-203ENST00000615843 MUC4Q99102 2169 aa12.87□□□□□ -0.35
SPAST-203ENST00000615843 FSHBP01225 129 aa12.86□□□□□ -0.35
SPAST-203ENST00000615843 KLKP1Q107X0 134 aa12.85□□□□□ -0.35
SPAST-203ENST00000615843 ACYP2P14621 99 aa12.85□□□□□ -0.35
SPAST-203ENST00000615843 X6R8D5 127 aa12.85□□□□□ -0.35
SPAST-203ENST00000615843 TRAV22A0A0B4J277 110 aa12.84□□□□□ -0.35
SPAST-203ENST00000615843 CEP295Q9C0D2 2601 aa12.84□□□□□ -0.35
SPAST-203ENST00000615843 LINC00336Q6ZUF6 198 aa12.83□□□□□ -0.36
SPAST-203ENST00000615843 SERTAD4-AS1Q5TG53 156 aa12.82□□□□□ -0.36
SPAST-203ENST00000615843 A8MUN3 132 aa12.82□□□□□ -0.36
SPAST-203ENST00000615843 IGLV6-57P01721 117 aa12.82□□□□□ -0.36
SPAST-203ENST00000615843 LY6G6CO95867 125 aa12.82□□□□□ -0.36
SPAST-203ENST00000615843 ST20-AS1Q8NBB2 130 aa12.81□□□□□ -0.36
SPAST-203ENST00000615843 IGKV2D-30A0A075B6S6 120 aa12.8□□□□□ -0.36
SPAST-203ENST00000615843 IGKV2-30P06310 120 aa12.8□□□□□ -0.36
SPAST-203ENST00000615843 IGLV5-52A0A0A0MRZ9 124 aa12.79□□□□□ -0.36
SPAST-203ENST00000615843 COL27A1Q8IZC6 1860 aaPredicted RBP12.79□□□□□ -0.36
SPAST-203ENST00000615843 NUPR2A6NF83 97 aa12.79□□□□□ -0.36
SPAST-203ENST00000615843 TRBV7-4A0A0J9YYF1 115 aa12.78□□□□□ -0.36
SPAST-203ENST00000615843 GVQW2A0A096LPI5 108 aaPredicted RBP12.77□□□□□ -0.36
SPAST-203ENST00000615843 H7BZZ5 65 aa12.77□□□□□ -0.36
SPAST-203ENST00000615843 RPL37AP61513 92 aaKnown RBP12.77□□□□□ -0.36
SPAST-203ENST00000615843 ANKRD11Q6UB99 2663 aaPredicted RBP12.77□□□□□ -0.37
SPAST-203ENST00000615843 ZFYVE26Q68DK2 2539 aa12.77□□□□□ -0.37
SPAST-203ENST00000615843 C7orf65Q6ZTY9 151 aa12.76□□□□□ -0.37
SPAST-203ENST00000615843 K7EQZ3 153 aa12.75□□□□□ -0.37
SPAST-203ENST00000615843 VPREB1P12018 145 aa12.75□□□□□ -0.37
SPAST-203ENST00000615843 ATP11AUNQ6ZP68 121 aa12.74□□□□□ -0.37
SPAST-203ENST00000615843 C8orf87E5RJ46 101 aa12.73□□□□□ -0.37
SPAST-203ENST00000615843 CYP4F30PQ9H0H9 118 aa12.73□□□□□ -0.37
SPAST-203ENST00000615843 MOBPQ13875 183 aa12.72□□□□□ -0.37
SPAST-203ENST00000615843 LRRK2Q5S007 2527 aa12.72□□□□□ -0.37
SPAST-203ENST00000615843 H3BNG1 76 aa12.71□□□□□ -0.38
SPAST-203ENST00000615843 COA5Q86WW8 74 aa12.69□□□□□ -0.38
SPAST-203ENST00000615843 Q6ZRP5 223 aa12.69□□□□□ -0.38
SPAST-203ENST00000615843 LINC00528Q8N1L1 170 aa12.66□□□□□ -0.38
SPAST-203ENST00000615843 EPM2AB3EWF7 344 aa12.66□□□□□ -0.38
SPAST-203ENST00000615843 C9orf129Q5T035 196 aaKnown RBP12.66□□□□□ -0.38
SPAST-203ENST00000615843 A8MWP4 228 aa12.65□□□□□ -0.39
SPAST-203ENST00000615843 PHF5AQ7RTV0 110 aaKnown RBP12.64□□□□□ -0.39
