RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 MUSTN1Q8IVN3 82 aa10.33□□□□□ -0.76
SS18-211ENST00000578954 A0A096LNI7 61 aa10.32□□□□□ -0.76
SS18-211ENST00000578954 CTAG1AP78358 180 aa10.32□□□□□ -0.76
SS18-211ENST00000578954 LINC01620Q4KN68 170 aa10.32□□□□□ -0.76
SS18-211ENST00000578954 GAGE2EQ4V326 116 aa10.32□□□□□ -0.76
SS18-211ENST00000578954 C9orf129Q5T035 196 aaKnown RBP10.32□□□□□ -0.76
SS18-211ENST00000578954 CEND1Q8N111 149 aa10.32□□□□□ -0.76
SS18-211ENST00000578954 XAGE1AQ9HD64 81 aa10.32□□□□□ -0.76
SS18-211ENST00000578954 GAGE2DQ9UEU5 116 aa10.32□□□□□ -0.76
SS18-211ENST00000578954 GAGE2BQ13066 116 aa10.31□□□□□ -0.76
SS18-211ENST00000578954 NPC2P61916 151 aa10.3□□□□□ -0.76
SS18-211ENST00000578954 PLA2G2DQ9UNK4 145 aa10.3□□□□□ -0.76
SS18-211ENST00000578954 NDUFC2O95298 119 aa10.29□□□□□ -0.76
SS18-211ENST00000578954 RPL24P83731 157 aaKnown RBP10.29□□□□□ -0.76
SS18-211ENST00000578954 LINC00474Q9P2X8 69 aa10.29□□□□□ -0.76
SS18-211ENST00000578954 FXYD2P54710 66 aa10.28□□□□□ -0.76
SS18-211ENST00000578954 Q8NDZ9 215 aa10.28□□□□□ -0.76
SS18-211ENST00000578954 BVES-AS1Q5T3Y7 98 aa10.27□□□□□ -0.77
SS18-211ENST00000578954 SPACA4Q8TDM5 124 aa10.27□□□□□ -0.77
SS18-211ENST00000578954 DNAH8Q96JB1 4490 aa10.27□□□□□ -0.77
SS18-211ENST00000578954 IGLV5-37A0A075B6J1 123 aa10.26□□□□□ -0.77
SS18-211ENST00000578954 IGKV2-24A0A0C4DH68 120 aa10.26□□□□□ -0.77
SS18-211ENST00000578954 A4D1N5 150 aa10.26□□□□□ -0.77
SS18-211ENST00000578954 M0R143 59 aa10.26□□□□□ -0.77
SS18-211ENST00000578954 CHTF8P0CG12 524 aa10.26□□□□□ -0.77
SS18-211ENST00000578954 VPREB1P12018 145 aa10.26□□□□□ -0.77
SS18-211ENST00000578954 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.26□□□□□ -0.77
SS18-211ENST00000578954 PCP4L1A6NKN8 68 aa10.25□□□□□ -0.77
SS18-211ENST00000578954 EPM2AB3EWF7 344 aa10.25□□□□□ -0.77
SS18-211ENST00000578954 PANO1I0J062 215 aa10.25□□□□□ -0.77
SS18-211ENST00000578954 Q6ZSA8 131 aa10.25□□□□□ -0.77
SS18-211ENST00000578954 KRTAP7-1Q8IUC3 87 aa10.25□□□□□ -0.77
SS18-211ENST00000578954 TMEM238LA0A1B0GVL6 79 aa10.24□□□□□ -0.77
SS18-211ENST00000578954 A6NJY4 79 aa10.24□□□□□ -0.77
SS18-211ENST00000578954 HINT1P49773 126 aaPredicted RBP10.24□□□□□ -0.77
SS18-211ENST00000578954 KRTAP10-1P60331 282 aa10.24□□□□□ -0.77
SS18-211ENST00000578954 SERTAD4-AS1Q5TG53 156 aa10.24□□□□□ -0.77
SS18-211ENST00000578954 DYNC1H1Q14204 4646 aaKnown RBP10.24□□□□□ -0.77
SS18-211ENST00000578954 IGKV2-28A0A075B6P5 120 aa10.23□□□□□ -0.77
SS18-211ENST00000578954 IGKV2D-28P01615 120 aa10.23□□□□□ -0.77
SS18-211ENST00000578954 TRBV10-2A0A0K0K1G8 114 aa10.22□□□□□ -0.77
SS18-211ENST00000578954 A0A1B0GWB2 263 aa10.22□□□□□ -0.77
SS18-211ENST00000578954 A0A1W2PNN7 141 aa10.22□□□□□ -0.77
SS18-211ENST00000578954 FAM168BA1KXE4 195 aa10.22□□□□□ -0.77
SS18-211ENST00000578954 PKHD1P08F94 4074 aa10.22□□□□□ -0.77
SS18-211ENST00000578954 LRP1BQ9NZR2 4599 aa10.21□□□□□ -0.77
SS18-211ENST00000578954 A0A0B4J2C4 111 aa10.21□□□□□ -0.77
SS18-211ENST00000578954 CFC1BP0CG36 223 aa10.2□□□□□ -0.78
SS18-211ENST00000578954 CFC1P0CG37 223 aa10.2□□□□□ -0.78
SS18-211ENST00000578954 PLAC8Q9NZF1 115 aa10.2□□□□□ -0.78
SS18-211ENST00000578954 FAM30AQ9NZY2 134 aa10.19□□□□□ -0.78
SS18-211ENST00000578954 A0A087WYN8 130 aa10.18□□□□□ -0.78
SS18-211ENST00000578954 M0R378 163 aa10.18□□□□□ -0.78
SS18-211ENST00000578954 NCR3O14931 201 aa10.18□□□□□ -0.78
SS18-211ENST00000578954 PRR3P79522 188 aaKnown RBP10.18□□□□□ -0.78
SS18-211ENST00000578954 FAM19A5Q7Z5A7 132 aaPredicted RBP10.18□□□□□ -0.78
SS18-211ENST00000578954 LINC00337Q8N6G1 96 aa10.18□□□□□ -0.78
SS18-211ENST00000578954 SNHG12Q9BXW3 62 aa10.18□□□□□ -0.78
SS18-211ENST00000578954 NHP2Q9NX24 153 aaKnown RBP10.18□□□□□ -0.78
SS18-211ENST00000578954 C22orf24Q9Y442 160 aa10.18□□□□□ -0.78
SS18-211ENST00000578954 NKAPP1Q8N9T2 125 aa10.17□□□□□ -0.78
SS18-211ENST00000578954 TRAV13-2A0A0B4J235 113 aa10.16□□□□□ -0.78
SS18-211ENST00000578954 A6NDN8 102 aa10.16□□□□□ -0.78
SS18-211ENST00000578954 M0QXV9 152 aa10.16□□□□□ -0.78
SS18-211ENST00000578954 C7orf33Q8WU49 177 aa10.16□□□□□ -0.78
SS18-211ENST00000578954 IGLV6-57P01721 117 aa10.15□□□□□ -0.78
SS18-211ENST00000578954 MRPL55Q7Z7F7 128 aaKnown RBP10.15□□□□□ -0.78
SS18-211ENST00000578954 RAB37Q96AX2 223 aa10.14□□□□□ -0.79
SS18-211ENST00000578954 K7ERJ3 54 aa10.13□□□□□ -0.79
SS18-211ENST00000578954 BATFQ16520 125 aa10.13□□□□□ -0.79
SS18-211ENST00000578954 LBHQ53QV2 105 aaPredicted RBP10.13□□□□□ -0.79
SS18-211ENST00000578954 CIRBP-AS1Q8TBR5 109 aa10.13□□□□□ -0.79
SS18-211ENST00000578954 DPH3Q96FX2 82 aa10.13□□□□□ -0.79
SS18-211ENST00000578954 LINC00167Q96N53 147 aa10.13□□□□□ -0.79
SS18-211ENST00000578954 TMEM126AQ9H061 195 aa10.13□□□□□ -0.79
SS18-211ENST00000578954 PRO1854Q9UHT4 67 aa10.13□□□□□ -0.79
SS18-211ENST00000578954 TRBV10-3A0A0K0K1G6 114 aa10.12□□□□□ -0.79
SS18-211ENST00000578954 SCXQ7RTU7 201 aa10.12□□□□□ -0.79
SS18-211ENST00000578954 RPL13AP40429 203 aaKnown RBP10.11□□□□□ -0.79
SS18-211ENST00000578954 PHF5AQ7RTV0 110 aaKnown RBP10.11□□□□□ -0.79
SS18-211ENST00000578954 IGLV1-50A0A075B6I6 118 aa10.1□□□□□ -0.79
SS18-211ENST00000578954 S100A7L2Q5SY68 101 aa10.1□□□□□ -0.79
SS18-211ENST00000578954 OR13C6PQ8NH95 151 aa10.1□□□□□ -0.79
SS18-211ENST00000578954 GAGE10A6NGK3 116 aa10.09□□□□□ -0.79
SS18-211ENST00000578954 KCNQ1DNQ9H478 68 aa10.09□□□□□ -0.79
SS18-211ENST00000578954 APOBP04114 4563 aaKnown RBP10.09□□□□□ -0.79
SS18-211ENST00000578954 CBY1Q9Y3M2 126 aa10.08□□□□□ -0.8
SS18-211ENST00000578954 PRYO14603 147 aa10.07□□□□□ -0.8
SS18-211ENST00000578954 COL5A1-AS1Q5SY13 56 aa10.07□□□□□ -0.8
SS18-211ENST00000578954 TRAV23DV6A0A075B6W5 121 aa10.06□□□□□ -0.8
SS18-211ENST00000578954 RPL37AP8A6NKH3 93 aa10.06□□□□□ -0.8
SS18-211ENST00000578954 TSPAN13O95857 204 aa10.06□□□□□ -0.8
SS18-211ENST00000578954 RPL28P46779 137 aaKnown RBP10.06□□□□□ -0.8
SS18-211ENST00000578954 XGP55808 180 aa10.06□□□□□ -0.8
SS18-211ENST00000578954 KRTAP11-1Q8IUC1 163 aa10.06□□□□□ -0.8
SS18-211ENST00000578954 TAX1BP3O14907 124 aa10.05□□□□□ -0.8
SS18-211ENST00000578954 SPRR1AP35321 89 aa10.05□□□□□ -0.8
SS18-211ENST00000578954 SMIM11BQ8TCY0 68 aa10.05□□□□□ -0.8
SS18-211ENST00000578954 UBE2BP63146 152 aa10.04□□□□□ -0.8
SS18-211ENST00000578954 H7C2G1 150 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms