RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 Q6ZSA8 131 aa10.91□□□□□ -0.66
LIME1-208ENST00000493265 A0A087WYN8 130 aa10.9□□□□□ -0.66
LIME1-208ENST00000493265 EPM2AB3EWF7 344 aa10.9□□□□□ -0.66
LIME1-208ENST00000493265 SMIM6P0DI80 62 aa10.9□□□□□ -0.66
LIME1-208ENST00000493265 SCXQ7RTU7 201 aa10.9□□□□□ -0.66
LIME1-208ENST00000493265 FAM19A5Q7Z5A7 132 aaPredicted RBP10.9□□□□□ -0.66
LIME1-208ENST00000493265 A0A1W2PNN7 141 aa10.89□□□□□ -0.67
LIME1-208ENST00000493265 BOD1L2Q8IYS8 172 aa10.89□□□□□ -0.67
LIME1-208ENST00000493265 CIRBP-AS1Q8TBR5 109 aa10.89□□□□□ -0.67
LIME1-208ENST00000493265 DMBT1Q9UGM3 2413 aaPredicted RBP10.89□□□□□ -0.67
LIME1-208ENST00000493265 FAT1Q14517 4588 aa10.88□□□□□ -0.67
LIME1-208ENST00000493265 TIMM17BO60830 172 aa10.87□□□□□ -0.67
LIME1-208ENST00000493265 SLC25A34Q6PIV7 304 aa10.87□□□□□ -0.67
LIME1-208ENST00000493265 LITAFQ99732 161 aa10.87□□□□□ -0.67
LIME1-208ENST00000493265 TMEM238C9JI98 176 aa10.86□□□□□ -0.67
LIME1-208ENST00000493265 INAFM2P0DMQ5 153 aa10.86□□□□□ -0.67
LIME1-208ENST00000493265 XGP55808 180 aa10.86□□□□□ -0.67
LIME1-208ENST00000493265 SERTAD4-AS1Q5TG53 156 aa10.86□□□□□ -0.67
LIME1-208ENST00000493265 MIEN1Q9BRT3 115 aa10.85□□□□□ -0.67
LIME1-208ENST00000493265 DLEU1O43261 78 aa10.84□□□□□ -0.67
LIME1-208ENST00000493265 PLAC8Q9NZF1 115 aa10.84□□□□□ -0.67
LIME1-208ENST00000493265 KRTAP7-1Q8IUC3 87 aa10.83□□□□□ -0.68
LIME1-208ENST00000493265 C12orf57Q99622 126 aa10.83□□□□□ -0.68
LIME1-208ENST00000493265 PRO1933Q9H354 126 aa10.83□□□□□ -0.68
LIME1-208ENST00000493265 M0QXV9 152 aa10.82□□□□□ -0.68
LIME1-208ENST00000493265 EIF4EBP3O60516 100 aaPredicted RBP10.82□□□□□ -0.68
LIME1-208ENST00000493265 SMR3BP02814 79 aaPredicted RBP10.82□□□□□ -0.68
LIME1-208ENST00000493265 SRSF9Q13242 221 aaKnown RBP eCLIP10.82□□□□□ -0.68
LIME1-208ENST00000493265 Q5VSD8 79 aa10.82□□□□□ -0.68
LIME1-208ENST00000493265 SOSTDC1Q6X4U4 206 aa10.82□□□□□ -0.68
LIME1-208ENST00000493265 Q8NDZ9 215 aa10.82□□□□□ -0.68
LIME1-208ENST00000493265 LINC00308Q8TCZ7 52 aa10.82□□□□□ -0.68
LIME1-208ENST00000493265 DNAH8Q96JB1 4490 aa10.82□□□□□ -0.68
LIME1-208ENST00000493265 VPS13BQ7Z7G8 4022 aa10.81□□□□□ -0.68
LIME1-208ENST00000493265 PHF5AQ7RTV0 110 aaKnown RBP10.81□□□□□ -0.68
LIME1-208ENST00000493265 NKAPP1Q8N9T2 125 aa10.81□□□□□ -0.68
LIME1-208ENST00000493265 SPANXDQ9BXN6 97 aa10.81□□□□□ -0.68
LIME1-208ENST00000493265 SPANXCQ9NY87 97 aa10.81□□□□□ -0.68
LIME1-208ENST00000493265 MYCBP2O75592 4640 aa10.8□□□□□ -0.68
LIME1-208ENST00000493265 PRR3P79522 188 aaKnown RBP10.8□□□□□ -0.68
LIME1-208ENST00000493265 RPL24P83731 157 aaKnown RBP10.8□□□□□ -0.68
LIME1-208ENST00000493265 C22orf24Q9Y442 160 aa10.8□□□□□ -0.68
LIME1-208ENST00000493265 GAGE10A6NGK3 116 aa10.79□□□□□ -0.68
LIME1-208ENST00000493265 NCR3O14931 201 aa10.79□□□□□ -0.68
LIME1-208ENST00000493265 VPREB1P12018 145 aa10.79□□□□□ -0.68
LIME1-208ENST00000493265 MUSTN1Q8IVN3 82 aa10.79□□□□□ -0.68
LIME1-208ENST00000493265 HIST1H4GQ99525 98 aa10.79□□□□□ -0.68
LIME1-208ENST00000493265 PLA2G2DQ9UNK4 145 aa10.79□□□□□ -0.68
LIME1-208ENST00000493265 C2orf91Q6ZV80 131 aa10.78□□□□□ -0.68
LIME1-208ENST00000493265 SPANXB1Q9NS25 103 aaPredicted RBP10.78□□□□□ -0.68
LIME1-208ENST00000493265 UQCR10Q9UDW1 63 aa10.78□□□□□ -0.68
LIME1-208ENST00000493265 FLG2Q5D862 2391 aaPredicted RBP10.76□□□□□ -0.69
LIME1-208ENST00000493265 LOC107984156A0A0G2JMH3 177 aa10.76□□□□□ -0.69
LIME1-208ENST00000493265 IFITM1P13164 125 aa10.76□□□□□ -0.69
LIME1-208ENST00000493265 UBE2BP63146 152 aa10.76□□□□□ -0.69
LIME1-208ENST00000493265 Q6ZVH6 145 aa10.76□□□□□ -0.69
LIME1-208ENST00000493265 ARL17AQ8IVW1 177 aa10.76□□□□□ -0.69
LIME1-208ENST00000493265 HIGD1BQ9P298 99 aa10.76□□□□□ -0.69
LIME1-208ENST00000493265 MRPL55Q7Z7F7 128 aaKnown RBP10.75□□□□□ -0.69
LIME1-208ENST00000493265 LINC00518Q8N0U6 118 aa10.75□□□□□ -0.69
LIME1-208ENST00000493265 C7orf33Q8WU49 177 aa10.75□□□□□ -0.69
LIME1-208ENST00000493265 COPS9Q8WXC6 57 aa10.75□□□□□ -0.69
LIME1-208ENST00000493265 IGLV5-37A0A075B6J1 123 aa10.74□□□□□ -0.69
LIME1-208ENST00000493265 RPL37AP8A6NKH3 93 aa10.74□□□□□ -0.69
LIME1-208ENST00000493265 LBHQ53QV2 105 aaPredicted RBP10.74□□□□□ -0.69
LIME1-208ENST00000493265 LINC00528Q8N1L1 170 aa10.74□□□□□ -0.69
LIME1-208ENST00000493265 LINC00167Q96N53 147 aa10.74□□□□□ -0.69
LIME1-208ENST00000493265 M0R378 163 aa10.72□□□□□ -0.69
LIME1-208ENST00000493265 HNRNPA3P51991 378 aaKnown RBP10.72□□□□□ -0.69
LIME1-208ENST00000493265 SRRM2Q9UQ35 2752 aaKnown RBP10.72□□□□□ -0.69
LIME1-208ENST00000493265 IGKV2-28A0A075B6P5 120 aa10.71□□□□□ -0.69
LIME1-208ENST00000493265 NDUFC2O95298 119 aa10.71□□□□□ -0.69
LIME1-208ENST00000493265 IGKV2D-28P01615 120 aa10.71□□□□□ -0.69
LIME1-208ENST00000493265 KRTAP11-1Q8IUC1 163 aa10.71□□□□□ -0.69
LIME1-208ENST00000493265 TSTD3H0UI37 97 aa10.7□□□□□ -0.7
LIME1-208ENST00000493265 FAM229AH3BQW9 127 aa10.7□□□□□ -0.7
LIME1-208ENST00000493265 S100A7L2Q5SY68 101 aa10.69□□□□□ -0.7
LIME1-208ENST00000493265 OR13C6PQ8NH95 151 aa10.69□□□□□ -0.7
LIME1-208ENST00000493265 A4D1N5 150 aa10.68□□□□□ -0.7
LIME1-208ENST00000493265 TRBV10-3A0A0K0K1G6 114 aa10.67□□□□□ -0.7
LIME1-208ENST00000493265 TRBV10-2A0A0K0K1G8 114 aa10.67□□□□□ -0.7
LIME1-208ENST00000493265 RPL37AP61513 92 aaKnown RBP10.67□□□□□ -0.7
LIME1-208ENST00000493265 IGLV1-50A0A075B6I6 118 aa10.66□□□□□ -0.7
LIME1-208ENST00000493265 DDTP30046 118 aa10.66□□□□□ -0.7
LIME1-208ENST00000493265 HSD52Q0P140 79 aa10.66□□□□□ -0.7
LIME1-208ENST00000493265 TAL2Q16559 108 aa10.66□□□□□ -0.7
LIME1-208ENST00000493265 CEND1Q8N111 149 aa10.66□□□□□ -0.7
LIME1-208ENST00000493265 PPDPFQ9H3Y8 114 aa10.66□□□□□ -0.7
LIME1-208ENST00000493265 PSORS1C2Q9UIG4 136 aa10.66□□□□□ -0.7
LIME1-208ENST00000493265 A6NDN8 102 aa10.65□□□□□ -0.7
LIME1-208ENST00000493265 LINC00337Q8N6G1 96 aa10.65□□□□□ -0.7
LIME1-208ENST00000493265 C1orf137Q5JT78 98 aa10.64□□□□□ -0.71
LIME1-208ENST00000493265 J3QL48 77 aa10.63□□□□□ -0.71
LIME1-208ENST00000493265 CTAG1AP78358 180 aa10.63□□□□□ -0.71
LIME1-208ENST00000493265 FXYD2P54710 66 aa10.62□□□□□ -0.71
LIME1-208ENST00000493265 IGLV6-57P01721 117 aa10.61□□□□□ -0.71
LIME1-208ENST00000493265 PLA2G1BP04054 148 aaKnown RBP10.61□□□□□ -0.71
LIME1-208ENST00000493265 REG3GQ6UW15 175 aa10.6□□□□□ -0.71
LIME1-208ENST00000493265 TMEM126AQ9H061 195 aa10.6□□□□□ -0.71
LIME1-208ENST00000493265 TRAV13-2A0A0B4J235 113 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms