RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	KRTAP1-4	P0C5Y4	121 aa		5.21	□□□□□ -1.58
RFX3-209	ENST00000451859	LINC00614	P0C842	121 aa		5.21	□□□□□ -1.58
RFX3-209	ENST00000451859	IGLC3	P0DOY3	106 aa		5.21	□□□□□ -1.58
RFX3-209	ENST00000451859	ZNF22	P17026	224 aa	Predicted RBP	5.21	□□□□□ -1.58
RFX3-209	ENST00000451859	NKAPP1	Q8N9T2	125 aa		5.21	□□□□□ -1.58
RFX3-209	ENST00000451859	ZNF861P	O60384	105 aa		5.2	□□□□□ -1.58
RFX3-209	ENST00000451859	BAGE3	Q86Y29	109 aa		5.2	□□□□□ -1.58
RFX3-209	ENST00000451859	SVBP	Q8N300	66 aa		5.2	□□□□□ -1.58
RFX3-209	ENST00000451859	ZNF625	Q96I27	306 aa	Predicted RBP	5.2	□□□□□ -1.58
RFX3-209	ENST00000451859	LINC00167	Q96N53	147 aa		5.2	□□□□□ -1.58
RFX3-209	ENST00000451859	IGLV1-50	A0A075B6I6	118 aa		5.19	□□□□□ -1.58
RFX3-209	ENST00000451859	C11orf86	A6NJI1	115 aa		5.19	□□□□□ -1.58
RFX3-209	ENST00000451859	BCE1	O60756	84 aa		5.19	□□□□□ -1.58
RFX3-209	ENST00000451859	TMEM170B	Q5T4T1	132 aa		5.19	□□□□□ -1.58
RFX3-209	ENST00000451859	TP73-AS1	Q9UF72	201 aa		5.19	□□□□□ -1.58
RFX3-209	ENST00000451859	IGKV2-28	A0A075B6P5	120 aa		5.18	□□□□□ -1.58
RFX3-209	ENST00000451859	IGLV5-39	A0A0G2JS06	123 aa		5.18	□□□□□ -1.58
RFX3-209	ENST00000451859	IGKV2D-28	P01615	120 aa		5.18	□□□□□ -1.58
RFX3-209	ENST00000451859	RPL28	P46779	137 aa	Known RBP	5.18	□□□□□ -1.58
RFX3-209	ENST00000451859	RPL13A	P40429	203 aa	Known RBP	5.17	□□□□□ -1.58
RFX3-209	ENST00000451859	UBE2A	P49459	152 aa		5.17	□□□□□ -1.58
RFX3-209	ENST00000451859	SND1-IT1	Q9HBX3	110 aa		5.17	□□□□□ -1.58
RFX3-209	ENST00000451859	ERG28	Q9UKR5	140 aa		5.17	□□□□□ -1.58
RFX3-209	ENST00000451859	CHTOP	Q9Y3Y2	248 aa	Known RBP	5.17	□□□□□ -1.58
RFX3-209	ENST00000451859	IGLV5-37	A0A075B6J1	123 aa		5.16	□□□□□ -1.58
RFX3-209	ENST00000451859		A0A0U1RRA0	63 aa		5.16	□□□□□ -1.58
RFX3-209	ENST00000451859	CBLN2	Q8IUK8	224 aa		5.16	□□□□□ -1.58
RFX3-209	ENST00000451859	ANAPC11	Q9NYG5	84 aa		5.16	□□□□□ -1.58
RFX3-209	ENST00000451859		A0A087X002	238 aa		5.15	□□□□□ -1.59
RFX3-209	ENST00000451859		H0Y8G0	127 aa		5.15	□□□□□ -1.59
RFX3-209	ENST00000451859	TSPAN13	O95857	204 aa		5.15	□□□□□ -1.59
RFX3-209	ENST00000451859	PRLH	P81277	87 aa		5.15	□□□□□ -1.59
RFX3-209	ENST00000451859	PRR4	Q16378	134 aa		5.15	□□□□□ -1.59
RFX3-209	ENST00000451859	IFI27L1	Q96BM0	104 aa		5.15	□□□□□ -1.59
RFX3-209	ENST00000451859	TMEM238	C9JI98	176 aa		5.14	□□□□□ -1.59
RFX3-209	ENST00000451859	HSBP1	O75506	76 aa		5.14	□□□□□ -1.59
RFX3-209	ENST00000451859	VPREB1	P12018	145 aa		5.14	□□□□□ -1.59
RFX3-209	ENST00000451859	LINC00158	P58513	81 aa		5.14	□□□□□ -1.59
RFX3-209	ENST00000451859	FAM19A1	Q7Z5A9	133 aa		5.14	□□□□□ -1.59
RFX3-209	ENST00000451859	FAM19A2	Q8N3H0	131 aa		5.14	□□□□□ -1.59
RFX3-209	ENST00000451859		Q8NDZ9	215 aa		5.14	□□□□□ -1.59
RFX3-209	ENST00000451859	CHCHD1	Q96BP2	118 aa	Known RBP	5.14	□□□□□ -1.59
RFX3-209	ENST00000451859	YPEL4	Q96NS1	127 aa		5.14	□□□□□ -1.59
RFX3-209	ENST00000451859	CRYGA	P11844	174 aa		5.13	□□□□□ -1.59
RFX3-209	ENST00000451859	RPL24	P83731	157 aa	Known RBP	5.13	□□□□□ -1.59
RFX3-209	ENST00000451859	TYMSOS	Q8TAI1	123 aa		5.13	□□□□□ -1.59
RFX3-209	ENST00000451859	TMEM126A	Q9H061	195 aa		5.13	□□□□□ -1.59
RFX3-209	ENST00000451859	TMEM223	A0PJW6	202 aa		5.12	□□□□□ -1.59
RFX3-209	ENST00000451859	COX17	Q14061	63 aa		5.12	□□□□□ -1.59
RFX3-209	ENST00000451859	MEIG1	Q5JSS6	88 aa		5.12	□□□□□ -1.59
RFX3-209	ENST00000451859	SFTA2	Q6UW10	78 aa		5.12	□□□□□ -1.59
RFX3-209	ENST00000451859	KRTAP13-1	Q8IUC0	172 aa		5.12	□□□□□ -1.59
RFX3-209	ENST00000451859	TRAV12-1	A0A0B4J245	112 aa		5.11	□□□□□ -1.59
RFX3-209	ENST00000451859	ATP6V1G1	O75348	118 aa		5.11	□□□□□ -1.59
RFX3-209	ENST00000451859	TRGC2	P03986	189 aa		5.11	□□□□□ -1.59
RFX3-209	ENST00000451859	SMIM13	P0DJ93	91 aa		5.11	□□□□□ -1.59
RFX3-209	ENST00000451859		M0R378	163 aa		5.1	□□□□□ -1.59
RFX3-209	ENST00000451859	NCR3	O14931	201 aa		5.1	□□□□□ -1.59
RFX3-209	ENST00000451859	HIGD2A	Q9BW72	106 aa		5.1	□□□□□ -1.59
RFX3-209	ENST00000451859	SERF1A	O75920	110 aa		5.09	□□□□□ -1.59
RFX3-209	ENST00000451859	KRTAP13-2	Q52LG2	175 aa		5.09	□□□□□ -1.59
RFX3-209	ENST00000451859	BOD1L2	Q8IYS8	172 aa		5.09	□□□□□ -1.59
RFX3-209	ENST00000451859	SLC7A5P1	Q8MH63	180 aa		5.09	□□□□□ -1.59
RFX3-209	ENST00000451859	MIR7-3HG	Q8N6C7	128 aa		5.09	□□□□□ -1.59
RFX3-209	ENST00000451859	IGKV2D-26	A0A0A0MRZ7	120 aa		5.08	□□□□□ -1.6
RFX3-209	ENST00000451859	LEPROTL1	O95214	131 aa		5.08	□□□□□ -1.6
RFX3-209	ENST00000451859	FABP4	P15090	132 aa		5.08	□□□□□ -1.6
RFX3-209	ENST00000451859	RETNLB	Q9BQ08	111 aa		5.08	□□□□□ -1.6
RFX3-209	ENST00000451859	PMCHL2	Q9BQD1	86 aa		5.08	□□□□□ -1.6
RFX3-209	ENST00000451859	NDUFA12	Q9UI09	145 aa		5.08	□□□□□ -1.6
RFX3-209	ENST00000451859	TSPEAR-AS2	P59090	65 aa		5.07	□□□□□ -1.6
RFX3-209	ENST00000451859	FAM229B	Q4G0N7	80 aa		5.07	□□□□□ -1.6
RFX3-209	ENST00000451859	DAND5	Q8N907	189 aa		5.07	□□□□□ -1.6
RFX3-209	ENST00000451859	LINC00304	Q8N9R0	145 aa		5.07	□□□□□ -1.6
RFX3-209	ENST00000451859	MYMX	A0A1B0GTQ4	84 aa		5.06	□□□□□ -1.6
RFX3-209	ENST00000451859	HERV-K104	P63124	156 aa		5.06	□□□□□ -1.6
RFX3-209	ENST00000451859	C3orf22	Q8N5N4	141 aa		5.06	□□□□□ -1.6
RFX3-209	ENST00000451859	PRY	O14603	147 aa		5.05	□□□□□ -1.6
RFX3-209	ENST00000451859	HERVK_113	P61574	105 aa		5.05	□□□□□ -1.6
RFX3-209	ENST00000451859	PLEKHB2	Q96CS7	222 aa		5.05	□□□□□ -1.6
RFX3-209	ENST00000451859	MAP1LC3C	Q9BXW4	147 aa		5.05	□□□□□ -1.6
RFX3-209	ENST00000451859	HSPB8	Q9UJY1	196 aa		5.05	□□□□□ -1.6
RFX3-209	ENST00000451859	TRBV10-3	A0A0K0K1G6	114 aa		5.04	□□□□□ -1.6
RFX3-209	ENST00000451859	ETDC	A0A1B0GVM5	59 aa		5.04	□□□□□ -1.6
RFX3-209	ENST00000451859		J3QQQ9	107 aa		5.04	□□□□□ -1.6
RFX3-209	ENST00000451859	LEPROT	O15243	131 aa		5.04	□□□□□ -1.6
RFX3-209	ENST00000451859	DPM2	O94777	84 aa		5.04	□□□□□ -1.6
RFX3-209	ENST00000451859	PLN	P26678	52 aa		5.04	□□□□□ -1.6
RFX3-209	ENST00000451859	C9orf118	A6NHY6	69 aa		5.03	□□□□□ -1.6
RFX3-209	ENST00000451859	COLCA2	A8K830	154 aa		5.03	□□□□□ -1.6
RFX3-209	ENST00000451859	LINC00587	B1AMM8	73 aa		5.03	□□□□□ -1.6
RFX3-209	ENST00000451859	IGKC	P01834	107 aa		5.03	□□□□□ -1.6
RFX3-209	ENST00000451859	LGALS3	P17931	250 aa	Known RBP	5.03	□□□□□ -1.6
RFX3-209	ENST00000451859	NPC2	P61916	151 aa		5.03	□□□□□ -1.6
RFX3-209	ENST00000451859	SPRR4	Q96PI1	79 aa		5.03	□□□□□ -1.6
RFX3-209	ENST00000451859	PPDPF	Q9H3Y8	114 aa		5.03	□□□□□ -1.6
RFX3-209	ENST00000451859	SMCR5	Q8TEV8	140 aa		5.02	□□□□□ -1.61
RFX3-209	ENST00000451859	MIEN1	Q9BRT3	115 aa		5.02	□□□□□ -1.61
RFX3-209	ENST00000451859	DDT	P30046	118 aa		5.01	□□□□□ -1.61
RFX3-209	ENST00000451859	S100A12	P80511	92 aa		5.01	□□□□□ -1.61

Retrieved 100 of 20,778 RNA–protein pairs in 139.7 ms