RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 LYRM7Q5U5X0 104 aa8.21□□□□□ -1.1
SHMT2-230ENST00000557427 SFTA2Q6UW10 78 aa8.21□□□□□ -1.1
SHMT2-230ENST00000557427 COPS9Q8WXC6 57 aa8.21□□□□□ -1.1
SHMT2-230ENST00000557427 LRCOL1A6NCL2 159 aa8.2□□□□□ -1.1
SHMT2-230ENST00000557427 PRSS2P07478 247 aa8.2□□□□□ -1.1
SHMT2-230ENST00000557427 Q6ZSA8 131 aa8.2□□□□□ -1.1
SHMT2-230ENST00000557427 KLK12Q9UKR0 248 aa8.2□□□□□ -1.1
SHMT2-230ENST00000557427 EIF4EBP3O60516 100 aaPredicted RBP8.19□□□□□ -1.1
SHMT2-230ENST00000557427 LECT2O14960 151 aa8.18□□□□□ -1.1
SHMT2-230ENST00000557427 ANGP03950 147 aaKnown RBP8.18□□□□□ -1.1
SHMT2-230ENST00000557427 REG3AQ06141 175 aa8.18□□□□□ -1.1
SHMT2-230ENST00000557427 MEIG1Q5JSS6 88 aa8.18□□□□□ -1.1
SHMT2-230ENST00000557427 CD164L2Q6UWJ8 174 aa8.18□□□□□ -1.1
SHMT2-230ENST00000557427 C5orf38Q86SI9 138 aa8.18□□□□□ -1.1
SHMT2-230ENST00000557427 LINC00269Q8N2A0 174 aa8.18□□□□□ -1.1
SHMT2-230ENST00000557427 NTN5Q8WTR8 489 aaPredicted RBP8.18□□□□□ -1.1
SHMT2-230ENST00000557427 UBE2WQ96B02 151 aa8.18□□□□□ -1.1
SHMT2-230ENST00000557427 KRTAP9-2Q9BYQ4 174 aa8.18□□□□□ -1.1
SHMT2-230ENST00000557427 ERG28Q9UKR5 140 aa8.18□□□□□ -1.1
SHMT2-230ENST00000557427 TNXBP22105 4242 aa8.17□□□□□ -1.1
SHMT2-230ENST00000557427 IGKV2D-24A0A075B6R9 120 aa8.17□□□□□ -1.1
SHMT2-230ENST00000557427 MT1HL1P0DM35 61 aa8.17□□□□□ -1.1
SHMT2-230ENST00000557427 XCL1P47992 114 aa8.17□□□□□ -1.1
SHMT2-230ENST00000557427 Q8N814 137 aa8.17□□□□□ -1.1
SHMT2-230ENST00000557427 LINC00308Q8TCZ7 52 aa8.17□□□□□ -1.1
SHMT2-230ENST00000557427 WFDC2Q14508 124 aa8.16□□□□□ -1.1
SHMT2-230ENST00000557427 CLPSL2Q6UWE3 100 aa8.16□□□□□ -1.1
SHMT2-230ENST00000557427 Q8IZM0 81 aa8.16□□□□□ -1.1
SHMT2-230ENST00000557427 CHCHD10Q8WYQ3 142 aaPredicted RBP8.16□□□□□ -1.1
SHMT2-230ENST00000557427 PRR34Q9NV39 138 aa8.16□□□□□ -1.1
SHMT2-230ENST00000557427 TOMM7Q9P0U1 55 aa8.16□□□□□ -1.1
SHMT2-230ENST00000557427 TRBV20-1A0A075B6N2 111 aa8.15□□□□□ -1.1
SHMT2-230ENST00000557427 RMI2Q96E14 147 aa8.15□□□□□ -1.1
SHMT2-230ENST00000557427 LOC107984156A0A0G2JMH3 177 aa8.14□□□□□ -1.11
SHMT2-230ENST00000557427 F8W1H4 67 aa8.14□□□□□ -1.11
SHMT2-230ENST00000557427 COX7A2LO14548 114 aa8.14□□□□□ -1.11
SHMT2-230ENST00000557427 NPC2P61916 151 aa8.14□□□□□ -1.11
SHMT2-230ENST00000557427 ARL17AQ8IVW1 177 aa8.14□□□□□ -1.11
SHMT2-230ENST00000557427 DAND5Q8N907 189 aa8.14□□□□□ -1.11
SHMT2-230ENST00000557427 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.13□□□□□ -1.11
SHMT2-230ENST00000557427 TRBV30A0A0K0K1B3 111 aa8.13□□□□□ -1.11
SHMT2-230ENST00000557427 CXCL5P42830 114 aa8.13□□□□□ -1.11
SHMT2-230ENST00000557427 FOXI1Q12951 378 aa8.13□□□□□ -1.11
SHMT2-230ENST00000557427 C6orf226Q5I0X4 101 aa8.13□□□□□ -1.11
SHMT2-230ENST00000557427 ENHOQ6UWT2 76 aa8.13□□□□□ -1.11
SHMT2-230ENST00000557427 SOSTDC1Q6X4U4 206 aa8.13□□□□□ -1.11
SHMT2-230ENST00000557427 SCXQ7RTU7 201 aa8.13□□□□□ -1.11
SHMT2-230ENST00000557427 H3BMG7 143 aa8.12□□□□□ -1.11
SHMT2-230ENST00000557427 CRPP02741 224 aa8.12□□□□□ -1.11
SHMT2-230ENST00000557427 TRAV8-4A0A0B4J246 113 aa8.11□□□□□ -1.11
SHMT2-230ENST00000557427 A0A0U1RRA0 63 aa8.11□□□□□ -1.11
SHMT2-230ENST00000557427 PSMB2P49721 201 aa8.11□□□□□ -1.11
SHMT2-230ENST00000557427 KIAA0087Q14695 138 aa8.11□□□□□ -1.11
SHMT2-230ENST00000557427 Q1RN00 199 aa8.11□□□□□ -1.11
SHMT2-230ENST00000557427 C1orf43Q9BWL3 253 aa8.11□□□□□ -1.11
SHMT2-230ENST00000557427 PRO0461Q9UI25 63 aa8.11□□□□□ -1.11
SHMT2-230ENST00000557427 IGLV10-54A0A075B6I4 117 aa8.1□□□□□ -1.11
SHMT2-230ENST00000557427 KRTAP9-6A0A140TA67 174 aa8.1□□□□□ -1.11
SHMT2-230ENST00000557427 TCL1BO95988 128 aa8.1□□□□□ -1.11
SHMT2-230ENST00000557427 SCGB1C2P0DMR2 95 aa8.1□□□□□ -1.11
SHMT2-230ENST00000557427 LINC00158P58513 81 aa8.1□□□□□ -1.11
SHMT2-230ENST00000557427 MIR7-3HGQ8N6C7 128 aa8.1□□□□□ -1.11
SHMT2-230ENST00000557427 GAGE12HA6NDE8 117 aa8.09□□□□□ -1.11
SHMT2-230ENST00000557427 H7C2G1 150 aa8.09□□□□□ -1.11
SHMT2-230ENST00000557427 MALP21145 153 aa8.09□□□□□ -1.11
SHMT2-230ENST00000557427 RPL13AP40429 203 aaKnown RBP8.09□□□□□ -1.11
SHMT2-230ENST00000557427 CKS1BP61024 79 aa8.09□□□□□ -1.11
SHMT2-230ENST00000557427 LINC01620Q4KN68 170 aa8.09□□□□□ -1.11
SHMT2-230ENST00000557427 OCIAD2Q56VL3 154 aa8.09□□□□□ -1.11
SHMT2-230ENST00000557427 CFAP161Q6P656 301 aa8.09□□□□□ -1.11
SHMT2-230ENST00000557427 TRIAP1O43715 76 aa8.08□□□□□ -1.12
SHMT2-230ENST00000557427 COX6CP09669 75 aa8.08□□□□□ -1.12
SHMT2-230ENST00000557427 COX17Q14061 63 aa8.08□□□□□ -1.12
SHMT2-230ENST00000557427 SND1-IT1Q9HBX3 110 aa8.07□□□□□ -1.12
SHMT2-230ENST00000557427 K7ERU9 68 aa8.06□□□□□ -1.12
SHMT2-230ENST00000557427 PFN2P35080 140 aa8.06□□□□□ -1.12
SHMT2-230ENST00000557427 ATXN8Q156A1 80 aa8.06□□□□□ -1.12
SHMT2-230ENST00000557427 TRAV13-2A0A0B4J235 113 aa8.05□□□□□ -1.12
SHMT2-230ENST00000557427 M0QXV9 152 aa8.05□□□□□ -1.12
SHMT2-230ENST00000557427 SPAG11BQ08648 103 aa8.05□□□□□ -1.12
SHMT2-230ENST00000557427 C2orf82Q6UX34 121 aa8.05□□□□□ -1.12
SHMT2-230ENST00000557427 CIRBP-AS1Q8TBR5 109 aa8.05□□□□□ -1.12
SHMT2-230ENST00000557427 USP17L23D6RBM5 183 aa8.04□□□□□ -1.12
SHMT2-230ENST00000557427 SMCPP49901 116 aaPredicted RBP8.04□□□□□ -1.12
SHMT2-230ENST00000557427 KRTAP26-1Q6PEX3 210 aa8.04□□□□□ -1.12
SHMT2-230ENST00000557427 LINC01600Q96MT4 127 aa8.04□□□□□ -1.12
SHMT2-230ENST00000557427 C14orf177Q52M58 125 aa8.03□□□□□ -1.12
SHMT2-230ENST00000557427 IGKV2-28A0A075B6P5 120 aa8.02□□□□□ -1.13
SHMT2-230ENST00000557427 GVQW2A0A096LPI5 108 aaPredicted RBP8.02□□□□□ -1.13
SHMT2-230ENST00000557427 IGKV2D-28P01615 120 aa8.02□□□□□ -1.13
SHMT2-230ENST00000557427 MTURNQ8N3F0 131 aa8.02□□□□□ -1.13
SHMT2-230ENST00000557427 LST1O00453 97 aa8.01□□□□□ -1.13
SHMT2-230ENST00000557427 RPL28P46779 137 aaKnown RBP8.01□□□□□ -1.13
SHMT2-230ENST00000557427 C9JAW5 83 aa8□□□□□ -1.13
SHMT2-230ENST00000557427 SLC25A20O43772 301 aa8□□□□□ -1.13
SHMT2-230ENST00000557427 NDUFC2O95298 119 aa8□□□□□ -1.13
SHMT2-230ENST00000557427 ETDBQ3ZM63 59 aa8□□□□□ -1.13
SHMT2-230ENST00000557427 LINC00337Q8N6G1 96 aa8□□□□□ -1.13
SHMT2-230ENST00000557427 TRBV10-2A0A0K0K1G8 114 aa7.99□□□□□ -1.13
SHMT2-230ENST00000557427 F8WDY8 70 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms