RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 TENM3Q9P273 2699 aa8.45□□□□□ -1.06
LDLR-205ENST00000557933 CCKP06307 115 aa8.44□□□□□ -1.06
LDLR-205ENST00000557933 CRYGAP11844 174 aa8.44□□□□□ -1.06
LDLR-205ENST00000557933 TRAV25A0A0B4J276 109 aa8.44□□□□□ -1.06
LDLR-205ENST00000557933 IGLV1-51P01701 117 aa8.44□□□□□ -1.06
LDLR-205ENST00000557933 C4orf26Q17RF5 130 aa8.43□□□□□ -1.06
LDLR-205ENST00000557933 CSMD3Q7Z407 3707 aa8.43□□□□□ -1.06
LDLR-205ENST00000557933 OBSCN-AS1Q96MR7 158 aa8.43□□□□□ -1.06
LDLR-205ENST00000557933 OVOL2Q9BRP0 275 aa8.43□□□□□ -1.06
LDLR-205ENST00000557933 SNURFQ9Y675 71 aa8.43□□□□□ -1.06
LDLR-205ENST00000557933 REG3AQ06141 175 aa8.42□□□□□ -1.06
LDLR-205ENST00000557933 NBEAL1Q6ZS30 2694 aa8.42□□□□□ -1.06
LDLR-205ENST00000557933 FLNBO75369 2602 aaKnown RBP8.42□□□□□ -1.06
LDLR-205ENST00000557933 UPK3BQ9BT76 320 aa8.42□□□□□ -1.06
LDLR-205ENST00000557933 KIAA0087Q14695 138 aa8.41□□□□□ -1.06
LDLR-205ENST00000557933 Q6ZQY7 126 aa8.41□□□□□ -1.06
LDLR-205ENST00000557933 DPH3Q96FX2 82 aa8.41□□□□□ -1.06
LDLR-205ENST00000557933 HRCT1Q6UXD1 115 aa8.4□□□□□ -1.06
LDLR-205ENST00000557933 Q8IZM0 81 aa8.4□□□□□ -1.06
LDLR-205ENST00000557933 KLK12Q9UKR0 248 aa8.4□□□□□ -1.06
LDLR-205ENST00000557933 CELA1Q9UNI1 258 aa8.4□□□□□ -1.07
LDLR-205ENST00000557933 SMIM9A6NGZ8 99 aa8.39□□□□□ -1.07
LDLR-205ENST00000557933 STAB1Q9NY15 2570 aa8.39□□□□□ -1.07
LDLR-205ENST00000557933 TRAV10A0A0B4J240 114 aa8.39□□□□□ -1.07
LDLR-205ENST00000557933 Q8N9L7 120 aa8.39□□□□□ -1.07
LDLR-205ENST00000557933 COL6A5A8TX70 2615 aa8.39□□□□□ -1.07
LDLR-205ENST00000557933 NSD1Q96L73 2696 aaPredicted RBP8.39□□□□□ -1.07
LDLR-205ENST00000557933 HIGD2BQ4VC39 106 aa8.38□□□□□ -1.07
LDLR-205ENST00000557933 UBL5Q9BZL1 73 aa8.38□□□□□ -1.07
LDLR-205ENST00000557933 PRO0255Q9UI72 69 aa8.38□□□□□ -1.07
LDLR-205ENST00000557933 X6R8D5 127 aa8.38□□□□□ -1.07
LDLR-205ENST00000557933 TMEM256-PLSCR3K7ERE1 68 aa8.37□□□□□ -1.07
LDLR-205ENST00000557933 KRTAP10-3P60369 221 aa8.37□□□□□ -1.07
LDLR-205ENST00000557933 SPAG11BQ08648 103 aa8.37□□□□□ -1.07
LDLR-205ENST00000557933 CYSRT1A8MQ03 144 aa8.37□□□□□ -1.07
LDLR-205ENST00000557933 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.37□□□□□ -1.07
LDLR-205ENST00000557933 RBM3P98179 157 aaKnown RBP8.36□□□□□ -1.07
LDLR-205ENST00000557933 INAFM1C9JVW0 142 aa8.36□□□□□ -1.07
LDLR-205ENST00000557933 CD164L2Q6UWJ8 174 aa8.36□□□□□ -1.07
LDLR-205ENST00000557933 TRBV10-3A0A0K0K1G6 114 aa8.35□□□□□ -1.07
LDLR-205ENST00000557933 JMJD7-PLA2G4BH0Y9G9 81 aa8.35□□□□□ -1.07
LDLR-205ENST00000557933 LINC00575Q6W349 94 aa8.34□□□□□ -1.07
LDLR-205ENST00000557933 RMI2Q96E14 147 aa8.34□□□□□ -1.07
LDLR-205ENST00000557933 ANK2Q01484 3957 aa8.34□□□□□ -1.07
LDLR-205ENST00000557933 DAD1P61803 113 aa8.33□□□□□ -1.08
LDLR-205ENST00000557933 IGHV4-28A0A0C4DH34 117 aa8.33□□□□□ -1.08
LDLR-205ENST00000557933 A0A1B0GUV1 79 aa8.33□□□□□ -1.08
LDLR-205ENST00000557933 LINC01547P58512 204 aaPredicted RBP8.33□□□□□ -1.08
LDLR-205ENST00000557933 TMEM258P61165 79 aa8.33□□□□□ -1.08
LDLR-205ENST00000557933 Q6ZQT0 140 aa8.33□□□□□ -1.08
LDLR-205ENST00000557933 Q6ZVQ6 151 aa8.32□□□□□ -1.08
LDLR-205ENST00000557933 SRRM2Q9UQ35 2752 aaKnown RBP8.31□□□□□ -1.08
LDLR-205ENST00000557933 DEFB105AQ8NG35 78 aa8.3□□□□□ -1.08
LDLR-205ENST00000557933 TM2D3Q9BRN9 247 aa8.3□□□□□ -1.08
LDLR-205ENST00000557933 LINC00167Q96N53 147 aa8.29□□□□□ -1.08
LDLR-205ENST00000557933 C6orf48Q9UBA6 75 aa8.28□□□□□ -1.08
LDLR-205ENST00000557933 C3orf84H3BNL1 204 aa8.27□□□□□ -1.09
LDLR-205ENST00000557933 C5orf47Q569G3 176 aa8.27□□□□□ -1.09
LDLR-205ENST00000557933 Q5XG85 94 aa8.27□□□□□ -1.09
LDLR-205ENST00000557933 ZNF561-AS1K7EIQ3 104 aa8.27□□□□□ -1.09
LDLR-205ENST00000557933 NDUFC2O95298 119 aa8.26□□□□□ -1.09
LDLR-205ENST00000557933 RETNQ9HD89 108 aa8.26□□□□□ -1.09
LDLR-205ENST00000557933 FAM236DA0A1B0GTK5 79 aa8.26□□□□□ -1.09
LDLR-205ENST00000557933 F8WEM9 126 aa8.26□□□□□ -1.09
LDLR-205ENST00000557933 FAM236CP0DP71 79 aa8.26□□□□□ -1.09
LDLR-205ENST00000557933 WFDC10BQ8IUB3 73 aa8.26□□□□□ -1.09
LDLR-205ENST00000557933 MUC7Q8TAX7 377 aa8.26□□□□□ -1.09
LDLR-205ENST00000557933 CMC4P56277 68 aaPredicted RBP8.25□□□□□ -1.09
LDLR-205ENST00000557933 H7BZZ5 65 aa8.24□□□□□ -1.09
LDLR-205ENST00000557933 BPY2O14599 106 aa8.24□□□□□ -1.09
LDLR-205ENST00000557933 LINC00612Q8N6U2 182 aa8.24□□□□□ -1.09
LDLR-205ENST00000557933 ZNF73O43830 326 aaPredicted RBP8.24□□□□□ -1.09
LDLR-205ENST00000557933 COX17Q14061 63 aa8.24□□□□□ -1.09
LDLR-205ENST00000557933 DIRC1Q969H9 104 aa8.24□□□□□ -1.09
LDLR-205ENST00000557933 IGLV6-57P01721 117 aa8.23□□□□□ -1.09
LDLR-205ENST00000557933 CAMK2N2Q96S95 79 aa8.23□□□□□ -1.09
LDLR-205ENST00000557933 LINC00474Q9P2X8 69 aa8.23□□□□□ -1.09
LDLR-205ENST00000557933 RPS28P62857 69 aaKnown RBP8.22□□□□□ -1.09
LDLR-205ENST00000557933 LYPD5Q6UWN5 251 aa8.22□□□□□ -1.09
LDLR-205ENST00000557933 COL7A1Q02388 2944 aa8.22□□□□□ -1.09
LDLR-205ENST00000557933 TENM2Q9NT68 2774 aa8.21□□□□□ -1.09
LDLR-205ENST00000557933 ATP5EP2Q5VTU8 51 aa8.21□□□□□ -1.1
LDLR-205ENST00000557933 Q6ZRU5 148 aa8.21□□□□□ -1.1
LDLR-205ENST00000557933 PRB2P02812 416 aaPredicted RBP8.2□□□□□ -1.1
LDLR-205ENST00000557933 COX7BP24311 80 aa8.2□□□□□ -1.1
LDLR-205ENST00000557933 Q8NAQ8 132 aa8.19□□□□□ -1.1
LDLR-205ENST00000557933 WIPF1O43516 503 aa8.19□□□□□ -1.1
LDLR-205ENST00000557933 TRAV7A0A075B6U4 112 aa8.18□□□□□ -1.1
LDLR-205ENST00000557933 A0A0G2JQZ4 141 aa8.18□□□□□ -1.1
LDLR-205ENST00000557933 A0A1W2PNN7 141 aa8.18□□□□□ -1.1
LDLR-205ENST00000557933 RPL37AP8A6NKH3 93 aa8.18□□□□□ -1.1
LDLR-205ENST00000557933 LYRM9A8MSI8 78 aa8.18□□□□□ -1.1
LDLR-205ENST00000557933 LOC110117498A0A087WWA1 95 aa8.17□□□□□ -1.1
LDLR-205ENST00000557933 LRCOL1A6NCL2 159 aa8.17□□□□□ -1.1
LDLR-205ENST00000557933 MPLKIPQ8TAP9 179 aa8.17□□□□□ -1.1
LDLR-205ENST00000557933 A0A0J9YWU9 116 aa8.16□□□□□ -1.1
LDLR-205ENST00000557933 IGHV4-30-4P0DP06 118 aa8.16□□□□□ -1.1
LDLR-205ENST00000557933 LELP1Q5T871 98 aa8.16□□□□□ -1.1
LDLR-205ENST00000557933 LINC00336Q6ZUF6 198 aa8.16□□□□□ -1.1
LDLR-205ENST00000557933 SPART-AS1P0CW21 52 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms