RNA–Protein interactions for RNA: ENST00000447216.2

TRAPPC4-203, Transcript of trafficking protein particle complex 4, humanhuman

TSL 2

Gene TRAPPC4, Length 980 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-203ENST00000447216 NPC2P61916 151 aa11.39□□□□□ -0.59
TRAPPC4-203ENST00000447216 SLC25A34Q6PIV7 304 aa11.38□□□□□ -0.59
TRAPPC4-203ENST00000447216 SCXQ7RTU7 201 aa11.38□□□□□ -0.59
TRAPPC4-203ENST00000447216 FAM19A5Q7Z5A7 132 aaPredicted RBP11.38□□□□□ -0.59
TRAPPC4-203ENST00000447216 DLEU1O43261 78 aa11.37□□□□□ -0.59
TRAPPC4-203ENST00000447216 XGP55808 180 aa11.37□□□□□ -0.59
TRAPPC4-203ENST00000447216 SERTAD4-AS1Q5TG53 156 aa11.37□□□□□ -0.59
TRAPPC4-203ENST00000447216 KRTAP7-1Q8IUC3 87 aa11.37□□□□□ -0.59
TRAPPC4-203ENST00000447216 CIRBP-AS1Q8TBR5 109 aa11.37□□□□□ -0.59
TRAPPC4-203ENST00000447216 BIRC6Q9NR09 4857 aa11.36□□□□□ -0.59
TRAPPC4-203ENST00000447216 TMEM238C9JI98 176 aa11.36□□□□□ -0.59
TRAPPC4-203ENST00000447216 EIF4EBP3O60516 100 aaPredicted RBP11.36□□□□□ -0.59
TRAPPC4-203ENST00000447216 SOSTDC1Q6X4U4 206 aa11.36□□□□□ -0.59
TRAPPC4-203ENST00000447216 Q8NDZ9 215 aa11.36□□□□□ -0.59
TRAPPC4-203ENST00000447216 PRO1933Q9H354 126 aa11.36□□□□□ -0.59
TRAPPC4-203ENST00000447216 C12orf57Q99622 126 aa11.35□□□□□ -0.59
TRAPPC4-203ENST00000447216 PLAC8Q9NZF1 115 aa11.35□□□□□ -0.59
TRAPPC4-203ENST00000447216 SPANXDQ9BXN6 97 aa11.34□□□□□ -0.59
TRAPPC4-203ENST00000447216 SPANXCQ9NY87 97 aa11.34□□□□□ -0.59
TRAPPC4-203ENST00000447216 C2orf91Q6ZV80 131 aa11.33□□□□□ -0.6
TRAPPC4-203ENST00000447216 LINC00308Q8TCZ7 52 aa11.33□□□□□ -0.6
TRAPPC4-203ENST00000447216 RYR1P21817 5038 aa11.33□□□□□ -0.6
TRAPPC4-203ENST00000447216 MIEN1Q9BRT3 115 aa11.32□□□□□ -0.6
TRAPPC4-203ENST00000447216 VPREB1P12018 145 aa11.31□□□□□ -0.6
TRAPPC4-203ENST00000447216 PHF5AQ7RTV0 110 aaKnown RBP11.31□□□□□ -0.6
TRAPPC4-203ENST00000447216 SPANXB1Q9NS25 103 aaPredicted RBP11.31□□□□□ -0.6
TRAPPC4-203ENST00000447216 PLA2G2DQ9UNK4 145 aa11.31□□□□□ -0.6
TRAPPC4-203ENST00000447216 KIAA1109Q2LD37 5005 aa11.3□□□□□ -0.6
TRAPPC4-203ENST00000447216 LOC107984156A0A0G2JMH3 177 aa11.3□□□□□ -0.6
TRAPPC4-203ENST00000447216 EPM2AB3EWF7 344 aa11.3□□□□□ -0.6
TRAPPC4-203ENST00000447216 M0QXV9 152 aa11.3□□□□□ -0.6
TRAPPC4-203ENST00000447216 SRSF9Q13242 221 aaKnown RBP eCLIP11.3□□□□□ -0.6
TRAPPC4-203ENST00000447216 ARL17AQ8IVW1 177 aa11.3□□□□□ -0.6
TRAPPC4-203ENST00000447216 LINC00518Q8N0U6 118 aa11.3□□□□□ -0.6
TRAPPC4-203ENST00000447216 UQCR10Q9UDW1 63 aa11.3□□□□□ -0.6
TRAPPC4-203ENST00000447216 CDK2AP2O75956 126 aa11.29□□□□□ -0.6
TRAPPC4-203ENST00000447216 PRR3P79522 188 aaKnown RBP11.29□□□□□ -0.6
TRAPPC4-203ENST00000447216 MUSTN1Q8IVN3 82 aa11.29□□□□□ -0.6
TRAPPC4-203ENST00000447216 HIGD1BQ9P298 99 aa11.29□□□□□ -0.6
TRAPPC4-203ENST00000447216 C22orf24Q9Y442 160 aa11.29□□□□□ -0.6
TRAPPC4-203ENST00000447216 HSPG2P98160 4391 aa11.29□□□□□ -0.6
TRAPPC4-203ENST00000447216 RPL24P83731 157 aaKnown RBP11.28□□□□□ -0.6
TRAPPC4-203ENST00000447216 NKAPP1Q8N9T2 125 aa11.28□□□□□ -0.6
TRAPPC4-203ENST00000447216 IGLV5-37A0A075B6J1 123 aa11.27□□□□□ -0.61
TRAPPC4-203ENST00000447216 NCR3O14931 201 aa11.27□□□□□ -0.61
TRAPPC4-203ENST00000447216 SMR3BP02814 79 aaPredicted RBP11.27□□□□□ -0.61
TRAPPC4-203ENST00000447216 IFITM1P13164 125 aa11.27□□□□□ -0.61
TRAPPC4-203ENST00000447216 Q6ZVH6 145 aa11.27□□□□□ -0.61
TRAPPC4-203ENST00000447216 HIST1H4GQ99525 98 aa11.27□□□□□ -0.61
TRAPPC4-203ENST00000447216 GAGE10A6NGK3 116 aa11.26□□□□□ -0.61
TRAPPC4-203ENST00000447216 MRPL55Q7Z7F7 128 aaKnown RBP11.24□□□□□ -0.61
TRAPPC4-203ENST00000447216 C7orf33Q8WU49 177 aa11.24□□□□□ -0.61
TRAPPC4-203ENST00000447216 LINC00167Q96N53 147 aa11.24□□□□□ -0.61
TRAPPC4-203ENST00000447216 HNRNPA3P51991 378 aaKnown RBP11.23□□□□□ -0.61
TRAPPC4-203ENST00000447216 KRTAP11-1Q8IUC1 163 aa11.23□□□□□ -0.61
TRAPPC4-203ENST00000447216 RPL37AP8A6NKH3 93 aa11.22□□□□□ -0.61
TRAPPC4-203ENST00000447216 J3QL48 77 aa11.22□□□□□ -0.61
TRAPPC4-203ENST00000447216 NDUFC2O95298 119 aa11.22□□□□□ -0.61
TRAPPC4-203ENST00000447216 COPS9Q8WXC6 57 aa11.22□□□□□ -0.61
TRAPPC4-203ENST00000447216 M0R378 163 aa11.21□□□□□ -0.61
TRAPPC4-203ENST00000447216 UBE2BP63146 152 aa11.21□□□□□ -0.61
TRAPPC4-203ENST00000447216 LBHQ53QV2 105 aaPredicted RBP11.21□□□□□ -0.61
TRAPPC4-203ENST00000447216 LINC00528Q8N1L1 170 aa11.2□□□□□ -0.62
TRAPPC4-203ENST00000447216 PPDPFQ9H3Y8 114 aa11.2□□□□□ -0.62
TRAPPC4-203ENST00000447216 FAT1Q14517 4588 aa11.19□□□□□ -0.62
TRAPPC4-203ENST00000447216 IGKV2-28A0A075B6P5 120 aa11.19□□□□□ -0.62
TRAPPC4-203ENST00000447216 A4D1N5 150 aa11.19□□□□□ -0.62
TRAPPC4-203ENST00000447216 TSTD3H0UI37 97 aa11.19□□□□□ -0.62
TRAPPC4-203ENST00000447216 IGKV2D-28P01615 120 aa11.19□□□□□ -0.62
TRAPPC4-203ENST00000447216 TAL2Q16559 108 aa11.18□□□□□ -0.62
TRAPPC4-203ENST00000447216 KRTAP17-1Q9BYP8 105 aa11.18□□□□□ -0.62
TRAPPC4-203ENST00000447216 TRBV10-2A0A0K0K1G8 114 aa11.17□□□□□ -0.62
TRAPPC4-203ENST00000447216 HSD52Q0P140 79 aa11.17□□□□□ -0.62
TRAPPC4-203ENST00000447216 CEND1Q8N111 149 aa11.17□□□□□ -0.62
TRAPPC4-203ENST00000447216 TRBV10-3A0A0K0K1G6 114 aa11.16□□□□□ -0.62
TRAPPC4-203ENST00000447216 LINC00337Q8N6G1 96 aa11.16□□□□□ -0.62
TRAPPC4-203ENST00000447216 VPS13BQ7Z7G8 4022 aa11.16□□□□□ -0.62
TRAPPC4-203ENST00000447216 IGLV1-50A0A075B6I6 118 aa11.15□□□□□ -0.62
TRAPPC4-203ENST00000447216 OR13C6PQ8NH95 151 aa11.15□□□□□ -0.62
TRAPPC4-203ENST00000447216 PSORS1C2Q9UIG4 136 aa11.15□□□□□ -0.62
TRAPPC4-203ENST00000447216 DDTP30046 118 aa11.14□□□□□ -0.63
TRAPPC4-203ENST00000447216 FXYD2P54710 66 aa11.14□□□□□ -0.63
TRAPPC4-203ENST00000447216 CTAG1AP78358 180 aa11.14□□□□□ -0.63
TRAPPC4-203ENST00000447216 S100A7L2Q5SY68 101 aa11.14□□□□□ -0.63
TRAPPC4-203ENST00000447216 RPL37AP61513 92 aaKnown RBP11.13□□□□□ -0.63
TRAPPC4-203ENST00000447216 IGLV6-57P01721 117 aa11.12□□□□□ -0.63
TRAPPC4-203ENST00000447216 A6NDN8 102 aa11.1□□□□□ -0.63
TRAPPC4-203ENST00000447216 FAM229AH3BQW9 127 aa11.1□□□□□ -0.63
TRAPPC4-203ENST00000447216 C1orf137Q5JT78 98 aa11.1□□□□□ -0.63
TRAPPC4-203ENST00000447216 Q5VSD8 79 aa11.1□□□□□ -0.63
TRAPPC4-203ENST00000447216 HERC2O95714 4834 aa11.1□□□□□ -0.63
TRAPPC4-203ENST00000447216 CFC1BP0CG36 223 aa11.09□□□□□ -0.63
TRAPPC4-203ENST00000447216 CFC1P0CG37 223 aa11.09□□□□□ -0.63
TRAPPC4-203ENST00000447216 Q8N1X5 172 aa11.09□□□□□ -0.63
TRAPPC4-203ENST00000447216 TRAV13-2A0A0B4J235 113 aa11.08□□□□□ -0.64
TRAPPC4-203ENST00000447216 PRYO14603 147 aa11.08□□□□□ -0.64
TRAPPC4-203ENST00000447216 HINT1P49773 126 aaPredicted RBP11.08□□□□□ -0.64
TRAPPC4-203ENST00000447216 REG3GQ6UW15 175 aa11.08□□□□□ -0.64
TRAPPC4-203ENST00000447216 TMEM126AQ9H061 195 aa11.08□□□□□ -0.64
TRAPPC4-203ENST00000447216 KCNQ1DNQ9H478 68 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms