RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 XGP55808 180 aa11.33□□□□□ -0.6
SHKBP1-216ENST00000598201 Q9HAA7 133 aa11.33□□□□□ -0.6
SHKBP1-216ENST00000598201 C6orf48Q9UBA6 75 aa11.33□□□□□ -0.6
SHKBP1-216ENST00000598201 Q8NDZ9 215 aa11.32□□□□□ -0.6
SHKBP1-216ENST00000598201 RPL28P46779 137 aaKnown RBP11.32□□□□□ -0.6
SHKBP1-216ENST00000598201 SMIM11BQ8TCY0 68 aa11.32□□□□□ -0.6
SHKBP1-216ENST00000598201 GVQW2A0A096LPI5 108 aaPredicted RBP11.31□□□□□ -0.6
SHKBP1-216ENST00000598201 ZNF561-AS1K7EIQ3 104 aa11.31□□□□□ -0.6
SHKBP1-216ENST00000598201 SMIM20Q8N5G0 67 aa11.31□□□□□ -0.6
SHKBP1-216ENST00000598201 OR13C6PQ8NH95 151 aa11.3□□□□□ -0.6
SHKBP1-216ENST00000598201 DNAH1Q9P2D7 4330 aa11.29□□□□□ -0.6
SHKBP1-216ENST00000598201 TRBV10-2A0A0K0K1G8 114 aa11.29□□□□□ -0.6
SHKBP1-216ENST00000598201 ANKRD29Q8N6D5 301 aa11.29□□□□□ -0.6
SHKBP1-216ENST00000598201 MUC7Q8TAX7 377 aa11.29□□□□□ -0.6
SHKBP1-216ENST00000598201 TEN1Q86WV5 123 aa11.29□□□□□ -0.6
SHKBP1-216ENST00000598201 FAM218AQ96MZ4 157 aa11.29□□□□□ -0.6
SHKBP1-216ENST00000598201 NDUFC2O95298 119 aa11.28□□□□□ -0.6
SHKBP1-216ENST00000598201 PPDPFLQ8WWR9 84 aa11.28□□□□□ -0.6
SHKBP1-216ENST00000598201 CAMK2N2Q96S95 79 aa11.28□□□□□ -0.6
SHKBP1-216ENST00000598201 DNAH7Q8WXX0 4024 aa11.28□□□□□ -0.6
SHKBP1-216ENST00000598201 M0QXV9 152 aa11.28□□□□□ -0.6
SHKBP1-216ENST00000598201 CARD19Q96LW7 228 aa11.28□□□□□ -0.6
SHKBP1-216ENST00000598201 Q6ZRU5 148 aa11.27□□□□□ -0.61
SHKBP1-216ENST00000598201 UPK3BQ9BT76 320 aa11.27□□□□□ -0.61
SHKBP1-216ENST00000598201 LINC01600Q96MT4 127 aa11.26□□□□□ -0.61
SHKBP1-216ENST00000598201 NCR3O14931 201 aa11.25□□□□□ -0.61
SHKBP1-216ENST00000598201 CASC10Q5T4H9 136 aa11.24□□□□□ -0.61
SHKBP1-216ENST00000598201 C2orf48Q96LS8 159 aa11.24□□□□□ -0.61
SHKBP1-216ENST00000598201 Q6Q795 121 aa11.24□□□□□ -0.61
SHKBP1-216ENST00000598201 XAGE1AQ9HD64 81 aa11.24□□□□□ -0.61
SHKBP1-216ENST00000598201 CSMD3Q7Z407 3707 aa11.24□□□□□ -0.61
SHKBP1-216ENST00000598201 DYNC2H1Q8NCM8 4307 aaKnown RBP11.23□□□□□ -0.61
SHKBP1-216ENST00000598201 LYSTQ99698 3801 aa11.23□□□□□ -0.61
SHKBP1-216ENST00000598201 NUPR2A6NF83 97 aa11.23□□□□□ -0.61
SHKBP1-216ENST00000598201 NDUFV3P56181 108 aaKnown RBP11.23□□□□□ -0.61
SHKBP1-216ENST00000598201 APLNQ9ULZ1 77 aa11.23□□□□□ -0.61
SHKBP1-216ENST00000598201 C3orf84H3BNL1 204 aa11.22□□□□□ -0.61
SHKBP1-216ENST00000598201 H3BT86 120 aa11.21□□□□□ -0.61
SHKBP1-216ENST00000598201 TRACP01848 142 aa11.21□□□□□ -0.61
SHKBP1-216ENST00000598201 A0A087WYN8 130 aa11.2□□□□□ -0.62
SHKBP1-216ENST00000598201 TMEM126AQ9H061 195 aa11.2□□□□□ -0.62
SHKBP1-216ENST00000598201 TEX49A0A1B0GTD5 131 aa11.19□□□□□ -0.62
SHKBP1-216ENST00000598201 KRTAP1-5Q9BYS1 174 aa11.19□□□□□ -0.62
SHKBP1-216ENST00000598201 H0YGX0 51 aa11.18□□□□□ -0.62
SHKBP1-216ENST00000598201 SYCNQ0VAF6 134 aa11.18□□□□□ -0.62
SHKBP1-216ENST00000598201 GAGE2BQ13066 116 aa11.18□□□□□ -0.62
SHKBP1-216ENST00000598201 GAGE2EQ4V326 116 aa11.18□□□□□ -0.62
SHKBP1-216ENST00000598201 GAGE2DQ9UEU5 116 aa11.18□□□□□ -0.62
SHKBP1-216ENST00000598201 USP17L23D6RBM5 183 aa11.18□□□□□ -0.62
SHKBP1-216ENST00000598201 RPL18AQ02543 176 aaKnown RBP11.18□□□□□ -0.62
SHKBP1-216ENST00000598201 NDUFC2-KCTD14E9PQ53 114 aa11.17□□□□□ -0.62
SHKBP1-216ENST00000598201 SLPIP03973 132 aa11.17□□□□□ -0.62
SHKBP1-216ENST00000598201 F8WDY8 70 aa11.16□□□□□ -0.62
SHKBP1-216ENST00000598201 CCDC179H3BU77 68 aa11.16□□□□□ -0.62
SHKBP1-216ENST00000598201 S100A7L2Q5SY68 101 aa11.16□□□□□ -0.62
SHKBP1-216ENST00000598201 STARD9Q9P2P6 4700 aa11.16□□□□□ -0.62
SHKBP1-216ENST00000598201 C5orf47Q569G3 176 aa11.16□□□□□ -0.62
SHKBP1-216ENST00000598201 Q6ZRP5 223 aa11.16□□□□□ -0.62
SHKBP1-216ENST00000598201 RMI2Q96E14 147 aa11.16□□□□□ -0.62
SHKBP1-216ENST00000598201 TTC32Q5I0X7 151 aa11.15□□□□□ -0.62
SHKBP1-216ENST00000598201 LECT2O14960 151 aa11.15□□□□□ -0.63
SHKBP1-216ENST00000598201 IGLV6-57P01721 117 aa11.14□□□□□ -0.63
SHKBP1-216ENST00000598201 BAALC-AS2P0C853 105 aa11.14□□□□□ -0.63
SHKBP1-216ENST00000598201 UBE2DNLQ8IWF7 75 aa11.14□□□□□ -0.63
SHKBP1-216ENST00000598201 C22orf24Q9Y442 160 aa11.14□□□□□ -0.63
SHKBP1-216ENST00000598201 SNCGO76070 127 aa11.13□□□□□ -0.63
SHKBP1-216ENST00000598201 PLECQ15149 4684 aaKnown RBP11.13□□□□□ -0.63
SHKBP1-216ENST00000598201 TENM2Q9NT68 2774 aa11.13□□□□□ -0.63
SHKBP1-216ENST00000598201 VPREB1P12018 145 aa11.13□□□□□ -0.63
SHKBP1-216ENST00000598201 C6orf99Q4VX62 202 aa11.12□□□□□ -0.63
SHKBP1-216ENST00000598201 TRBV10-3A0A0K0K1G6 114 aa11.11□□□□□ -0.63
SHKBP1-216ENST00000598201 DNAH10Q8IVF4 4471 aa11.11□□□□□ -0.63
SHKBP1-216ENST00000598201 C9orf129Q5T035 196 aaKnown RBP11.1□□□□□ -0.63
SHKBP1-216ENST00000598201 DNAL4O96015 105 aa11.1□□□□□ -0.63
SHKBP1-216ENST00000598201 TLX1NBP0CAT3 122 aa11.07□□□□□ -0.64
SHKBP1-216ENST00000598201 Q8N814 137 aa11.06□□□□□ -0.64
SHKBP1-216ENST00000598201 TRAV23DV6A0A075B6W5 121 aa11.05□□□□□ -0.64
SHKBP1-216ENST00000598201 M0R378 163 aa11.05□□□□□ -0.64
SHKBP1-216ENST00000598201 LINC00167Q96N53 147 aa11.05□□□□□ -0.64
SHKBP1-216ENST00000598201 SERTAD4-AS1Q5TG53 156 aa11.04□□□□□ -0.64
SHKBP1-216ENST00000598201 LINC00575Q6W349 94 aa11.04□□□□□ -0.64
SHKBP1-216ENST00000598201 A0A1B0GX51 115 aa11.03□□□□□ -0.64
SHKBP1-216ENST00000598201 ORMDL1Q9P0S3 153 aa11.02□□□□□ -0.65
SHKBP1-216ENST00000598201 PSCAO43653 123 aa11.01□□□□□ -0.65
SHKBP1-216ENST00000598201 ZNF73O43830 326 aaPredicted RBP11.01□□□□□ -0.65
SHKBP1-216ENST00000598201 DIRC1Q969H9 104 aa11□□□□□ -0.65
SHKBP1-216ENST00000598201 FAM168BA1KXE4 195 aa11□□□□□ -0.65
SHKBP1-216ENST00000598201 NBDYA0A0U1RRE5 68 aa10.99□□□□□ -0.65
SHKBP1-216ENST00000598201 VPS13DQ5THJ4 4388 aa10.99□□□□□ -0.65
SHKBP1-216ENST00000598201 LY6G6CO95867 125 aa10.99□□□□□ -0.65
SHKBP1-216ENST00000598201 LINC00476Q8WZB0 136 aa10.99□□□□□ -0.65
SHKBP1-216ENST00000598201 hADV29S1A0JD25 119 aa10.98□□□□□ -0.65
SHKBP1-216ENST00000598201 KRTAP7-1Q8IUC3 87 aa10.98□□□□□ -0.65
SHKBP1-216ENST00000598201 NKAPP1Q8N9T2 125 aa10.97□□□□□ -0.65
SHKBP1-216ENST00000598201 C7orf33Q8WU49 177 aa10.97□□□□□ -0.65
SHKBP1-216ENST00000598201 PLA2G2DQ9UNK4 145 aa10.97□□□□□ -0.65
SHKBP1-216ENST00000598201 LOC107984640A0A0U1RRK4 108 aa10.96□□□□□ -0.65
SHKBP1-216ENST00000598201 OBSCN-AS1Q96MR7 158 aa10.96□□□□□ -0.65
SHKBP1-216ENST00000598201 ELOF1P60002 83 aaKnown RBP10.96□□□□□ -0.66
SHKBP1-216ENST00000598201 COX7BP24311 80 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 101.2 ms