SPAST-203ENST00000615843 MTORP42345 2549 aa12.64□□□□□ -0.39
SPAST-203ENST00000615843 COL4A2P08572 1712 aa12.6□□□□□ -0.39
SPAST-203ENST00000615843 LOC101927531A0A1B0GV80 90 aa12.6□□□□□ -0.39
SPAST-203ENST00000615843 CD164Q04900 197 aa12.6□□□□□ -0.39
SPAST-203ENST00000615843 Q8NAQ8 132 aa12.6□□□□□ -0.39
SPAST-203ENST00000615843 KCNQ1DNQ9H478 68 aa12.6□□□□□ -0.39
SPAST-203ENST00000615843 PCSK5Q92824 1860 aa12.59□□□□□ -0.39
SPAST-203ENST00000615843 IGLV8-61A0A075B6I0 122 aa12.58□□□□□ -0.39
SPAST-203ENST00000615843 C16orf90A8MZG2 172 aa12.58□□□□□ -0.4
SPAST-203ENST00000615843 C1orf134Q5TEV5 83 aa12.58□□□□□ -0.4
SPAST-203ENST00000615843 FAM168BA1KXE4 195 aa12.56□□□□□ -0.4
SPAST-203ENST00000615843 SPACA4Q8TDM5 124 aa12.56□□□□□ -0.4
SPAST-203ENST00000615843 LINC01600Q96MT4 127 aa12.56□□□□□ -0.4
SPAST-203ENST00000615843 IGLV1-50A0A075B6I6 118 aa12.55□□□□□ -0.4
SPAST-203ENST00000615843 LINC00313P59037 77 aa12.54□□□□□ -0.4
SPAST-203ENST00000615843 Q8N377 158 aa12.52□□□□□ -0.4
SPAST-203ENST00000615843 MRPL34Q9BQ48 92 aaKnown RBP12.52□□□□□ -0.4
SPAST-203ENST00000615843 IGFL1Q6UW32 110 aa12.52□□□□□ -0.41
SPAST-203ENST00000615843 CSNK1G2-AS1Q8NCQ2 148 aa12.52□□□□□ -0.41
SPAST-203ENST00000615843 POLQO75417 2590 aa12.51□□□□□ -0.41
SPAST-203ENST00000615843 PRR15Q8IV56 129 aa12.51□□□□□ -0.41
SPAST-203ENST00000615843 KTN1-AS1Q86SY8 53 aa12.5□□□□□ -0.41
SPAST-203ENST00000615843 SPTBN4Q9H254 2564 aa12.49□□□□□ -0.41
SPAST-203ENST00000615843 WIPF1O43516 503 aa12.49□□□□□ -0.41
SPAST-203ENST00000615843 LINC00588Q9Y4M8 146 aa12.49□□□□□ -0.41
SPAST-203ENST00000615843 OBSCN-AS1Q96MR7 158 aa12.48□□□□□ -0.41
SPAST-203ENST00000615843 UQCR11O14957 56 aa12.48□□□□□ -0.41
SPAST-203ENST00000615843 CHTF8P0CG12 524 aa12.47□□□□□ -0.41
SPAST-203ENST00000615843 PRR34Q9NV39 138 aa12.47□□□□□ -0.41
SPAST-203ENST00000615843 MDFIQ99750 246 aa12.46□□□□□ -0.41
SPAST-203ENST00000615843 CHD8Q9HCK8 2581 aa12.46□□□□□ -0.41
SPAST-203ENST00000615843 FAM229AH3BQW9 127 aa12.45□□□□□ -0.42
SPAST-203ENST00000615843 DNAH10OSP0CZ25 163 aa12.45□□□□□ -0.42
SPAST-203ENST00000615843 ZNF575Q86XF7 245 aa12.44□□□□□ -0.42
SPAST-203ENST00000615843 ANKRD17O75179 2603 aaKnown RBP12.42□□□□□ -0.42
SPAST-203ENST00000615843 C8orf17Q9NRJ1 99 aa12.42□□□□□ -0.42
SPAST-203ENST00000615843 C15orf56Q8N910 161 aa12.41□□□□□ -0.42
SPAST-203ENST00000615843 GOLGB1Q14789 3259 aaKnown RBP12.41□□□□□ -0.42
SPAST-203ENST00000615843 SPINT4Q6UDR6 99 aa12.4□□□□□ -0.42
SPAST-203ENST00000615843 A0A0G2JQZ4 141 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms