RNA–Protein interactions for RNA: ENST00000495515.1

HDAC6-235, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 569 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-235ENST00000495515 RPL24P83731 157 aaKnown RBP10.71□□□□□ -0.69
HDAC6-235ENST00000495515 LBHQ53QV2 105 aaPredicted RBP10.71□□□□□ -0.69
HDAC6-235ENST00000495515 MIR7-3HGQ8N6C7 128 aa10.71□□□□□ -0.69
HDAC6-235ENST00000495515 A0A0J9YXY3 114 aa10.7□□□□□ -0.7
HDAC6-235ENST00000495515 SERTAD4-AS1Q5TG53 156 aa10.7□□□□□ -0.7
HDAC6-235ENST00000495515 PHF5AQ7RTV0 110 aaKnown RBP10.7□□□□□ -0.7
HDAC6-235ENST00000495515 NKAPP1Q8N9T2 125 aa10.7□□□□□ -0.7
HDAC6-235ENST00000495515 TP73-AS1Q9UF72 201 aa10.7□□□□□ -0.7
HDAC6-235ENST00000495515 C22orf24Q9Y442 160 aa10.69□□□□□ -0.7
HDAC6-235ENST00000495515 UBE2BP63146 152 aa10.68□□□□□ -0.7
HDAC6-235ENST00000495515 KRTAP7-1Q8IUC3 87 aa10.68□□□□□ -0.7
HDAC6-235ENST00000495515 MIEN1Q9BRT3 115 aa10.68□□□□□ -0.7
HDAC6-235ENST00000495515 IGLV5-37A0A075B6J1 123 aa10.67□□□□□ -0.7
HDAC6-235ENST00000495515 TIMM17BO60830 172 aa10.67□□□□□ -0.7
HDAC6-235ENST00000495515 JOSD1Q15040 202 aaPredicted RBP10.67□□□□□ -0.7
HDAC6-235ENST00000495515 SCGB1D4Q6XE38 83 aa10.67□□□□□ -0.7
HDAC6-235ENST00000495515 MRPL55Q7Z7F7 128 aaKnown RBP10.67□□□□□ -0.7
HDAC6-235ENST00000495515 TTTY13Q9BZ97 58 aa10.66□□□□□ -0.7
HDAC6-235ENST00000495515 BOD1L2Q8IYS8 172 aa10.65□□□□□ -0.7
HDAC6-235ENST00000495515 DAND5Q8N907 189 aa10.65□□□□□ -0.7
HDAC6-235ENST00000495515 VPREB1P12018 145 aa10.64□□□□□ -0.71
HDAC6-235ENST00000495515 PCP2Q8IVA1 136 aa10.64□□□□□ -0.71
HDAC6-235ENST00000495515 LOC107984156A0A0G2JMH3 177 aa10.63□□□□□ -0.71
HDAC6-235ENST00000495515 TMEM238C9JI98 176 aa10.63□□□□□ -0.71
HDAC6-235ENST00000495515 PRR3P79522 188 aaKnown RBP10.63□□□□□ -0.71
HDAC6-235ENST00000495515 ARL17AQ8IVW1 177 aa10.63□□□□□ -0.71
HDAC6-235ENST00000495515 LINC00167Q96N53 147 aa10.62□□□□□ -0.71
HDAC6-235ENST00000495515 ADAMTSL4-AS1Q5T5F5 129 aa10.61□□□□□ -0.71
HDAC6-235ENST00000495515 VAMP8Q9BV40 100 aa10.61□□□□□ -0.71
HDAC6-235ENST00000495515 PSORS1C2Q9UIG4 136 aa10.61□□□□□ -0.71
HDAC6-235ENST00000495515 GAGE10A6NGK3 116 aa10.6□□□□□ -0.71
HDAC6-235ENST00000495515 INAFM2P0DMQ5 153 aa10.6□□□□□ -0.71
HDAC6-235ENST00000495515 KRTAP10-4P60372 401 aaPredicted RBP10.6□□□□□ -0.71
HDAC6-235ENST00000495515 COPS9Q8WXC6 57 aa10.6□□□□□ -0.71
HDAC6-235ENST00000495515 LITAFQ99732 161 aa10.6□□□□□ -0.71
HDAC6-235ENST00000495515 M0R378 163 aa10.59□□□□□ -0.71
HDAC6-235ENST00000495515 C1orf137Q5JT78 98 aa10.59□□□□□ -0.71
HDAC6-235ENST00000495515 FAT1Q14517 4588 aa10.58□□□□□ -0.72
HDAC6-235ENST00000495515 Q6ZVH6 145 aa10.58□□□□□ -0.72
HDAC6-235ENST00000495515 PAM16Q9Y3D7 125 aa10.58□□□□□ -0.72
HDAC6-235ENST00000495515 RPL37AP8A6NKH3 93 aa10.57□□□□□ -0.72
HDAC6-235ENST00000495515 NDUFC2O95298 119 aa10.57□□□□□ -0.72
HDAC6-235ENST00000495515 NPC2P61916 151 aa10.57□□□□□ -0.72
HDAC6-235ENST00000495515 SPATA45Q537H7 98 aa10.57□□□□□ -0.72
HDAC6-235ENST00000495515 PYY3Q5JQD4 70 aa10.57□□□□□ -0.72
HDAC6-235ENST00000495515 Q8NDZ9 215 aa10.57□□□□□ -0.72
HDAC6-235ENST00000495515 LINC00308Q8TCZ7 52 aa10.57□□□□□ -0.72
HDAC6-235ENST00000495515 SPANXDQ9BXN6 97 aa10.57□□□□□ -0.72
HDAC6-235ENST00000495515 SPANXCQ9NY87 97 aa10.57□□□□□ -0.72
HDAC6-235ENST00000495515 COX8AP10176 69 aa10.56□□□□□ -0.72
HDAC6-235ENST00000495515 KRTAP11-1Q8IUC1 163 aa10.56□□□□□ -0.72
HDAC6-235ENST00000495515 SPANXB1Q9NS25 103 aaPredicted RBP10.56□□□□□ -0.72
HDAC6-235ENST00000495515 TRBV10-2A0A0K0K1G8 114 aa10.55□□□□□ -0.72
HDAC6-235ENST00000495515 NCR3O14931 201 aa10.55□□□□□ -0.72
HDAC6-235ENST00000495515 IFITM1P13164 125 aa10.55□□□□□ -0.72
HDAC6-235ENST00000495515 SOSTDC1Q6X4U4 206 aa10.55□□□□□ -0.72
HDAC6-235ENST00000495515 IGLV1-50A0A075B6I6 118 aa10.54□□□□□ -0.72
HDAC6-235ENST00000495515 IGKV2-28A0A075B6P5 120 aa10.54□□□□□ -0.72
HDAC6-235ENST00000495515 DLEU1O43261 78 aa10.54□□□□□ -0.72
HDAC6-235ENST00000495515 IGKV2D-28P01615 120 aa10.54□□□□□ -0.72
HDAC6-235ENST00000495515 S100A12P80511 92 aa10.54□□□□□ -0.72
HDAC6-235ENST00000495515 IGLV7-43P04211 117 aa10.53□□□□□ -0.72
HDAC6-235ENST00000495515 PPDPFQ9H3Y8 114 aa10.53□□□□□ -0.72
HDAC6-235ENST00000495515 SRRM2Q9UQ35 2752 aaKnown RBP10.52□□□□□ -0.73
HDAC6-235ENST00000495515 SRSF9Q13242 221 aaKnown RBP eCLIP10.52□□□□□ -0.73
HDAC6-235ENST00000495515 EIF4EBP3O60516 100 aaPredicted RBP10.51□□□□□ -0.73
HDAC6-235ENST00000495515 BCE1O60756 84 aa10.51□□□□□ -0.73
HDAC6-235ENST00000495515 SPINK6Q6UWN8 80 aa10.51□□□□□ -0.73
HDAC6-235ENST00000495515 C14orf144Q96I85 54 aa10.51□□□□□ -0.73
HDAC6-235ENST00000495515 HNRNPA3P51991 378 aaKnown RBP10.5□□□□□ -0.73
HDAC6-235ENST00000495515 S100A7L2Q5SY68 101 aa10.5□□□□□ -0.73
HDAC6-235ENST00000495515 SLC25A34Q6PIV7 304 aa10.5□□□□□ -0.73
HDAC6-235ENST00000495515 REG3GQ6UW15 175 aa10.5□□□□□ -0.73
HDAC6-235ENST00000495515 LINC00518Q8N0U6 118 aa10.5□□□□□ -0.73
HDAC6-235ENST00000495515 DDTP30046 118 aa10.49□□□□□ -0.73
HDAC6-235ENST00000495515 CBY1Q9Y3M2 126 aa10.49□□□□□ -0.73
HDAC6-235ENST00000495515 VPS13BQ7Z7G8 4022 aa10.49□□□□□ -0.73
HDAC6-235ENST00000495515 TRBV10-3A0A0K0K1G6 114 aa10.48□□□□□ -0.73
HDAC6-235ENST00000495515 PRYO14603 147 aa10.48□□□□□ -0.73
HDAC6-235ENST00000495515 MUSTN1Q8IVN3 82 aa10.48□□□□□ -0.73
HDAC6-235ENST00000495515 TMEM126AQ9H061 195 aa10.48□□□□□ -0.73
HDAC6-235ENST00000495515 RPL28P46779 137 aaKnown RBP10.47□□□□□ -0.73
HDAC6-235ENST00000495515 DIRC1Q969H9 104 aa10.47□□□□□ -0.73
HDAC6-235ENST00000495515 KCNQ1DNQ9H478 68 aa10.47□□□□□ -0.73
HDAC6-235ENST00000495515 ZNF861PO60384 105 aa10.46□□□□□ -0.73
HDAC6-235ENST00000495515 UBE2AP49459 152 aa10.46□□□□□ -0.73
HDAC6-235ENST00000495515 IGLV6-57P01721 117 aa10.45□□□□□ -0.74
HDAC6-235ENST00000495515 OR13C6PQ8NH95 151 aa10.45□□□□□ -0.74
HDAC6-235ENST00000495515 HIST1H4GQ99525 98 aa10.45□□□□□ -0.74
HDAC6-235ENST00000495515 HIGD1BQ9P298 99 aa10.45□□□□□ -0.74
HDAC6-235ENST00000495515 FAM19A1Q7Z5A9 133 aa10.44□□□□□ -0.74
HDAC6-235ENST00000495515 TRAV23DV6A0A075B6W5 121 aa10.41□□□□□ -0.74
HDAC6-235ENST00000495515 ETDCA0A1B0GVM5 59 aa10.41□□□□□ -0.74
HDAC6-235ENST00000495515 H0Y9J4 135 aa10.41□□□□□ -0.74
HDAC6-235ENST00000495515 SMIM6P0DI80 62 aa10.41□□□□□ -0.74
HDAC6-235ENST00000495515 SPRR1AP35321 89 aa10.41□□□□□ -0.74
HDAC6-235ENST00000495515 LINC00337Q8N6G1 96 aa10.41□□□□□ -0.74
HDAC6-235ENST00000495515 FLG2Q5D862 2391 aaPredicted RBP10.4□□□□□ -0.74
HDAC6-235ENST00000495515 TRAV13-2A0A0B4J235 113 aa10.39□□□□□ -0.75
HDAC6-235ENST00000495515 OXTP01178 125 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms