RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 DPH3Q96FX2 82 aa14.25□□□□□ -0.13
CTCF-202ENST00000401394 PRO0255Q9UI72 69 aa14.25□□□□□ -0.13
CTCF-202ENST00000401394 A0A1B0GUV1 79 aa14.24□□□□□ -0.13
CTCF-202ENST00000401394 CELA1Q9UNI1 258 aa14.24□□□□□ -0.13
CTCF-202ENST00000401394 SCXQ7RTU7 201 aa14.23□□□□□ -0.13
CTCF-202ENST00000401394 LINC00167Q96N53 147 aa14.23□□□□□ -0.13
CTCF-202ENST00000401394 LAMTOR3Q9UHA4 124 aa14.23□□□□□ -0.13
CTCF-202ENST00000401394 TMEM256-PLSCR3K7ERE1 68 aa14.23□□□□□ -0.13
CTCF-202ENST00000401394 CD164L2Q6UWJ8 174 aa14.23□□□□□ -0.13
CTCF-202ENST00000401394 C20orf197Q8N268 126 aa14.22□□□□□ -0.13
CTCF-202ENST00000401394 HAMPP81172 84 aa14.21□□□□□ -0.14
CTCF-202ENST00000401394 J3QKU1 62 aa14.2□□□□□ -0.14
CTCF-202ENST00000401394 LINC00575Q6W349 94 aa14.2□□□□□ -0.14
CTCF-202ENST00000401394 Q6ZQY7 126 aa14.2□□□□□ -0.14
CTCF-202ENST00000401394 CYSRT1A8MQ03 144 aa14.19□□□□□ -0.14
CTCF-202ENST00000401394 KLK12Q9UKR0 248 aa14.19□□□□□ -0.14
CTCF-202ENST00000401394 JMJD7-PLA2G4BH0Y9G9 81 aa14.19□□□□□ -0.14
CTCF-202ENST00000401394 C4orf26Q17RF5 130 aa14.18□□□□□ -0.14
CTCF-202ENST00000401394 LINC00612Q8N6U2 182 aa14.18□□□□□ -0.14
CTCF-202ENST00000401394 TRAV10A0A0B4J240 114 aa14.18□□□□□ -0.14
CTCF-202ENST00000401394 SPAG11BQ08648 103 aa14.17□□□□□ -0.14
CTCF-202ENST00000401394 CMC4P56277 68 aaPredicted RBP14.16□□□□□ -0.14
CTCF-202ENST00000401394 RBM3P98179 157 aaKnown RBP14.16□□□□□ -0.14
CTCF-202ENST00000401394 Q6ZQT0 140 aa14.16□□□□□ -0.14
CTCF-202ENST00000401394 SMIM9A6NGZ8 99 aa14.16□□□□□ -0.14
CTCF-202ENST00000401394 UBL5Q9BZL1 73 aa14.15□□□□□ -0.14
CTCF-202ENST00000401394 TRBV10-3A0A0K0K1G6 114 aa14.14□□□□□ -0.15
CTCF-202ENST00000401394 IGHV4-28A0A0C4DH34 117 aa14.14□□□□□ -0.15
CTCF-202ENST00000401394 SNURFQ9Y675 71 aa14.14□□□□□ -0.15
CTCF-202ENST00000401394 NDUFC2O95298 119 aa14.13□□□□□ -0.15
CTCF-202ENST00000401394 HIGD2BQ4VC39 106 aa14.12□□□□□ -0.15
CTCF-202ENST00000401394 LINC01547P58512 204 aaPredicted RBP14.11□□□□□ -0.15
CTCF-202ENST00000401394 TMEM258P61165 79 aa14.11□□□□□ -0.15
CTCF-202ENST00000401394 F8P00451 2351 aa14.11□□□□□ -0.15
CTCF-202ENST00000401394 DAD1P61803 113 aa14.1□□□□□ -0.15
CTCF-202ENST00000401394 Q6ZVQ6 151 aa14.1□□□□□ -0.15
CTCF-202ENST00000401394 C16orf95Q9H693 158 aa14.1□□□□□ -0.15
CTCF-202ENST00000401394 COX17Q14061 63 aa14.09□□□□□ -0.15
CTCF-202ENST00000401394 HRCT1Q6UXD1 115 aa14.09□□□□□ -0.15
CTCF-202ENST00000401394 LYPD5Q6UWN5 251 aa14.08□□□□□ -0.16
CTCF-202ENST00000401394 TENM3Q9P273 2699 aa14.08□□□□□ -0.16
CTCF-202ENST00000401394 Q8N9L7 120 aa14.08□□□□□ -0.16
CTCF-202ENST00000401394 C6orf48Q9UBA6 75 aa14.07□□□□□ -0.16
CTCF-202ENST00000401394 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP14.07□□□□□ -0.16
CTCF-202ENST00000401394 RMI2Q96E14 147 aa14.06□□□□□ -0.16
CTCF-202ENST00000401394 KMT2BQ9UMN6 2715 aaPredicted RBP14.05□□□□□ -0.16
CTCF-202ENST00000401394 IGLV6-57P01721 117 aa14.05□□□□□ -0.16
CTCF-202ENST00000401394 ZNF561-AS1K7EIQ3 104 aa14.04□□□□□ -0.16
CTCF-202ENST00000401394 RPS28P62857 69 aaKnown RBP14.03□□□□□ -0.16
CTCF-202ENST00000401394 Q5XG85 94 aa14.03□□□□□ -0.16
CTCF-202ENST00000401394 ANK2Q01484 3957 aa14.01□□□□□ -0.17
CTCF-202ENST00000401394 BAHCC1Q9P281 2608 aa14.01□□□□□ -0.17
CTCF-202ENST00000401394 NSD1Q96L73 2696 aaPredicted RBP14□□□□□ -0.17
CTCF-202ENST00000401394 MUC7Q8TAX7 377 aa14□□□□□ -0.17
CTCF-202ENST00000401394 TM2D3Q9BRN9 247 aa14□□□□□ -0.17
CTCF-202ENST00000401394 LYRM9A8MSI8 78 aa13.98□□□□□ -0.17
CTCF-202ENST00000401394 ATP5EP2Q5VTU8 51 aa13.98□□□□□ -0.17
CTCF-202ENST00000401394 H7BZZ5 65 aa13.98□□□□□ -0.17
CTCF-202ENST00000401394 WFDC10BQ8IUB3 73 aa13.98□□□□□ -0.17
CTCF-202ENST00000401394 Q8NAQ8 132 aa13.98□□□□□ -0.17
CTCF-202ENST00000401394 ZNF73O43830 326 aaPredicted RBP13.97□□□□□ -0.17
CTCF-202ENST00000401394 C5orf47Q569G3 176 aa13.97□□□□□ -0.17
CTCF-202ENST00000401394 A0A0J9YWU9 116 aa13.96□□□□□ -0.17
CTCF-202ENST00000401394 IGHV4-30-4P0DP06 118 aa13.96□□□□□ -0.17
CTCF-202ENST00000401394 LOC110117498A0A087WWA1 95 aa13.96□□□□□ -0.17
CTCF-202ENST00000401394 DIRC1Q969H9 104 aa13.95□□□□□ -0.18
CTCF-202ENST00000401394 RETNQ9HD89 108 aa13.95□□□□□ -0.18
CTCF-202ENST00000401394 MAST4O15021 2626 aa13.94□□□□□ -0.18
CTCF-202ENST00000401394 FLNBO75369 2602 aaKnown RBP13.92□□□□□ -0.18
CTCF-202ENST00000401394 FAM236DA0A1B0GTK5 79 aa13.92□□□□□ -0.18
CTCF-202ENST00000401394 FAM236CP0DP71 79 aa13.92□□□□□ -0.18
CTCF-202ENST00000401394 LELP1Q5T871 98 aa13.92□□□□□ -0.18
CTCF-202ENST00000401394 Q6ZRU5 148 aa13.92□□□□□ -0.18
CTCF-202ENST00000401394 DEFB105AQ8NG35 78 aa13.92□□□□□ -0.18
CTCF-202ENST00000401394 PRR34Q9NV39 138 aa13.92□□□□□ -0.18
CTCF-202ENST00000401394 F8WEM9 126 aa13.91□□□□□ -0.18
CTCF-202ENST00000401394 COX7BP24311 80 aa13.91□□□□□ -0.18
CTCF-202ENST00000401394 CAMK2N2Q96S95 79 aa13.91□□□□□ -0.18
CTCF-202ENST00000401394 FBN1P35555 2871 aaKnown RBP13.9□□□□□ -0.18
CTCF-202ENST00000401394 NOTCH1P46531 2555 aa13.9□□□□□ -0.18
CTCF-202ENST00000401394 C3orf84H3BNL1 204 aa13.9□□□□□ -0.18
CTCF-202ENST00000401394 BPY2O14599 106 aa13.89□□□□□ -0.19
CTCF-202ENST00000401394 CSMD3Q7Z407 3707 aa13.89□□□□□ -0.19
CTCF-202ENST00000401394 TRAV7A0A075B6U4 112 aa13.89□□□□□ -0.19
CTCF-202ENST00000401394 VPREB1P12018 145 aa13.88□□□□□ -0.19
CTCF-202ENST00000401394 TRBV7-4A0A0J9YYF1 115 aa13.87□□□□□ -0.19
CTCF-202ENST00000401394 SPART-AS1P0CW21 52 aa13.86□□□□□ -0.19
CTCF-202ENST00000401394 ELOF1P60002 83 aaKnown RBP13.85□□□□□ -0.19
CTCF-202ENST00000401394 LINC00474Q9P2X8 69 aa13.84□□□□□ -0.19
CTCF-202ENST00000401394 C9orf66Q5T8R8 295 aa13.83□□□□□ -0.19
CTCF-202ENST00000401394 Q6ZRP5 223 aa13.83□□□□□ -0.19
CTCF-202ENST00000401394 STAB1Q9NY15 2570 aa13.83□□□□□ -0.19
CTCF-202ENST00000401394 INAFM1C9JVW0 142 aa13.83□□□□□ -0.2
CTCF-202ENST00000401394 APOC4P55056 127 aa13.82□□□□□ -0.2
CTCF-202ENST00000401394 C15orf56Q8N910 161 aa13.81□□□□□ -0.2
CTCF-202ENST00000401394 CXCL6P80162 114 aa13.78□□□□□ -0.2
CTCF-202ENST00000401394 KRTAP26-1Q6PEX3 210 aa13.78□□□□□ -0.2
CTCF-202ENST00000401394 KLKP1Q107X0 134 aa13.78□□□□□ -0.2
CTCF-202ENST00000401394 KPRPQ5T749 579 aaPredicted RBP13.78□□□□□ -0.2
CTCF-202ENST00000401394 Q6ZTC4 211 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 92 ms